Array 1 765-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACDY02000010.1 Neisseria cinerea ATCC 14685 N_cinerea-1.0.2_Cont9.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 764 36 100.0 33 .................................... TTCACGCATAATAAGACTGTCACACGCATGAAT 695 36 100.0 34 .................................... GAAATTCAACCAATCTATTCATCGCCGTTTACTC 625 36 100.0 33 .................................... TAAAAATCTTTCGGTTTCAGCCCCTACCCTCAG 556 36 100.0 33 .................................... CAAATTGTACGGGCGAACTCCTTAAGCTTATTC 487 36 100.0 32 .................................... ACCACTCACGGGCGTCCACTTCCTTGAGCCGC 419 36 100.0 33 .................................... CGCGCAGGTCGTATGTACCTGCGTTCGGGTCTG 350 36 100.0 34 .................................... TCTTCAGATACGAACTCAACGGTAAATTTGTTGT 280 36 100.0 32 .................................... ATTTACCCACCTATGTATCGTCGCAGGGGATT 212 36 100.0 34 .................................... AATCGTCTCTACATTACCTTTACCACCTAATCCA 142 36 100.0 31 .................................... AAAACGTCGTCGTAAGACGTGAACAGCTTAT 75 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================== ================== 11 36 100.0 33 GTCGGAAGACTTGCCCCACAAATCGGGGATTACGAC # Left flank : TCATAAAAACCAACTGACCTTTTGCGAACTCAAATCCGATTTAGATCTTGAAAAAAACAAACTGACAGACCCGCTGAAGCAGCTCCTCGACCAAAGCCACAACCTCGGCAAAGTCCGCCGCGCCCTGATTTTATCGCCGAAAATCAAAGAAAAATGCCAAGCACAAACAAGCGGAAAAGAAAAATGGATGGCATTTGAACGCAGTTGTACCGACAAAAAAATCCAGATTATCATCGCCGAAAACAAAGAAGCCCTCAAAATACTGACCCCTTGACAAGCAAACATCAAATGCCGTCTGAACCGTAAAAACCGTTGTCGAATGCAAAACAGACGGCTATAATCCGCAACACAAGTTTTCCGGCGGACGGCTTGAAGCCCGTTTTCCGGCTGCTCTTTAAGTTAAAATTCCGTTAAACAATGTTTTTGATGGTTAAGAAAATTTTTAACTATTTTTAACACTGCAGATGTTTGAAAACATTAAGGTTTTTTGACGAGATGCA # Right flank : CTTTAGAAGTGTCTTTGGTAACGGTTCAAAGGTGGGGTCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACAAATCGGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 3737-3213 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACDY02000025.1 Neisseria cinerea ATCC 14685 N_cinerea-1.0.2_Cont24.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 3736 36 100.0 34 .................................... CTCGGGCATCCTGAGCATCTTTCATAGCCATGAA 3666 36 100.0 35 .................................... TTTAGAAGTGTCTTTGGTAACGGTTCAAAGGTGGG 3595 36 97.2 33 ..................T................. TGTTCAAAATCTACCGTCCAACGACGTTGCCAG G [3571] 3525 36 100.0 33 .................................... GGTTTGACATACCCTCGAAACGCACTTGCCGGA 3456 36 97.2 32 .......................T............ TCTGCCTGCAAGAATCCTACGTTGGACTTCAT 3388 36 100.0 33 .................................... GGGTAGCGCGTATGCACCACAAATTCGTCATTC 3319 36 97.2 34 .......................T............ TGTGGCAACCTGCCTGTCAAGGCGTTGGTAGCGA T [3312] 3248 36 91.7 0 ............................C..CA... | ========== ====== ====== ====== ==================================== =================================== ================== 8 36 97.9 34 GTCGGAAGACTTGCCCCACAAATCGGGGATTACGAC # Left flank : | # Right flank : GGCATGAAGCGGCGCGGTTCGGATATGTCCCCTTCGGCTTCCGTGTCCGTATCAAATAAAAACAGCCTTGAGGTTTGTCCCTCAAGGCTGTTTTTTGTTTTCGGTTTCGGAAAAATCAAATGCCGGTGTCGCCCAATATGATGCCGTCCGGCAATGTGGTTTTTCCGAGCGTGCGGATGATGCTGCCGTTGGGCAGGGGATAGAAGCGCAGGTCGTCTTGTTTGGCATCGAGCATTTTGCATAATGTGTCAAAGCAATTCCGGGCTTCGGCGCGGCTGCCGATGTGCAGGAATACGCTGTTTTGCAGCGGGACGGCCTGCTGTGCAAGGTATCGGTGTGCTTTTTGCAGGCGGTGCGGATCGGCGATGTCGTAGGCTATGAGGTGGCGCATGTTTATTCCCAAACCTTGAGCGCGCCCAATCGGATTTCGGGCTGACCACTATATTCGGCGAGGTTTGCCAAATGACCGGCGCAAAGTTGGTGGATTTGGCCACGCCATG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACAAATCGGGGATTACGAC # Alternate repeat : GTCGGAAGACTTGCCCCACAAATTGGGGATTACGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 1 16132-15752 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACDY02000007.1 Neisseria cinerea ATCC 14685 N_cinerea-1.0.2_Cont6.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================ ================== 16131 37 94.6 31 C..............T..................... GCATTAATAATCTTATTAATACCAATAGTAA 16063 37 100.0 31 ..................................... GGCAAAGACCTACCTTTAGGTAGGCTGAATT 15995 37 100.0 32 ..................................... ATCTTGGGCTTCCTCCCAGTCGAAGTTACCCG 15926 37 100.0 32 ..................................... TCAAATCCTTCAACATCGAAAGCTTAGCGACA 15857 37 100.0 32 ..................................... GCAACAATAGTGATGATATGACGGATTTTCAT 15788 37 81.1 0 G..................T...........A.AAGT | ========== ====== ====== ====== ===================================== ================================ ================== 6 37 96.0 32 TGTCGGAAAACTTGCCCCACAAATCGGGGATTACGAC # Left flank : CCGTCCGCAGCCTCAAACCCGGCCAAGTCAGCGCGCCCGTACGCACCCAGTTCGGCTGGCACATCATCAAGCTGAACGAAGTACGCGAGGCCGGCACGCCTCAGGAACGCGTCCGCAACGCCGTGCGCCAGTATATTTTCCAACAGAAAGCGGAGCGTGCGACCGCCGACCTGTTGCGCGACCTGCATTCCGGTGCCTACGTGGACATCCGCTGAAACGGTCGGGACTGAAAAGCCGTGCCGTCCCGACAACCTTCGGGCGGCACGGCTTTTTCAAACTGCGGCGGCAGACGGGCAGACGAAGCGGCAGAACATATTGAGAAAAATACACAAACGCCGTATAATCCGCCGTACAAGTTTTCCGGCGGACGGTGAAAAACCCGTTTTCCGGCTGCTCTTTAAGTTAATATTCCGTTAAACAATGTTTTTGATTGTTAAGAAAAAATTTAACCTTTTTTAACTTTTAAGCATTTGAAAATAATGGAATTTTCTAACGGGATG # Right flank : AAAAACGGACGGCATATTTGCCGTCCGTTTTTTGTTGCCGGAGTTTGCCGTATCGGGGTTCAGACGGCATTGCCTGCCGTTGTACCCGCGGGTGCGACTGCCTTGATGTAGTTGAGTGAGACAAACTGCTTCTCGGCATCCAATTCGGTGATTTTGAACAATGCCTGCGATTTGGGCAGCGCGTCAAACGGAATACCGGTCGCGCGCGTGACCAGCGGCAGGCCTTCGATGCGGACGAGGTCTTCTTTGAGGATGGTGGCCGTCAGCTCGCTCGTGCCTTGCTGTTGCAGGTACACGAGGCTCCAGTAGGCTTCCATTTGGCGTTGGAAGTCGGCGTAGGCTGTATAGGCGGCATCGAAGTCGCGCAACGCTGCGAAAAGCTCGGCATCGCTGTTTTGATACAGCGGCTCGGCAGAATCGTCGATCAGGCTGATCAGCTGCTTTTGGTTGATGTAGTCGGCGGCGCGGCGCAGCGGCGAGGTAAACCAGCCGTAATGTTG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCGGAAAACTTGCCCCACAAATCGGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 84528-83371 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACDY02000005.1 Neisseria cinerea ATCC 14685 N_cinerea-1.0.2_Cont4.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 84527 36 100.0 30 .................................... CCAACGTTGAGTAGCGTGGTTGCGTCAGCA 84461 36 100.0 30 .................................... TATGCGACCATGGCGGGCATAAACAACACG 84395 36 100.0 30 .................................... GGCAGCGGCGACATTACGGAAGTCGCCAAC 84329 36 100.0 30 .................................... TCCCCAAAACATAGCTGCCCTTTCTTTTTT 84263 36 100.0 30 .................................... TGTGTCGGTTATTTTGTGACATAATTGTTC 84197 36 100.0 30 .................................... CACAGGAACGCTCACAGACGCGTTTAGCTT 84131 36 100.0 30 .................................... CTTCGGGCTTACTGTAATCTCGAATGTTAA 84065 36 100.0 30 .................................... CTTCGGGCTTACTGTAATCTCGAATGTTAA 83999 36 100.0 30 .................................... CTTCGGGCTTACTGTAATCTCGAATGTTAA 83933 36 100.0 29 .................................... TATTTTGTTGCACGAGATGTCGATTTTTC C [83924] 83867 36 100.0 30 .................................... CTGCCACCACTTTATCGTGGTGTGCTTTAT 83801 36 100.0 30 .................................... ACAAGCCGATTGGATTCCCATCATGAGCAA 83735 36 100.0 30 .................................... ATATGGTAATGGGCGCCGACCAAATCGCGA 83669 36 100.0 30 .................................... GCCAACAAGGTGAACAATGCAACAATCAAT 83603 36 100.0 29 .................................... AAGCCTGAGCAGAGCATTTTTTGATTGCA 83538 36 100.0 30 .................................... TGCGCCAAAGCATACTTGTCTAAGTTTGGT 83472 36 100.0 30 .................................... AAGCCGAAGAAGTAAAAGTTCACATTTTGA 83406 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 100.0 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : AACGGGGCAGCGATTGCAAACGCAGGGAAGAACGCGACATGGCAGGACTGTCCGAACGCATGGCGGCAGAGTTAGACAGGCACGGGGCCGCCGTATTTTTCCGGGAATATCCGAATGCCAACCACGGCAATGTCCCGTTTCACTCGCTGACCGACTGCGTTGAATATTTGAGGAAGGCTTGGCAGAGGTAGGGAATCAGGGGTGGGCATAAAAGGCTTATCGCAAGATTGGAAGCCAAGGAGACCAAAAAAGCCGTCATCGCCGCATTGATGCGTAGGCTTGTCGGTACGTACCACATAGACAAGAAAATCGAAGATGACGGCTTATCGTGTTGTAAACCAGCGTAAATCCCGATAAGAAAAAAGGCATTTCTTTTGAAACGCCCGCCTTGCCGCGTGTAAAATCCTTTCAATTGTAAGGATTATGTTATTCGATTAAAGGAGTATCTTTTCCATTTCGCAGTGCTACAATCTGCCCCCCTAGATTGCTGGACTTGACCC # Right flank : ACCCCAACGGGAAATCCTTATTATGTAAGGGTTTCCCGTTTTATTTGTTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCACCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCAGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGATCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGCAAGATTTCAGGCAATTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGGAATGAAGAAACCATTTTGTCGATGGCGGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1711-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACDY02000003.1 Neisseria cinerea ATCC 14685 N_cinerea-1.0.2_Cont2.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 1710 36 100.0 32 .................................... GATTTCCTCTAAGCCATCAACATGGTTGTTAT 1642 36 100.0 35 .................................... CAGCTTATCAACCTCTACCGCGTCGTTCAGCATCA 1571 36 100.0 34 .................................... TACGAATATGAGCAGAATATGCAAATTGTTCTTT 1501 36 100.0 34 .................................... AATGCGGCCTTTGCCAAACCAGCCATCTTCAAGG 1431 36 100.0 34 .................................... TAGAAGCTACCAATACGCTCATCAAAACTGATAT 1361 36 100.0 34 .................................... TTCGAACGAGTACGACATTCCCTTCTCCTTTCTT 1291 36 100.0 34 .................................... CTTCCTTGATGGCGTTTGTGGACGGACGTTTGTT 1221 36 100.0 32 .................................... CCAGTCGTGGGTCAGAACGGAAAACGGTTTCT 1153 36 100.0 34 .................................... CGGTTTCCATGCAGTGGCACGTACCCGTGATACA 1083 36 100.0 32 .................................... TATCGGAATACCATGCACGGGTCATAGTTAAC 1015 36 100.0 33 .................................... AGGACGGTCAGACAATGCAACCCCACATGCATG 946 36 100.0 35 .................................... CTCTGCCTCAGATTCAAAGGCCATCAGAGTTTTTT 875 36 100.0 32 .................................... GCAAAATCGTGAGGTCTTAACCACGGTTCCAT G,C [846,858] 805 35 97.2 34 ...........................-........ ATAGACCGTTGGGTCGTCAGTGCAAGCCCATGCC 736 36 100.0 34 .................................... ACTTCTTTCAGCTGCATATTGCCAGCCTGTTTGA 666 36 100.0 35 .................................... TCGGATTCGAACGTTCATTCTATGCAAATCTGGAA 595 36 97.2 33 .......................T............ CAATGAAATGAACTGAACCTCAAATTTGTTGAA 526 36 100.0 33 .................................... TGGTTAGGATAAATAGCTTCCGACTCAGTTTAG 457 36 100.0 36 .................................... CAGTCTATTACCCAGTCATCATGCTTCAGGTCGTGT G [433] 384 36 100.0 34 .................................... TCAACAGTGCTTCGTAACCTTTGCTCAGGCTCAA 314 36 100.0 34 .................................... ATTCGTTTTTAGCGACCTCGTAAGCTTTTTCGGC 244 36 100.0 32 .................................... CAAGGGCGAGGGTTGTTCGGATTGCGTACTTC 176 36 100.0 33 .................................... TCGTCTTGGATTGACACAATGATTTCAGGTTTT 107 36 100.0 34 .................................... CTCACTCGGTGTGGAAGTGCAAACACAAGTCCCG 37 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 25 36 99.8 34 GTCGGAAGACTTGCCCCACAAATCGGGGATTACGAC # Left flank : ATGGCAAGAAAGAATGGAGGAGCAACCAAACAAGGTCATAGGCAACCAAGCACACGACAAACTCTATCAAGAATGGAAGGCAGCCCTGCAAACCGCTGCAGAAAGCTCCGATTTGAGCGCGGAGCAGAAAGCCGAAATCGCCGTTACGTTTGCCGTCAAAAAGATGATGGCAAAATACGCGAAATGGCTGACTGACAAGCGCGGCAAAGACCTGAAACCCATCTTGGCGAAGCTGCGCGGCGAATAGATTTTCGTCTTTGTCTGAGCCCGAGCTTTTCAGACGGCATAAAGTCGCAAAACGGTTAAAAACCGTTGTCGAATGCAAAGCAGACGGCTATAATCCGCAACACAAGTTTTCCGGCGGACGGCTTAAAGCCCGTTTTCCGGCTGCTCTTTAAGTTAAGATTCCGTTAAACAATGTTTTTGATAGTTAAGAAAATTTTTAACCGTTTTTAACATTGCAGATGTTTGAAAACATTACGGTTTTTTGACGAGGCGCA # Right flank : CG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACAAATCGGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //