Array 1 52300-50208 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTRF01000020.1 Bifidobacterium longum isolate Bifido_09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 52299 36 100.0 28 .................................... ATGTTTAGTGCAGAGGAACCATCTGATA 52235 36 100.0 28 .................................... CCTTGGACATGAAGCCGGCCGACCTTCA 52171 36 100.0 28 .................................... TTCGCCCACGCCGCTATCTCGGCCGAGA 52107 36 100.0 28 .................................... TGCAGCAGCTTATCAGTGAAGGCTACGT 52043 36 100.0 28 .................................... TCCTTTCAATCGTCGTGTCTGAACAAAT 51979 36 100.0 28 .................................... ACAGCGGCGATATTGCGTTGAATCAGGT 51915 36 100.0 29 .................................... TGGCGGTTCGCGCAGGGGTGGTCACGATG 51850 36 100.0 29 .................................... GTATTTTGAAAGTACGGTGTTCCGTGCCT 51785 36 100.0 28 .................................... AGACGGAAGAGAAGGTGACGCCCGAGAT 51721 36 100.0 28 .................................... CCAGCGTGGTTGCAGTCACTGGCGATAC 51657 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 51593 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 51529 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 51465 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 51401 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 51337 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 51273 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 51208 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 51144 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 51080 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 51015 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 50951 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 50887 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 50823 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 50758 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 50693 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 50628 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 50564 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 50499 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 50435 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 50371 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 50307 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 50243 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 33 36 99.6 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGTCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 6660-7236 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTRF01000036.1 Bifidobacterium longum isolate Bifido_09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================== ================== 6660 23 91.3 40 ........T.............C CCCCCCGAAAAGGGCCGGTACTGGGCTGGCTTGATCTAAC 6723 23 100.0 39 ....................... ACCGTGCAGTCCGGTAGGCACCCGGTACAGGCGATGCAT 6785 23 100.0 38 ....................... ACCCCTCGCCAGCCGGTTCATCGAGATCACCGCCGAAT 6846 23 100.0 38 ....................... ACCGACGGCCGAAGACGCTGACAAAACGGCGCAAGCAT 6907 23 100.0 38 ....................... ACCGACGGTGAGCCACGTTTGGATAACGGACAACTAAT 6968 23 100.0 38 ....................... ACCTGAGCACAAGTTTGATGGGGACGGGGACGAGCCAT 7029 23 100.0 39 ....................... CCCCAGTCGGAGGTCATTCCGAGTGCGTTGCCTATCGAT G [7044] 7092 23 100.0 38 ....................... CCCCACGCGCGGGCGACCTGAAATGAGCCGAACTTAAC 7153 23 87.0 38 T........G..T.......... ACCGATGCCCTTTTCGAATTTCGTTGAACTATCACGAC 7214 23 73.9 0 T........G..T.T......GG | ========== ====== ====== ====== ======================= ======================================== ================== 10 23 95.2 39 CTACCCCGCACACGCGGGGATAA # Left flank : ACCCGAAGGCATCCAAATGGTCGTTGAACGGCATGGAATACCGCGGTTTCAGCAAACCAACCCTCATGGAACAGGCATCATGGTACGCATTCGGCCTATACGCCTACCATCAGCAAGGCAACCAGTGCAAACCCATGTACGTGGAGGGTGAACGCTTCAACAAGGCTTTACGAACGTTGGCTGATACCGGCGAAGACGTTGACGAGCTCTACAGGAAAATGTTGAACACGCGAAACATGCAGGAGGCCGCACCGTTCTGTCTACGGATAATCCGACTGTTGAACGAGTATGACATTCCATTGGATCACGCCCTGCTGGCATTGGATCTGGCGAGACTCAGCAAACCGGACTCGGCAAACACAGTGCGGCGCGACTGGGGCCGCTTGCTCAACTGATTGTCCGCCGATCTGCGGTCAATGGACAATCAACTCAGGAAACAGGTATGCAATTTGCATATACGGCTCACGCTTGACCTCAAAAAACGGTGAAAGCTAAACTGC # Right flank : GTTTCTTATCCGTTTTCCCATTTGCCTGTTATACTGAATACGTTCACATAGAAATGAAAGAGGAAAAACAATGAGCCCTTCGGAAGCCAGTGCCACGAAAATCCCTGCCACCTCCATAGACCGGCACTAATTGAAGTGGGGGGTAAAAATGAATCATCCAGATCAACTCAGCCGTGAATATGCGGCGATCCTTCCCGCCTTGAAAGACCACGGCTATCGAGCCGACGTGAAAGCAAGCATCGCCGACGAACGTTTCATCTTGGTCGTCAGCGGCAAACCCACCACAAGAATCTACCGGGACGGAGGATGGGTTCGCGACGATGGTGCGAGAGGATCCGCTCCAGCCGACCTACTCAGCTTCTACAAGCATGAGCATTACACGGAAGCCCTGAAACATTGGACGAACAAGGATTGGCGTGGAATCGCCCGTGACCTGCTGATCGACAACGGTGTCCGCATGGGGGCGGTCCTGTCCGCCGTTTTCGAGGGTGCTCATTTGG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACCCCGCACACGCGGGGATAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //