Array 1 12111-11106 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NULZ01000047.1 Bacillus thuringiensis strain AFS040438 AFS040438_115_E2_Contig47_140618, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                        	Insertion/Deletion
==========	======	======	======	============================	=======================================	==================
     12110	    27	  85.7	    37	T..............-...T......G.	TGAACTTAAGTCAGAGTCAAATTAAAAATTGGGAAAC  	C [12099]
     12045	    28	  89.3	    37	............CG.G............	CTAAAGGCGTTAAGTTTGTTGTGTTCGGAATGATGGA  	
     11980	    28	  92.9	    36	............C..............T	TGTTTTAACGGCACGCTCTCCTAACCCTCGATCGTT   	
     11916	    28	  92.9	    37	...........G..T.............	CAATCTATCAATTTGCCAATATAGCATACGAACGCTA  	
     11851	    28	  82.1	    39	............CTAC...T........	CTTTGTAATTGCTAAATCTATTGAATGGGCAATTTTCTA	
     11784	    28	 100.0	    33	............................	ACACAAGGGAAAAGATATTATGATCAATGATAT      	
     11723	    28	  85.7	    38	T..........G..T...C.........	AGCTACCTTGCTTACAAAGGTGGGTTAGCGCGTGGAGT 	
     11657	    28	  89.3	    37	.........T..C.T.............	CCTCGAAATCTGTTGATGTGAATGATGAAGGCTTTGT  	
     11592	    28	  82.1	    37	.....A.....GC..C.....C......	ACCACTTTATCCAGCTTGTGAGACATCAAAGAATAGA  	
     11527	    28	  82.1	    37	.....A......A.TG...T........	ATGAATCGTCTTTTTTCTTTAAAGTTCTGTTATGATG  	
     11462	    28	  96.4	    37	...............G............	CAGGACACTATGACCATGTACATGTAGGCTGGAAAGA  	
     11397	    28	  82.1	    39	G....C...A..C.T.............	CGATATGAATGGAGCGTATGCGTTTTATATTTTTCACAA	
     11330	    28	  82.1	    38	.....A......C.TG..........T.	CTTGGAATTTATATGGGTAATAACATAATGTTTAATGC 	
     11264	    28	  71.4	    37	.....A......CTAC...TTA......	CCTGTGCCGGTGCTGAAAATATACCCAAATCAGCAAA  	
     11199	    28	  82.1	    38	.....A...T.GC.T.............	CTCAACTTGAACAATGGCTTTACACCTTATATTGTATC 	
     11133	    28	  85.7	     0	............C.T...GT........	|                                      	
==========	======	======	======	============================	=======================================	==================
        16	    28	  86.4	    37	CTTTATATCCCATACAGTTCAGATAAAA	                                       	       

# Left flank :   AAAAGTTAATCATGTAACAGATATCAAATATACATAAAGCTTAAAAAATTCTGGGATGGGGGAATTATGATGAAAAGTCAAAAAGAGCTTATCTATCATTTTAGAGAGTTTTGGGATTTTGAGTATATCTGTTTGGAGAAAAAAGGCTTGGAGTTCCCAGAATTAGAAGAAGTAATGTTGAAATATCACATGTATAAGTCTGATGAGAATTTAGAATTTAAAGAGTGTTGGATACATCGTGAATTTGTGGATGGAGAGGAATTAAGAACAGTTCAAATTATATATGAAGATAGTAAAATTAATAGGGTTGTTCGTTTATGGGGATCTAAGAGAAATAAAGATGGAAAAGTTCTTGCAATGACAATGGACTTTTTAAATATAGAAACCAAAGAACTTGAATGTGAAATTGATCTAATGAAAGATAAAAAATTTGAAGGTAGAAACCATAGAAATAGAGCCCTTTTTAATTAAGACTCTATTTCTATGGTTTCATTATAAAC
# Right flank :  CCTTATCTATATACGGATGATACACATTATGTTAGCAATATTTTAACATATGTAGCAACTAACATTTTGCAGCGAATCATCGATCATGTTTTATAAAAACGAGGTTCACTGCAAAATTACGGAAGTACAATTCCTATTCCCGTTATCTTTTCTTTATCAAAGTCATACTTACAATTTAAAGTGTGTATGTATTGAAGTCCGGGAATATCAATTTCTTTTATTTCAATTCCATATCGTTGAACCTGTTTTCTAGAAATAGAGGTTGTAAGCTTTTCGATTTGCATTCGTAATACTTTTCGCTGTTTCAAATCTTTTTCCTGTTTAAATGTAGTAAATAGCTCACGATTCTCTACATATATGGACCAGGGAATAACTTGATAATTATCAATATCACGCAGCAACCTTTGCGCTTCTGTATTTCCCATATCATTTAGTGGTAGTTTATCTAATGTTTTTAAAGCTTGATAGAATTCGTCTAAGTATTTTTTACTTAGATTTTC

# Questionable array : NO	 Score: 3.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.32, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.13,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTTTATATCCCATACAGTTCAGATAAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:71.43%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [27-21] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,0.41   Confidence: MEDIUM] 

# Array family : NA
//