Array 1 14917-11955 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJMF010000037.1 Lactobacillus gallinarum strain An338a An338a_contig-110_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 14916 32 100.0 34 ................................ TAATGCTGCTACAAATGCGTTTGGTGCCGTTCGT 14850 32 100.0 35 ................................ TTGAACAAATAACTTGTAGTCTCTACTTTTATCAG 14783 32 100.0 34 ................................ TGGAGTACCATTATCGCTAAATAGACCAGCTCGC 14717 32 100.0 34 ................................ AAAGACTAGACGACTAGGCTCCGCAGTAGATAAA 14651 32 100.0 35 ................................ TCTGGTGTCTTATTGCCAGTAACTACATCAAGCAC 14584 32 100.0 34 ................................ GTTGACCTAATGTCTCTCTAGGCTTTTTCTGAGC 14518 32 100.0 36 ................................ ATTATCCAATTGCGTAGCTTGATAAGCACCTAAGTC 14450 32 100.0 35 ................................ TATTAATATTGGTGATTTACCTAAGACTTGGCAGC 14383 32 100.0 34 ................................ GTTGACCTAATGTCTCTCTAGGCTTTTTCTGAGC 14317 32 100.0 35 ................................ CACAGACCAGCAACGGTTAAAGCCCATCCATTAGG 14250 32 100.0 35 ................................ AATTAGCTGATCCATTAGGTGGTATTAAATAAGCC 14183 32 100.0 35 ................................ TTAGTCTCCGTGTTGTAAGCATTACGTGCATCATC 14116 32 100.0 35 ................................ TCATGATCAATAGCAACCAAATTGACATTAAGTGT 14049 32 100.0 34 ................................ CACGTCAACAAATTAACGGCGGTAAAGTCATGAT 13983 32 100.0 35 ................................ TCTGCCAAATAAGTTAAAGTACCTAAATCAATGAA 13916 32 100.0 34 ................................ AAGAGACACCCAGAGTATTTAAACAAGGATTGAA 13850 32 100.0 34 ................................ CGCTTGGGCTTTGCTTGGTTTGATGATTTTATAC 13784 32 100.0 34 ................................ GATGCTCCTTTAGAAATTAAATTCGATTTAATGA 13718 32 100.0 34 ................................ TTTGAACTCATTTATCAATTGCATTGGTTTAACG 13652 32 100.0 35 ................................ AAGAGAGCCGACAAACAAGCGCTTGACTGGTGGTC 13585 32 100.0 36 ................................ TTACTTTAGAGAAGTTAAGGCTTTAAGAACTATGTA 13517 32 100.0 34 ................................ GTAAAACCAACATCATGATAAAAGCTTGTGCAGG 13451 32 100.0 35 ................................ TTATACAACTTATGAAAAGCTTTAACTGTCGCTTT 13384 32 100.0 35 ................................ ATAAGTAGTAACACCGGTATTATCATCAGTAATTG 13317 32 100.0 34 ................................ ATAAGTAGTAACACCGGTATTATCATCAGTAATT 13251 32 100.0 35 ................................ TGATGAAGAAATTAATGTTGGGGCATTAATGGAAG 13184 32 100.0 34 ................................ GCTATTATCAAGCTGACACAAGGCACTGACTACC 13118 32 100.0 34 ................................ AATTACGCTGTCCATTAAATTAGCAATTACTTGT 13052 32 100.0 35 ................................ AGAGACTTAGAAATAATGTTGAAATTACTAGTGCA 12985 32 100.0 34 ................................ GTAAAACCAATATTATGGTTAAAGCTTGTGCAGG 12919 32 100.0 35 ................................ CTCATCGGTTAATCTTTAAATCTAGCACCCCTTTA 12852 32 100.0 35 ................................ GAACTGAACTTTCGGTTTTAGTTGGCCCTAGTATT 12785 32 100.0 35 ................................ ACAAAAAAAGAACTCGGATACATGCTAAATGATGT 12718 32 100.0 35 ................................ AGAAAATATTTTAAATGGTTATCAGTGTTTGCGAC 12651 32 100.0 35 ................................ TAAGTTAGAAGATGTTAAAACACTTGTCAGCTATA 12584 32 100.0 35 ................................ AGCATGATATGGTATACTATCAAAACAATGAGGTC 12517 32 100.0 34 ................................ CATACAATCTCCGCTGCTTGTTTGTCGATAATCG 12451 32 100.0 34 ................................ TAACATTAAACATTCGATTGCTAAGACAAACCCT 12385 32 100.0 34 ................................ ACTTATCGCAAGCAAGTTTTGAGATGTCAATGGC 12319 32 100.0 35 ................................ ATCCACGTTAACGTTAAGGTATGATCCGCCATTAA 12252 32 96.9 35 .........C...................... TTATTAAACCAGTCGTACGCAGGATTAATAATCTC 12185 32 96.9 35 .........C...................... AAGACTACTTAATCACAATCGATATGGCCAAAGAG 12118 32 96.9 34 .........C...................... ATGTGCGTCTTGCAACGAAAGCAAAAAGACTAAG 12052 31 93.8 35 .........C.......-.............. CCAGTAGTGGCATCTTCCACAGCTGGTGACCATGT 11986 32 96.9 0 .........C...................... | ========== ====== ====== ====== ================================ ==================================== ================== 45 32 99.6 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : GGAGATCTTGATGAATACCCACCGTTTATGTGGAAGTAGGTATGCAGCATGATGGTAGTAGTTAGTTACGACATTAATACGGAAAGTAAATCCGGTCAACGAAGGTTACGTCATGTAGCCAAAATATGCTTAGATTATGGACAACGAGTTCAAAATTCCGTTTTTGAATGTAAAGTTAATTCGATGCAATTAGAGTTGATGAAAGAAAGACTACTAGACGAAATCGATGATAGCCAAGATAGTTTGTATTTTTTTAATTTAGGGAAGAATTATAAAAATAGAATTAAGTCATATGGAATTAAAGAGGTTATAAATTTAGAATCGCCTGTAATATTTTGATATCGGTGCGAACTGTATGTGAACATGCTTTTAGTGAAGATTCGCACCAATTTTAAACAGGTGAAAAGTGATCTTTTGATAAAAAATATATTTTTATCAGGGTAAGTTAATTTGAAACCCAATATTTAGAAATGAATTGAAATCATGATCTAAATATTGTG # Right flank : TGCTAAACATGCTCTAGCTTCCATTTTTGCTTGATGTCGCACTCCTTGTGATGCACTTGTGGGTGTATTAGTCGGTTTCTTCAACCCAGGCTTGAAGTACTAATTATTAAGAGGGGATTATTCAGATGACAATCGAAGAGATACAAAAAGGCTATCAAAATGAAGTTGATTATCAAAAACATGTGTTTCGCAATCTAGGCTATTGATTCCAACTCTTTTTAACAGTTAGTGCGATTGGTTTGGTTTTAATTTACTATTTCCATCGATCAACTATGTGGCTCTTTATAATCGGAATTATTCTGATGGTCGCCGGTGTTTTAGGAATGTTTGTTTTTGGCCATGCTTCTTGGCGCGGACGGCAGAATGTCACTCTGGTAACCGAAGACTATGAGAAAAAGATTGCAGAAATTAAAAAGTTAGATCAAAATGCTTTCGGAACGGAAAAGATTCGTTTCAGATGATTCTTATATGAATAAAACAATTTCCCCTTCTCTAGACAT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //