Array 1 9585-10770 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYDM01000002.1 Salmonella enterica subsp. enterica serovar Newport str. 637564_17 SEEN6417_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9585 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 9646 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 9707 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 9768 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 9829 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 9890 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 9951 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 10012 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 10073 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 10134 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 10195 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 10256 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 10317 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 10378 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 10439 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 10500 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 10561 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 10622 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 10683 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 10743 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 27440-28323 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYDM01000002.1 Salmonella enterica subsp. enterica serovar Newport str. 637564_17 SEEN6417_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27440 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 27501 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 27562 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 27623 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 27684 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 27745 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 27806 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 27867 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 27928 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 27989 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 28050 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 28111 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 28172 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 28233 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 28294 29 100.0 0 ............................. | A [28321] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //