Array 1 17512-19879 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH942402.1 Vibrio cholerae HC-56A1 vcoHC56A1.contig.102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17512 28 100.0 32 ............................ ATCGTCGTTTATTACGTAGGTCGTTGGCAAGA 17572 28 100.0 32 ............................ AACAAATACAGTCTCAATCTAACATTCTTCGG 17632 28 100.0 33 ............................ ACGAAAAGGTAAAGTTGCTAGCGGACAATGTTC 17693 28 100.0 32 ............................ TGTAAGCCCCATCGATAACATCGATGTGTTCC 17753 28 100.0 32 ............................ ATTACGACCGTTGGCCAGATGACATTGATGGT 17813 28 100.0 32 ............................ ACAGCAAGCCACGCTAGCCGGGGTGAGTGAAG 17873 28 100.0 32 ............................ ACCATGATTATGGCAAGGACAGCTACTATTCC 17933 28 100.0 32 ............................ AAGCAGCTTTAGCACTCGCAGAAGTTCGCTTG 17993 28 100.0 32 ............................ TTAAGCAACACACCTATAATTAAAAAATAGTT 18053 28 100.0 32 ............................ GGCAGATTCGAGCGCACCCCAGAAAAACTTAT 18113 28 100.0 32 ............................ CTTACGAGCACCACCATGAGAATGATTAGTGT 18173 28 100.0 31 ............................ TTAAATGCAAATGCCCGTTACTTACTGCGGT 18232 28 100.0 32 ............................ GCTTTGATAGCAACCGTTATGTCCATGCCCTT 18292 28 100.0 32 ............................ CTATAGATAACGGGTAAAACGCTTGGAAAAAC 18352 28 100.0 32 ............................ GCTTTCAGTCTCGCCACTCTCTCAGCTACCCA 18412 28 100.0 32 ............................ CATAAGCTTCAAAGCTTCGGTTTGATTCTTAC 18472 28 100.0 32 ............................ AGAGGAGGCGTTTGCCGAGCTGGGCGTAAATG 18532 28 100.0 32 ............................ ATATAGATCCGGTTGTGTTTGTTGCCTAGTGA 18592 28 100.0 32 ............................ AACAACGCAAACCATCACAACAGAGCAGGTAT 18652 28 100.0 32 ............................ CCTACCTTCTTGTATTCTGGAATTAAGTCATG 18712 28 100.0 32 ............................ ACTTGAAGAGGAGCTTATTGAGAAGCGCCATT 18772 28 100.0 32 ............................ AAATATACAAAGTCGTTCCTGTTTTGTTCTGT 18832 28 100.0 32 ............................ ATCCTCTAAATTTTCAACCGTTCCGTTATTAG 18892 28 100.0 32 ............................ GTTATATCGTTTGATGTTTGTCTCGACAGCTT 18952 28 100.0 32 ............................ AAAGCGATCAGAGTTTATGATGTGAACTTTTT 19012 28 100.0 32 ............................ TCGCTGAGCGATCACAAGAAACCAAAAACGAA 19072 28 96.4 32 ...........T................ TTAAGCGGATCCGTGGTAGTGGACTACCAAGC 19132 28 96.4 32 ...........T................ CAGAATCTTGCGGCTGTAAACATCAGCCCAGA 19192 28 96.4 32 ...........T................ CGCATCACCACAAGCTCTCTCTGTCTCTATAC 19252 28 96.4 32 ...........T................ TACCGCGTGACGCGTCACGCTAATTTTTGCGT 19312 28 96.4 32 ...........T................ ATCAGCAACAGCGCCGGGTATTCGCACTGCAC 19372 28 100.0 32 ............................ TGAGAGGGAATCAAGTTGTCTAGAGAATTAGA 19432 28 100.0 32 ............................ AAGAAGCGCGGTAGCCTGTAGCATTCATCATT 19492 28 96.4 32 ...........T................ TGAATCAATCACCGCAGCAAGGGCGGCTTTAG 19552 28 96.4 32 ...........T................ GTTTCTAAGGCTTGTCCTGCGCCCGACGTTGT 19612 28 96.4 32 ...........T................ ATTACTACTTTCTCGATGGTTCGTTGCTCAGC 19672 28 96.4 32 ........T................... AATACATGTTTGGCATCGCTAACCAGCTTTAT 19732 28 100.0 32 ............................ TTCTATGACATTCCCGCCATGAAGTAATTGAA 19792 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 19852 28 85.7 0 ..........AT.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 40 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCTGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //