Array 1 91-451 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBDB010000012.1 Bacillus pumilus strain J33-1 contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 91 32 100.0 34 ................................ TAATACCACAATCAAAATTGCCGTCAATCATTTT 157 32 96.9 33 ...........A.................... GATATTCCGTGCTTTGATTAATGCATAATAAGG 222 32 100.0 34 ................................ TTTTATTGTGTTATCTTTAGTGAATTTTCTCATT 288 32 96.9 33 .......................A........ CTGCGCATGTCGCAACCATCCTTTTTAGTCGTG 353 32 96.9 35 ...........T.................... ATTGACGCTTTACTTTCATATAGGCTGTCATAGTC 420 32 90.6 0 .............A......A..........A | ========== ====== ====== ====== ================================ =================================== ================== 6 32 96.9 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TTATAAAGGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCTG # Right flank : ATTTGAATTGGCAGCATCATAGACCAAGTAACCCCAGAACTGGCTCAGTAGTCCATATTTTTAAATGAATTCAAAGCTGTTGATGAAACAGTGAAATAAGTATGTTTTCAAGAGCAATAGTTTTTATTTAAATAGGATTAAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAAATTATATTTTATGAAAGGGAAAAACAAAATTCTTTATTGAAATTTGAGGATTTTGACTATCATTTCCTAAAAAATGTTATAATTTAGGGAAGAAATCGCAGTCGCACTCTAAATGAGTGCGTGGATTGAAATGACACCGAACAAACATTCTGTTAAAATGTTTTTGGTCGCACTCTACATGAGTGTGTGGATTGAAATATGTATCCAGAAATCATCGACTTTCTAATTTGTGTCGCACTCTACATGAGTGCGTGGATTGAAATGTGATCGGCACGAGA # Questionable array : NO Score: 8.80 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 773-1001 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBDB010000012.1 Bacillus pumilus strain J33-1 contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 773 32 93.8 34 ...........A.......C............ GACACCGAACAAACATTCTGTTAAAATGTTTTTG 839 32 100.0 33 ................................ ATGTATCCAGAAATCATCGACTTTCTAATTTGT 904 32 96.9 34 ...................C............ GTGATCGGCACGAGACCCACGTGCATATGGGGTG 970 32 87.5 0 ...........T.........A...A.A.... | ========== ====== ====== ====== ================================ ================================== ================== 4 32 94.6 34 GTCGCACTCTACATGAGTGTGTGGATTGAAAT # Left flank : GTGAATTTTCTCATTGTCGCACTCTACATGAGTGCGTGAATTGAAATCTGCGCATGTCGCAACCATCCTTTTTAGTCGTGGTCGCACTCTATATGAGTGCGTGGATTGAAATATTGACGCTTTACTTTCATATAGGCTGTCATAGTCGTCGCACTCTACAAGAGTGCATGGATTGAAAATTTGAATTGGCAGCATCATAGACCAAGTAACCCCAGAACTGGCTCAGTAGTCCATATTTTTAAATGAATTCAAAGCTGTTGATGAAACAGTGAAATAAGTATGTTTTCAAGAGCAATAGTTTTTATTTAAATAGGATTAAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAAATTATATTTTATGAAAGGGAAAAACAAAATTCTTTATTGAAATTTGAGGATTTTGACTATCATTTCCTAAAAAATGTTATAATTTAGGGAAGAAATCGCA # Right flank : TTCTTGTCAGTAGGTAGCTTGAAAGATTTATTGACATTGCGCTTGATATAGGTGTGAAAAACATAAATCTGTCTCAGCCATTTTATTAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATGATTATCATCAGTAGTAGTTTTTAATTAAATAGGATTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGGGCATTCGCACCTTTTCATTCGACAAAATTGAGAAAAAATGTATATTATTTAAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTGGCTATGATTCCCTAAAAACTGTTATAATTAGGGCGGAAATCGCAGTCGCACTCTATATGAGTGCGTGGATTGAAATCTGAAAGTGTTCTCACTGTACGGATGTCATAAAGTCGCACTCTATATGAGTGCGTGGATTGAAATTTCGAATAGCTTTCCAGAGATAACAAGTCTCCCTGTCGCACTCTATATGAGTGTGAG # Questionable array : NO Score: 6.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.73, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1347-1509 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBDB010000012.1 Bacillus pumilus strain J33-1 contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 1347 32 100.0 33 ................................ CTGAAAGTGTTCTCACTGTACGGATGTCATAAA 1412 32 100.0 34 ................................ TTCGAATAGCTTTCCAGAGATAACAAGTCTCCCT 1478 32 87.5 0 ...................T.A...A.A.... | ========== ====== ====== ====== ================================ ================================== ================== 3 32 95.8 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CTACATGAGTGTGTGGATTGAAATATGTATCCAGAAATCATCGACTTTCTAATTTGTGTCGCACTCTACATGAGTGCGTGGATTGAAATGTGATCGGCACGAGACCCACGTGCATATGGGGTGGTCGCACTCTATATGAGTGTGAGGAATAAAATTCTTGTCAGTAGGTAGCTTGAAAGATTTATTGACATTGCGCTTGATATAGGTGTGAAAAACATAAATCTGTCTCAGCCATTTTATTAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATGATTATCATCAGTAGTAGTTTTTAATTAAATAGGATTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGGGCATTCGCACCTTTTCATTCGACAAAATTGAGAAAAAATGTATATTATTTAAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTGGCTATGATTCCCTAAAAACTGTTATAATTAGGGCGGAAATCGCA # Right flank : TTCTTGTCAGAAGGTAGTTTGAAAGATATATTGACAATTGCGCTTGATATAGGTGTGAAAAACATAACTCTGTCTCACCAATTTTATTAATGAATTCAAAGCTGTTGATGAAATAATGAATAAGTATCTTTAGAGCAATTAAATAGGATTAAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTTTATAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTGGCTATCATTCCCTAAAGAATGTTATAATTAAGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATAATCTGTCACTGAAATCATCTATTGAAAAATCGCGAGTCGCACTCTACATGAGTGCGTGGATTGAAATATATAGCCGTTGTCTTTTTGGTCGACCCAGCGAGTCGCACTCTACATGAGTGTATGAATTGAGGTAGCT # Questionable array : NO Score: 8.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 10793-11027 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBDB010000012.1 Bacillus pumilus strain J33-1 contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 10793 32 96.9 36 ............G................... CATCAATTATACTTGAAATAAATAAAGCGATTAAAA 10861 32 100.0 36 ................................ ATCGATCCTTACCGGATATTGCTCCAGGAGTTTAGT 10929 32 100.0 34 ................................ CCCTTCAGGGGATGATTTTTCCCTTTTGACATGT 10995 32 90.6 0 ...................T..A....A.... | T [11024] ========== ====== ====== ====== ================================ ==================================== ================== 4 32 96.9 36 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GTTGAAATCTGAACCATTAGAGTTATTACCACTACCATTCGGGTCGTACTCTACATGAGTGCGTGGATTGAAATAAAACTCCTTCCAAGTCTGCCAAATCTGCATTCTTGTCGCACCCTATATGAGTGCATGGATTGAAATGCAAAGGCCAGCATGTCGTCAAGAAAGCTTTGCGCGTCGCACTCTACATGAGTGGATGGATTAATAATTGCGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACCTTCGCACCTATTCATTCGACACAAATGAGAAAAAATGTATATTTTTTAAGAGTGAAAACAAACTTCTATATAGAAACTTAAGGATTTTGACGATCATCCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TTGCGAAAAACATAACTCTGCCTCTCAGTAGTCATGTATTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGTTTTCAGACTAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGAGTGAAAACAAAATTCTATATAGAAACTTGAGGATTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGAGAAAATCGCAGTCGCACTCTATATGAGTGCGTGGATTGAAATTAATCGTGACCCGCTGCTCAGGTGACATGTAGTGGTCGCACTCTATATGAGTGCGTGGATTGAAATTACAATCTTCCCAACCTATACTTGAAAGAACTTTGTCGCATTCTACATGAGTGCGTGGATTGAAATCTATTAAAAGCGCTATATGCCTCTAACAGCTCCGTCGCACTCTACGTGA # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 11314-11542 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBDB010000012.1 Bacillus pumilus strain J33-1 contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 11314 32 100.0 34 ................................ TAATCGTGACCCGCTGCTCAGGTGACATGTAGTG 11380 32 100.0 34 ................................ TACAATCTTCCCAACCTATACTTGAAAGAACTTT 11446 32 93.8 33 ......T....C.................... CTATTAAAAGCGCTATATGCCTCTAACAGCTCC 11511 32 93.8 0 ...........CG................... | ========== ====== ====== ====== ================================ ================================== ================== 4 32 96.9 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TGGATTGAAATCATCAATTATACTTGAAATAAATAAAGCGATTAAAAGTCGCACTCTACATGAGTGCGTGGATTGAAATATCGATCCTTACCGGATATTGCTCCAGGAGTTTAGTGTCGCACTCTACATGAGTGCGTGGATTGAAATCCCTTCAGGGGATGATTTTTCCCTTTTGACATGTGTCGCACTCTACATGAGTGTGTAGATTAATAATTGCGAAAAACATAACTCTGCCTCTCAGTAGTCATGTATTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGTTTTCAGACTAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGAGTGAAAACAAAATTCTATATAGAAACTTGAGGATTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGAGAAAATCGCA # Right flank : TGGTGAATGGTGGGAAAAGACAGGAAAGCCTGGTGTCGCACTCAACATAAGTGCATAGATCACTGTTTCTGCGAATTACATAAATTCAAATATCTATCCACTTCAAAATCTACACAAATGAATAATCAAAATAATGTACTTTCCCCCTAAATCCAGGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATTGCGACAAAAGGATAGTGCCCTTTGCTGCGGTAGCGCAAATCAATGAACCGCACTTCATAATGATCCTTGTATTTATCTACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCAGAAATGTTTTCATCTTGCTTGGCAATCTTCATAATTTCAGTATCAGGGACCGGCACCCGGTTAAAGGTGTCTAAAATGACGACCTCTCCATTCATACT # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //