Array 1 2747-2989 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADGKF010000223.1 Actinomyces bowdenii strain WMus004.1 NODE_223_length_4636_cov_24.442005, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ===================================== ================== 2747 34 100.0 37 .................................. GCCGCATTCACCGTGATAAGACTCACGATGAAGAGGC 2818 34 100.0 35 .................................. TGCGCGGAGTGACGGTGGTGGTGACCTGCTGAGGC 2887 34 100.0 35 .................................. TGCGCGGAGTGACGGTGGTGGTGACCTGCTGAGGC 2956 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ===================================== ================== 4 34 100.0 36 AGAAGGCACCCCGCGCCATAAGGTGCATTGAGAC # Left flank : CCCGGCTCAAGCCGCGCAAGTAGCCCGTGAGGAAGAACTCCAGTGGTGCTGTGGCACCGCGGCAGCACTGGCGCCCTGAGGCCTTTGCGCGGGGCGGGTGGTCTTCTCTGGCATGCCAGCCCGGCGGGATTCCGGTGGGCCCGGCCCGGGGCTGACTCGCCCGGGCTGTGACGCCGATGGATGAGGCTCCCCGGGTGATGGCGGGAGGTCCCGGGAGGGGCTCTGGAGGGAGTGCGAGGGCACTAGCGGAGGAGCTTCTGGGACTTGAGTCCTGGATATCGGATGTCTGATGTTGGTGGGGGAGGGGGACTTTTCCGCATGGTCTCGTTGGATTCCGGGTGACGGGGGCTCTGGAGGGGCGTCGCTGGCGCTGTGGTGCTGACCTGCGCGGATGTGGTACAAAGGGGTCTGTGCCGGGGCGGTCTGGAGGGTGCCGACGGGTCGCCTGCGCTGCGCCTCGCATCACTGCTGGTCACAGGGGGTGGTTCGAGGGGTGGGGC # Right flank : CCAGGGTGCTGCCATCGCAGAGCTTGAGAATGGAGTCAGGAGGCGCCCCGCGTGGGTCGGTTCTCTGCCGGGTCGGTCGTTTTCTGCTGGGTGACTTGCATTCTGCCCGTTGAGATCCGCCTATCTGGGCCAGCGGGATGCGGGTGACCCAGCGGGATGCGGGAGACCCCGCGGCATAGCGTGTGCGCCCCTCATAGCCGGAGTGACCGGGAGGGCCTCGACGGGTCTCCAGCAGTGCGCCTCGCATCACTGCTGGTCATGAGGAGGTGGTTCGAGGAGTGGGTGCATCCTATGCCTAAAGGCATTCGCCTCGGTCGCTGAGCAGTTCCCTGCATGGTCTCTGGGGCGGAATGTCATTCCCTCCAGTGACAGGTGACCCGCCAAAGACTGGATGTCCCGTGAGCGGGCCTTCTGTGTAGTAGGGTGACGGGGCGCTCTATAGTGTGCTCAGTCGCCCGCCATGCTGACTCTGCCGGGAGCGCGATGCGCATCGGTGCGAG # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAAGGCACCCCGCGCCATAAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.00,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 580-119 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADGKF010000227.1 Actinomyces bowdenii strain WMus004.1 NODE_227_length_4568_cov_14.970502, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 579 37 100.0 35 ..................................... GGCGGACGGACGCCCTTTACTGAGTTCAGTGACTC 507 37 100.0 33 ..................................... CGCGGGTCTCCCATGGTCTGCCGCAGGCGCGGA 437 37 100.0 35 ..................................... TAACCCCCTCCTGGGGGTCCGGAAGGTTCGCAGGC 365 37 100.0 34 ..................................... TCGATGTGAGCCATGATCGGCTCCTCTCTGCCCC 294 37 100.0 32 ..................................... TCCGGCCGGCGGACCACGAACCCCGCTTCGAG 225 37 97.3 33 .............G....................... GACCCCCTCCGCGGGGGCGCTAATCTCCCACTC 155 37 94.6 0 ...................................GT | ========== ====== ====== ====== ===================================== =================================== ================== 7 37 98.8 34 GTCAGAAGGCACCCCGCGCCATAAGGTGCATTGAGAC # Left flank : GTCACCCGCCTTCCGCTCGGTCACCCGCCTTCTGCGGGGTATCCCGTATCCTGCTGGGTCACTGGCGCTGTTCTGGTCCAGCGGGATACGCGTCAGCAAGCGGAATGCGGCTGGCCCAGCGAGTCTCGGGCCACCCCGGGCGGACCGGTTTCGCTCGCCGGTCGTCCCGAGCAACGACGGCGTTGCGGCGGGGGATGGGCGCCGGATGCGCAGAGGCGCGGGACTGGAGGTACCGGCCGGGCTGGCGGGATGGGCAACGGACGGGACTTTGGTCCTGGATATCGGATGTCTGATGTTGGCGGGGGAGGGGGACTTTTCCGCATGGTCTCGTTGGATTCCGGGTGACGGGGGCTCCGGAGGGGCGTCGCTGGCGCTGTGGCGCTGACCTGCGCGGATGTGGTACAAAGGGGTCTGTGCCGGGGCGGCCTGGAGGGTGCCGACGGGTCGCCTGCGCTGCGCCTCGCATCACTGCTGGTCACGGGGGGTGGTTCGAGGTGTGG # Right flank : TTTTCTCACCGGGAGGGTTGGTGGAGGGTGAGGATGACTAGCGCGGCGGCGGTGATGGCGGTAATGCGGTGGGGTGAGATGGTGACGTATCTGAGGGCCTTAAAGCTCTTGAGCAGGGC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAGGCACCCCGCGCCATAAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 149-908 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADGKF010000324.1 Actinomyces bowdenii strain WMus004.1 NODE_324_length_1767_cov_21.469512, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 149 37 100.0 33 ..................................... CTCTCTCGCTCCTCCTCCGAGGGCTCAATTGAC 219 37 100.0 32 ..................................... TCAATGACGCCAAGGAGCCACTGAGCATTCCG 288 37 100.0 35 ..................................... TCAAGGGCACTGGTAATAGCGGGGGTGCTGGTGTT 360 37 100.0 36 ..................................... TAGTCATGAAGTGTCACGACGAGGGAGTCCTGGTCC 433 37 100.0 36 ..................................... ACAACTACGACGTTCCCAGACTCGGCCATTTTTCTT 506 37 100.0 36 ..................................... CCCGGAGCAGGAGATGGATCCTTGCCCCAGCGGCGT 579 37 100.0 37 ..................................... TCCCCTTCTCCATCAAATCGTTCAGCAGCTGCTCGGG 653 37 100.0 34 ..................................... TCCTCCAAGGAGAGGGTGTAAGCCAGGAGGGCTA 724 37 86.5 39 ..T........T.A.....A............C.... GCTAGAGTCGTGCAGGTTGCCCCCCCCCACCAGCCCACC 800 37 89.2 36 .............G..T.....C............G. TCGTCACTGTCCAGCTTCTGCTTCTTATAGATGATG 873 36 81.1 0 .C.......TG.T....A....-......G....... | ========== ====== ====== ====== ===================================== ======================================= ================== 11 37 96.1 36 GTCAGAAGGCACCCCGCGCCATAAGGTGCATTGAGAC # Left flank : GCTGGAGGGGCGTCGCTGGCGCTGTGGCGCTGACCTGCGTGGATGTGGTACAAAGGGGCTTGTGCCGGGGCGGTCTGGAGGGTGCCGACGGGTCGCCTGCGCTGCGCCTCGTATCGCTGCTGGTCACAGGGGGTGGTTCGAGGGGTGGG # Right flank : CTCGCAGGTTCGGATCCTGTCCCCGCTGCCGGGTTGTCATAATGTGCTCGCGCACAACTGCTTTCCGCTGGCAGTGTCGTTTTCTGCGGGGTGAGCCGTTCTTCGCTGGGCCAGCCGCATTCTGCCCGCTGAGATCGGCCTGCTTGGGCCAGCGGGATGCGGGTGACCCAGCGAGATGCGGAGAACCCCGCGGCATGACGGGCGCGCCCCCTGGGGTCGTCGCGGATCCCGGGTGGGGCCTGACTGGTGATTGGCGGGGAGTGGTGCGGATTGCAGAGTTGTCGGTGAATCGGCAGGGTGGTCGATAGGCCGGAGGGGTCCCAGGGGTGCGAAGCACTGACAAGCCCTGCGATTTGCTGCCAACCCCGGCGAACTGGGGCTGGCCTCCACCAAGAGCCACCGCTACGCCCTGGCCCGCAAGAGGAGCCTCGTCCTCGGCCGGGTGCTGGAAGACGCTCTGGCCAGGCATAACTGCGGCCTCGATGGTCAGGAAGATACTC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAGGCACCCCGCGCCATAAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.00,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //