Array 1 2766178-2765848 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076406.1 Providencia rettgeri strain PreM15973 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2766177 28 100.0 32 ............................ AATTTTTATTGATAAATTGAAATCGGTATCAA 2766117 28 100.0 32 ............................ TTCCGGTACTCAATCCAATTTCTCCAAGTCGT 2766057 28 100.0 32 ............................ GATAATTGTATTGACCTAATTGCAACTGACCC 2765997 28 100.0 32 ............................ TTCCGGTACTCAATCCAATTTCTCCAAGTCGT 2765937 28 100.0 32 ............................ TGTTAAACTGTTAGCCCCTAGCGCATCTGTTG 2765877 28 78.6 0 ......T...GT......A..AG..... | AT [2765856] ========== ====== ====== ====== ============================ ================================ ================== 6 28 96.4 32 GTTCACCGCCACACAGGCGGCTTAGAAA # Left flank : ATATTAAATCGATTCAGGCAATACCAGAGCAGCATGTTCAAGTCAGTTATATTCGAAAGCATGTAAAAGGGCTGAGCCGAATTGAAGCCGATATGCAGCAAAAAGCACGGTTATGGTCTGAAAAATCAGGGCAACCATTGGAACAGTGTTTGAAAACATTGTCTGAGAGTAAGCCAAAAGCGAACAATCGTTTGCCATTTATTTGGGTTGAAAGTTTACATGCCAGAGATAAGCAAGTCGAAAGCCGGCCTTTTCCTTTGTTTATAGAAAGGATAGAAGCTACACAAAAGCAAATTGGGGTGTTTAGTTGTTATGGTCTTAGTCAAGCAACTAGTGGCTCAGTTTGTTTAGCAACGGTTCCCCATTTTTGACCTTTGCTTTTTGCTCTTTTAAAATTAGTCAGTAAATCAGTAGGTTATAACTACCAGTAAATAAAAGGGTATTTTCCAATAAATACCCTTAATTGATTGTTATCACTTATTTTTATTTTAAAGTGCATC # Right flank : CTGATCTATTTACTGCAGTCGGTATGTAGTACAGACGATACAATGGAATGTGATTTGCACTAAAAAGCAATTTGCATTACAGTGCAAATTATGATGAGGGTATATGTATACTGTAAAATATCATTCTGAGGCTGAAAAAGAAGCAAATGCACTGCCTTTAAAAATCAAGGTGAAATATGACCGCCTCATTAAAAAATTAGATTTATCAGCTAATTATTTAAGAGAACCAGATACTAAATCATTGGGCGATGGATTGTTTGAGATAAGAACTATGGGAAGTGAAATAGCTAGGGGGTTATGGGTTTACCACAAAGATAAAACAATTTTTATGCTCAGGATCTTTATCAAAAAGTCACAAAGAACCCCAAAGTCTGAGTTTTATTTAGCGAGAAAACGTTTATTGGAGCTATTAAACGATGAAAACACATAAAGAGCTACATGATGAATGGATGAAAGATCCAGAATACCAAGCTGCTTATGAAGAAGAAATAAGAACTGAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2775249-2774861 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076406.1 Providencia rettgeri strain PreM15973 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2775248 28 100.0 32 ............................ TAAACCAGAAAGAACTAAAGGCGGTACGTTTT 2775188 28 100.0 32 ............................ GTGGGTGTGGGTTATTGAGTTTAAGCGAGTGT 2775128 28 100.0 32 ............................ AACTTCAAATCATGCCAGCCGTTTGTATTCCA 2775068 28 100.0 32 ............................ TCGAAAGGGTTTAGTATCACACTGGGCAAGCC 2775008 28 100.0 32 ............................ TAGTTCTGCACGAAGTTGTTCAGTACGTTCGG 2774948 28 100.0 32 ............................ AACCTGAACTCTAATATATGCAGAATATTGCC 2774888 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCAATTTTGAGTCTTTCGATAAAACGAAGCGCGAGGTAGCGATGTTAGTTTACACGCTCTAATGACTGATAAACCCGCGGCCTTTAATGACTGAGCACAGGATTTCTTTTCAGCCACTACCAACCCTTTTTTGCGAAAAGCTCCTTCATCGCGTGGTTTTCAAGGCTAACTTCCGCAAAGAGCTTTTTTAGTTTCGCGTTTTCATCTTCAAGCTCTTTTAATCGTTTAACATCATTAGCTTCCATGCCACCATACTTTGATTTCCAGTTATAGTAAGTCGCGTTGCTGATCCCATTTTGGCGGCAAATATCTTCCACTTTCATGCCAGAATCAGCGAGTTTTAAAATATTAACGATTTGAGTTTCAGTAAAACGGGCTTTTTTCATTATGACCTCTGCAAATTTTAGGGCAGAAAATCTAATTATAGCTGTCTTATTTTAGGGGAAGTGGACATAGGCAGCTTAGAAAATATAGACATTACAGATTTCAAGACAGTTGTT # Right flank : GCGCTATCGATTTTATGTATAAAGATAATCAGGTTTATGGTCACAAGGATGGTATAAAAAGAGCATCAGTGAGTATTTTTTTACTGGTCATTCTGTGAAACCCTTCGCAAATTTGGCTTTGGTTGAAAACAAGGACTTGTTTCGTGGGATAAAGCTTATTCTAATAGATTGATTCAAAAATCTTATTATTTAAGGACAGAATCCAACTATTATGGACGATTTTTCACCAAGTGAATTAAAAACTATTTTACATTCGAAACGCGCCAATATGTATTACTTGGAACATTGCCGAGTTATGCAAAAAGACGGCCGTGTTCTTTATTTCACTGAAGCTAAAAACGAAAACCTCTATTTTAATATTCCAATCGCAAATACCACGGTCTTACTTCTGGGCACTGGAACCTCTATTACTCAAGCAGCAATGAGAATGTTATCTCAAGCAGGGGTATTAGTTGGCTTTTGTGGCGGCGGCGGTACACCGCTGTATATGTCTACCGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2777583-2776534 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076406.1 Providencia rettgeri strain PreM15973 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2777582 28 100.0 32 ............................ TGAAACAGATTCGGTAAGAATTTATTTACAAG 2777522 28 100.0 32 ............................ GTATTTTCCCACGTTACATTGTACTCCCCCGC 2777462 28 100.0 32 ............................ GTCCTTGGGAGGGCGTCACGTTCCATGCCCAG 2777402 28 100.0 32 ............................ GCATGGAAAGACCAGGAGGTTGAGGTGATAAT 2777342 28 100.0 32 ............................ GTTAAACCTAAACTCGCCAGTCCCCGTATTTT 2777282 28 100.0 32 ............................ ACCACCGTATTGGCTTGGGGCTCCTATTGAGC 2777222 28 100.0 32 ............................ GTAAGGACAGGTAAGAGGGTACGTTCTGTCAT 2777162 28 100.0 33 ............................ AATCACAAAGCTCATCATGGTGGGCTTTTTAAT 2777101 28 100.0 32 ............................ AACAAAAATAGTTCTGGTTGCCGGAGGTAACA 2777041 28 100.0 32 ............................ GTATCTCTGGAGCAGCCATTGATGCTAAACAA 2776981 28 100.0 32 ............................ TACACCTCAATATCTATCTTTGACCGTATCTC 2776921 28 100.0 32 ............................ ATATGGGGAAGAAACTACCAAGGAGACGATTC 2776861 28 100.0 32 ............................ TTGTAGATATTCGGCATATATTCATTACTTAG 2776801 28 100.0 32 ............................ ACTGAAATTATCAACTGTAATGTTATATGGAT 2776741 28 100.0 32 ............................ TGTAATTTTCGTTGCTGTTGAATAATACACGT 2776681 28 100.0 32 ............................ GTTCCAATTATCAACAAAACCACCTGCTTGAT 2776621 28 100.0 32 ............................ TAAACCAGAAAGAACTAAAGGCGGTACGTTTT 2776561 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATTGAAGCTAAGCAAGGTTTACAATTACAAGAAATTGATAAATTGAATTTTTTAGCTGACACGCGCTCGATTCAAAACGCAGCCCGTAAAAGTGAGTTGTTAGAAACAAATTGGACTGGCACCACCACAGATTATTATAAAGAAAAAGCGATGTTTGAAGCTTCACAAAGTATTTTCAAAGACTTAAATAGCATGTCACTTTTCGGCAGCCGTTAATTATTTAATATTCTTTTTACTCACCGCGCTTTGGAGCCATTCAAGCGCGGTTTTTTGTTTGGGGGGTTTTTAGTCACCACAAAAAGGGGATTTGAGTTTATTATTGTGTCTTTTTTATATTGCATAAATTTGCTTTTGTTTTACCCTTATTTGACCTTTCATTTTTGCTCTTTAAAAATCCGCTGATTTAACAATTAGTTATAGGATTCACTAAAAACAAAGGTATTTTTTGTATTTTAAAGCTAGTCAGTTGTTTTTATTTGTTTTAATCTATTTTTGTTATA # Right flank : GTGGGTGTGGGTTATTGAGTTTAAGCGAGTGTGTTCACTGCCGTATAGGTGTCCACTCCCCATTAATTGAGACACATTAAATTAGAGTTTTCTAACTGTTTACGATAGGCCTCCGGTGGGAGGTGATTTAAACTTTCGTGAGTTCGATTTTGGTTATAATCTTGTAGCCAAAACCATGCTAATTCTCGAACTTGGCTTAACGATTCAAATAAATACGCATTTAAAAATTCACGACGGAACGAACCATTAAAACGTTCGATAAATCCGTTTTGTTGTGGTTTTCCTGGTTGAATATGGCACAGCAAAATTTGGTTATCTTCACAATAATTCAATAAGTTAACTGAAATGAGTTCAGGTCCATTATCGACTCGGATCTGTTTTGGCAATCCTCTTTCGGCTTTTAAACGTTCAAGCACCCTGATAACACGTTCAGCCGGTAATGACGTATCAACCTCAATCGCCAAGCATTCTCGCGTTCCTTCATCAATAATATTGAGAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //