Array 1 21419-21986 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCOU01000023.1 Pseudomonas aeruginosa strain CPa12-1 Scaffold23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 21419 28 100.0 32 ............................ AGGTCGAGCAGCCGAACAAGTTCGGGTTGATC 21479 28 100.0 32 ............................ ACGTCGAGAAAGTGCCGCCCTTCCTGTACGAA 21539 28 100.0 32 ............................ CTGACGATCTGGCCGACCGGCTGAAGTCTGCC 21599 28 100.0 32 ............................ AGCGCCTGGACAATGCGCAGCCCAGGCGCTGG 21659 28 100.0 32 ............................ AGCATGGGAAACCCGTCAAGGCCCGGATACTG 21719 28 100.0 32 ............................ TGAAGGCGTATCTCAAACACACCGAGTTTCAG 21779 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 21839 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 21899 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 21959 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTCTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 32269-30501 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCOU01000023.1 Pseudomonas aeruginosa strain CPa12-1 Scaffold23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 32268 28 100.0 32 ............................ AAGAAGAGGGGCGCTGCCTGATTCAGGAGTGC 32208 28 100.0 32 ............................ CCCTCAAGTCGAAGCGCTCCATCGAGCAGAAC 32148 28 100.0 32 ............................ ACCAATGGACCAGCAATCGAACTCAAGAACGA 32088 28 100.0 32 ............................ TGGCGGCATACCGTCGAGGACTGAAGCCTGAC 32028 28 100.0 32 ............................ TTATCCATCGCTGCGCGCCCTCCTCGGCTCGT 31968 28 100.0 32 ............................ ATGTCGCGTCGTCGATGTGCTTTGTGGGCATC 31908 28 100.0 32 ............................ GGTGTCCCGGGCACCCTGCTGGACCTGTTCAC 31848 28 100.0 32 ............................ TGGCCCGAACCCGCCTGCGCCTACAACGCGAT 31788 28 100.0 32 ............................ CCACCATGTCGGCGGTGATCGTCACCGGCACC 31728 28 100.0 32 ............................ AACTGGTCGTGGCGCGGGATCACCGACCGACG 31668 28 100.0 32 ............................ AGATCACCGAGCGCTATTCGGAGCCGGCCGAA 31608 28 100.0 32 ............................ TCTTCGCGTCCCTGGCCTTGGCTCGATACAGA 31548 28 100.0 32 ............................ ACCGAATCCGCGACTCGTACCGAGTCGCAAAC 31488 28 100.0 32 ............................ GGGTGGCGGAACCGACTGCCGAATATCACTCC 31428 28 100.0 32 ............................ CTCTCCTGAGCGCTGAGGATGCAAGAGCCCGC 31368 28 100.0 32 ............................ TTCCGCCAGTTGCCGAAGCGCCCGAAATAGAG 31308 28 100.0 32 ............................ TGAACAACCCGGCGCTGCGCGACTATCTGCCG 31248 28 100.0 32 ............................ GGCAAGCCATTGATCAGCAGGCCGGTATTCGG 31188 28 100.0 32 ............................ TATGCCGCCCAGCGTGCCGCCCAGGGCGCCGC 31128 28 100.0 32 ............................ ACGAACAGCGCTGCGAACTCGCCAAGGTCTGG 31068 28 100.0 32 ............................ TATCGAAGAGTGATCTGCGCTGCTGTGGCGCA 31008 28 100.0 32 ............................ ATGGTGCTGTGGGAGCGTGGCAGCGAGTCGCT 30948 28 100.0 32 ............................ ATAGAGGATCAGATAGCGCCCGACATGCCCGG 30888 28 100.0 32 ............................ TCGTAATCATTGAAGCCCCGGGCAAGCTGAAA 30828 28 100.0 32 ............................ ATGGGGTCTACATCAGCGATGCGGCTCTGTCC 30768 28 100.0 32 ............................ ACTTGCAGAAGCCCCAGGACTTGAAGCCACTG 30708 28 96.4 32 C........................... ATCCGTCACCGGAATTTGCGCGTTGGCCGTGC 30648 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 30588 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 30528 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 30 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAACTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //