Array 1 3588059-3588818 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066187.1 Bacillus cytotoxicus strain E28.3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3588059 36 100.0 30 .................................... TTCGATGTTTATCCATCCACTCTTCGACAA 3588125 36 100.0 30 .................................... TGTTTTGGGTTGCCGATGTAGAAGTAAAAA 3588191 36 100.0 28 .................................... TACAAAAAGTGACTGAGGGGGCTTATAA 3588256 36 100.0 30 .................................... ATTCCAATCGATGTATGGTGTGAGGAAGCT 3588322 36 100.0 30 .................................... GGTAGCAATCTAAAGCTATCATGTAGTATA 3588388 36 100.0 30 .................................... CTACTAAAGTGAGTAGTGCGGTTGCTAGTG 3588454 36 100.0 30 .................................... ACTAAAGTGAGTAGTGCGGTTGCTAGTGCT 3588520 36 100.0 30 .................................... TTTGATAATACCGATAAGCTGATTGGCGTA 3588586 36 100.0 30 .................................... TGATTCGTTCATAGTTAATCCAACAGACCT 3588652 36 100.0 30 .................................... ATCAGCACGTCTTTATTACAGGACAAACGG 3588718 36 100.0 29 .................................... TCAAATGACCAAACACCCCATAAATAACC 3588783 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GCCATAATTCCTCTTTAAATCTTGGTATGATATGAT # Left flank : AGTCCGGTAATCGTGGAGGAGAGAGGAGATTCCCCCTCGACCTCTCACACCACCGTACGTACGGTTCCGTATACGGCGGTTCAATTAAGTCTGACGAATCATTGAATATCTATTACTCAAACTTTTAAGACCTAGATATCCCCAGTAGGAATTGTCTAGGCTTCTTTTCGTATGCTGTCTGTTTGGCGATACTCAAAAATTGGAGTTTCTTTCTCCTTACCCTTGATAATTTTTATTGTTTCCATATAACCATTCGGAGCCTTCTTCGAATCCACTTGTCTCGTTCTTTACATATAGACGGCGTGTCGCTTAATGCATTATATCCACACCATCCAATTAGATATTTGTAGATGGTCAACCAAATTTGCCCCACCTTTGTCACTGAAAACTGACCCACCTACTCTTCCTTCGTGACTAATCGTACTTTCATTCTGTAGCTATTTCCGTTAATATTAAAAATATGACAGTACTGAACAAATATTTATTATATGCATTTTTAA # Right flank : TACATGCACCGAAACCTCTTGATATTCCTCAGTTTCAAGGGGTTTCTTTTTTAAAAAAACGAGTTTAAAAATGCTCTTTTGGTTATTTTCGTGCTAAATTTTTTTCATATTACGTCAAAACAAAAAACACTTGCTAAAATTGCAAGTGTTTTTTGTTAGAAAAAGTCCGTTTTATTTGTTCCTAATTTTTCATCAATGGTTTGAACACCAAGTAAAATATCCATACTTTCAAATTGCTTTTCTGTTACTTTTAATGAACGGATTGCTCCATTTACATTTGGAATGTTTTGCCTAAGTCTTCTCAAATGTTTTTGAGCACCTTCTTCTCCATTACAAACTCTTGTGTACACAGAAAATTGCAGCATTGTGTAACCATCTTTTAATAAAAATTTTCGGAAACGGGTGTAGGCTTTTCTTTCAGCTTTTGTCATCACCGGCAAATCAAAGAAAACAAGTATTCTCATAAATTTACTCATACGTATGTTGCCGTAATGCAATCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCTCTTTAAATCTTGGTATGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 3716995-3716507 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066187.1 Bacillus cytotoxicus strain E28.3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 3716994 29 100.0 36 ............................. TTGTGAGCCGTGAATTAAGACATATCGTCCATCACG 3716929 29 100.0 37 ............................. TCGAATACGAAAAACAAATACTACAGCTTTTAAAAGA 3716863 29 100.0 36 ............................. GTTTCTTTCGAAGGTATGTGTACGAGAGGGTCCTAA 3716798 29 100.0 37 ............................. TTCTATGAATATGAGGATATTGTAAACGATAATTCAA 3716732 29 100.0 36 ............................. AACGATTCGTCACTCATATCTGGTACGAATGAGAAC 3716667 29 100.0 37 ............................. GTAATATTAATTGGTATCAGTCTAGGCGGCTTTATTA 3716601 29 100.0 37 ............................. TCATCTGCATCTAATTTAACTGTTTTTGATTTTGATG 3716535 29 93.1 0 ....................A...G.... | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 99.1 37 GTTTTATCTGAACGTAGTGGGATATAAAG # Left flank : TGGTGGTAAAAAAATGTTTGTTATAATTACTTATGATATTGGAGAAAAAAGAGTAGGAAAAGCGTGCAAGAAATTAAAACAGTATTTAACTTGGACGCAAAACTCTGTTTTTGAAGGAGAATTATCTAGGACACAACTCTTAAAATGCTTAGCTGAATTAGATCAGATTATAATATCGAGTGAGGATTCTATTTACTTATATGAAGTAAATAATCCACGTAATATAAAGAAAAAGGTATTTGGTATTGAGAAAAGTTACGAAGAGCTATTTCTCTAAACACGATTTTATAATATATTAGGAGTAGTTTTTTTCTTATTAGTGAGAAGTTTGCAGTGCATCGTTTTTTAGCGAGTAAACTGCCAACCTCTTGTCTGTTAAAGGATGGAGCGTATTTTTGAAAATACTTTTGAAACACGACTCAACATCCGCTGCAAGATTTGGAAGTCTTAATGTAATGTGTTCCTTGATTTAAAAGGGATTATAGTGTTTTTTTATAGGG # Right flank : GCAGTTTTCTTATGGTTAAATAACCCATGGAAACAAAATTAGTCGCCATTTATGCTTATCTGAGCGGTATAGAACCTTTTAAAATAGTGGCTAGTTTTTTAGAAAAGAAAGAAGTTATCGTGAACGAAACTAGCTCCTTACCCGTAATTTCGTAGGTTAATTTGGTTACACTGAATAACTATAAAAAGCAAACCAAATCAGAGCTACATTACGAAAGGAGCTAGTTTATTATGAAGGATACCACAAAATACGTAGGTTTAGACGTTTCAAAGGAAAAAATTGCTGTTGCTATCGCGGATGAAGGAAGAGAAGAACCTAGATATTTAGGAATGATCCCTCATACACCTGAATCTCTAAGAAAGCTGATAAAAAAATTAGGTGCCGTTGAACACCTAAAAGCATGCTATAAGGCTGGTTCAACTGGCTATGGGATTTACCGCTTACTTTTCAGCTTAGGAGTAGATTGCGCAGTGATAGCTCCCTAAAAACCTGGAAATCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 3727282-3726664 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066187.1 Bacillus cytotoxicus strain E28.3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 3727281 29 100.0 36 ............................. TATGCCGTTGGTTCCAGGAGAGCGCGAGGACTTTGA 3727216 29 100.0 37 ............................. CTTAAGAAAGGAATATTGATTATTGAAAAATGGTTCA 3727150 29 100.0 36 ............................. ATGAGTTAATTCTTCTAAATAAAACGGTTCGCTACA 3727085 29 100.0 35 ............................. TGCGTCGAGTCCTTCTAGTACAAAGCCACCTTCAA 3727021 29 100.0 36 ............................. ATGTTTTCACCTCGATTTTATGATTTGTTTCATTTG 3726956 29 100.0 37 ............................. GGAAACGTCTCTGTTTTAGACGACACTAATTTCAGTG 3726890 29 100.0 36 ............................. GGGATGTTTTTCTTTGCAATCGCTCCGTGAAATCCT 3726825 29 100.0 37 ............................. TTGACTGAGCGTTCAAGAAAGTAGCATGTTTGTCCCA 3726759 29 96.6 36 ............................T CCAATGTATTCAATGGTTTTTGGACATTGTTAGAAA 3726694 28 93.1 0 ....................-.......A | AGA [3726668] ========== ====== ====== ====== ============================= ===================================== ================== 10 29 99.0 36 GTTTTATCTGAACGTAGTGGGATATAAAG # Left flank : CGTTCTTGTGAAAAAGGTAAGAAGAGGAGACGAAGAAGTCGTTATTATGATTCGCTGGGAATCTGAAGAAGCATGGAAAAATTGGGAGACAAGCGAAGAACATTTGGCTGGTCATCGTGCAAATCGCGGAAAACCAAAGCCAGAACATATTTTAAATGCTGAACATGCTGTTTATTATGTGAAAGCAACGAAATCGGCTTATCAGCAATCATAATGTGGATGAAAAGGGGGCGATTTAGCCCTTTTTTTAATGATTAAAGAATTCTTTTCTTAAATGTAGTTTTGTATTATATTAGAAAATAAGAGTGTACCTATACCAATACTCATTTTGCAGCATATCAATTTTTGAAAGAAAGGAGTCAAAACCCTTATGTTTCAAGGGATAGACTTTATTTTTGAAAATGCATATGAAACAAAACTAACAGTGTGCTGCAAAACTTTCAGTGTATTATATAATAAATGTATTGATTTTAAAGAGAATTATGGTGATTTTTTATAGG # Right flank : AGCTTCAGATGATAATAGTCCTTCTAGGGCATAGCTATCAACTTTAGAGAAGTGCTTCCCCTAAAAAAGTATCGGGACACTTTTTTGTAATCTTTGAATGCAATCCTGGATTTTGGGTATATTCAAATAGAACTTCCTATGATATATATTTTATGGCGCTATTTGAAGCCGATTCGCTGATTTTTCTATGTTTTGTTTACTGATAGCTTGAAAGAGGTTGCTAAGCACTAAAACAGGGGGGGAAGTACAAAAAAGTTGCGGTGTATATTTTTTTGATAGATTTGCACCATATAAGCATATTTCAACTTACTCATTTTTTCCTTGTGTCTCTCATAAAGGTCTTTGTAGTTGATAGGTGTAACGCTTGCAAATAAACATAAACGCAAGGAGTATAAATTTATTTTAAATAGAAGTTCTATTTGCTGTCGTAATGAATAAAAAGCATACACTTCTGTGAGAGGATACTGAAAAATGGTGGTTTTGAAAAATAACACGCATTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //