Array 1 1884-56 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALIV01000033.1 Pectobacterium atrosepticum ICMP 1526 C14_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1883 28 100.0 32 ............................ AGTCCGTCACGAACTTCAAAACGTTTAGCCCA 1823 28 100.0 32 ............................ AGCCTGGAAGACATCGCCGGTCAATCGGGGCG 1763 28 100.0 32 ............................ ATTTCCTTTTTCAGTGCATCCGTGCGGATTTT 1703 28 100.0 32 ............................ CCGATTAGTGAATATCGGTGTCGGCACACCTC 1643 28 100.0 32 ............................ AGATTAATAACGTCACGTTCCCAGGCGAGGTG 1583 28 100.0 32 ............................ GCACATATCATCGCACGCATCCAAATGCGATG 1523 28 100.0 32 ............................ AGAATTTGAGCCTGATAACTGATTAATGGCGT 1463 28 100.0 32 ............................ TGCCAATTTTTCGCCCCGCCGGGCAGCAAGCC 1403 28 100.0 32 ............................ TACTGTGCCGGAGTGTTGTCCCTCCGTGAAAT 1343 28 100.0 32 ............................ TGGCGACACAGGAGATTGCCAGCCAGTCAGGG 1283 28 100.0 32 ............................ GCAGAGACTATCGATACGGTCTGGACGGATGC 1223 28 100.0 32 ............................ TGTGTCGGATCGGCGTCGGCGTTGCCGTCAGG 1163 28 100.0 32 ............................ CTCGGCATACGCCAGTTGGGGAATAACAGAGT 1103 28 100.0 32 ............................ GCGAATCGTACAGTGGCCAGCGAGCGACGGTT 1043 28 100.0 32 ............................ CTCGGCATACGCCAGTTGGGGAATAACAGAGT 983 28 100.0 32 ............................ GCGAATCGTACAGTGGCCAGCGAGCGACGGTT 923 28 100.0 32 ............................ GTTTGCAGGGTCAGACCACGACACCATCGCCT 863 28 100.0 32 ............................ ACCCGCAATTTGACAGACGAGCAACGCAAGCT 803 28 100.0 32 ............................ AGCATCACGTCGTGGGTCAAATACTGCGACAG 743 28 100.0 32 ............................ ATCGTTACACGGCACATAGATTGCGTCCGTAA 683 28 100.0 32 ............................ GTGTGGGCCAGCCGTACAGGTGATTACAAAGA 623 28 100.0 32 ............................ GGAAAGTTGATCTACACCGACGAGCCTAACGC 563 28 100.0 32 ............................ AGCGTAGACGCGAACTCATGCGCGAATTGCTC 503 28 100.0 32 ............................ TGTTGAGCTAACTGGTAGTTGCTGCGGTCTGG 443 28 96.4 32 ...........C................ GATCTACCAGCCTCAGACACATTAGCCCCCGC 383 28 92.9 32 ..........AC................ TGGCACGGATACATCCACTTCACTGACGCGCC 323 28 96.4 32 .........A.................. AGTGTAGTGATATAGATTGGCCGGCTCATTCA 263 28 100.0 32 ............................ CGGTGATGAGTGCCTGATTATCTTTGCCGATC 203 28 100.0 32 ............................ TGAACTAACACGCCATAAGCAATATCAAGCGT 143 28 100.0 32 ............................ TGTCGCCATAACCACCTGTAATACAGGCTCGG 83 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 31 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGAGTTACGGAGGTACCCGTTCCCAACATCACAACACTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGGCAATGTTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTTCCGTAATAGATAATAGCCATGACGCCAGCTTAATAAATCGCAGGCTAACTATTTGATAAGGAAAAATATAATCTTCAGAAAACTGATGAAAATCAGACTATCACAGTTGCATGTGAAAGATGATGACCGCAAAAAATATTACCTAAACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACAGATAGGGTTAAAAAAGGGTTTTTACGAAGAAAATGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : ACAGATAATTGATAGAGAGACGTCAATTAATGGTTCACTGCCGTACAGGCAGCTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11923-12550 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALIV01000033.1 Pectobacterium atrosepticum ICMP 1526 C14_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11923 28 100.0 32 ............................ TGGCTGAATGAGGCCGTGGAGGCTGCGGCTAC 11983 28 100.0 32 ............................ CAGTCGCTACCAAGCGCATTAAGTGCAGGGAC 12043 28 100.0 32 ............................ TGGTCTTCACTCAACCCTTGCGCACTGGCCAC 12103 28 100.0 32 ............................ AATTATTAGCGCGTTCTAATACATGCCCTTTG 12163 28 100.0 32 ............................ AATCGGAGCAAGTCATGCAGAGAAATCAAAAT 12223 28 100.0 32 ............................ ACCTGGAAGACGCACTACGCCTGAATCCGCTG 12283 28 100.0 32 ............................ TTGCTTTAACAACCACCGTCTGAACTCACTGT 12343 28 100.0 32 ............................ CAGCCAGCTTATCAGGGGGCCATCAAGCCATC 12403 28 96.4 32 .............C.............. AAGCAAATAGACTCCATATTTGAGCGTAACGG 12463 28 96.4 32 .............C.............. ATCGCAGTGATGAAGATCCCCGCAGCCTCCCC 12523 28 75.0 0 ............GC......T.C..GGC | ========== ====== ====== ====== ============================ ================================ ================== 11 28 97.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCCCTCTTCGACTACATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGCTCTTCTTGCAGAAACGAATGCCAATTGGGTTTGACTGGGCGCAACATGATGGTATCCCCTTCACGCACGATCTCCAGTTCATTGACGCCTTCAAAGTCCATATCACGCGGTAAGCGAATAGCACGATTATTACCATTTTTAAATACTGAGACAATACGCATAATGCACCTCCTCTTAATACAGAATTCAGCCAGCCGCTAGCCTGACTAAAACATAGGTTAAGTATAGATTTGAATCGTTCTCTTGTATATCCGCGGCATATGTACGCACCTAACATAGGTCTACCGAGAATAGATAAAATCGTTGCCACAGGGTTGGCACCCTTTTTTCACGGACACTTGTAACTCATTGATTTTTAATATCGATTAAGCGCTATGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTTCTTTTAAAATTAGGTAACTACCGTAAAATAGGAAC # Right flank : CTTATCGGGGATACGTTGCTGGTACGACTCGCTTCAAGGGTGTTATTCCCCATTCAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAAATGCCCTGCCAAGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTCAGGCTATTTCCTAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAAGTATGGCGGTAGTACGGCTCATCCTCCGGCACTAAACGATTAAAGAAGCTCTCGAAATCCTGCCGTACCGTGGGATCGGCATTCTCATTAATCGTCAGCGCCGCCGAAGTATGTTTGATGAACACATGCATCAACCCGACCTTTATCTGGCGCAGTGCGACAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGAGCCAGAAT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //