Array 1 116445-122003 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUME01000003.1 Collinsella sp. WCA1-178-WT-3 (M1) seq3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 116445 36 100.0 29 .................................... ACCTTTCTCTTCTCGGGTTCCCTTATCGA 116510 36 100.0 30 .................................... TCAGTTGACGGGGCATGCCCGCTCGAAGCG 116576 36 100.0 30 .................................... GAAGCCGCTGACTGGAGATTCCCCCAGGCA 116642 36 100.0 29 .................................... CACTGATACCCCCACGTTTTTATTGCACA 116707 36 100.0 29 .................................... AACCGCATCGAAGTTTGCTCCGAGCTTAG 116772 36 100.0 29 .................................... CCCTGCTTGCCAGTGGCGCGGGCGTGGGC 116837 36 100.0 30 .................................... GCGTGTGCGGCCCTGTAATGGCCCTATAAG 116903 36 100.0 30 .................................... GCGCGTATAAGGCGTGGTTTTAGCTTGACC 116969 36 100.0 30 .................................... GGTCGATGAATTGCTTGAGCCAATGCCTCG 117035 36 100.0 29 .................................... AAACATCAGAATACGGGGAACACCTTCCC 117100 36 97.2 30 .....................G.............. TATCATTGATACAGATACAAAAACTGTTGT 117166 36 100.0 30 .................................... AGCTCGATAACGTCGGTAAGTATGTTCTCG 117232 36 100.0 30 .................................... GGAGGCCCTTCAGCGTCTCCGCGAGGCCCT 117298 36 100.0 29 .................................... ACCTTTCTCTTCTCGGGTTCCCTTATCGA 117363 36 100.0 30 .................................... TGGTGAGCTGTGTGGGCTTCAACTAAACAC 117429 36 100.0 29 .................................... GGCAATACTCGAAGAACTCGTCCCATTCC 117494 36 97.2 30 .........T.......................... CAAGTAATACGTCCATACCGGGAACCCGGT 117560 36 100.0 30 .................................... ACCTACCCTTATTACGTTTTGTAATAAGGG 117626 36 100.0 30 .................................... CGCTCGCGGTGAGCTTCGAGCGGCGGCGGT 117692 36 100.0 30 .................................... TACTTAGCAGCGCAGGTATCCTCATCATCG 117758 36 100.0 30 .................................... AGGACAGGGAGACGGCGCTTGCCGTGAGCA 117824 36 100.0 30 .................................... TCACTCGGATAATAATCTTGCATTAGTTCA 117890 36 100.0 30 .................................... TGCATACGGAAGCGGACCCCAGGTGACTTT 117956 36 100.0 30 .................................... TTGTAAATTGCGCTAGTAGCATTTGTGCGC 118022 36 100.0 30 .................................... ATTCATTCGTCAACTTTGGCCTGTCGGCAT 118088 36 100.0 29 .................................... CCGTTTGTGCAAATAACGATAGTGAACTT 118153 36 100.0 29 .................................... CGTAGGCCATGTAGTATCCGTAGGCAAAG 118218 36 100.0 31 .................................... GCGCAACAGCAAAAAGGCGGCAATTTAAAAT 118285 36 100.0 29 .................................... CGTGAAACATTGTAGTCGATATGCGGTTA 118350 36 100.0 30 .................................... GCACTTGTGGACGAGCTGGGATACAAGCTC 118416 36 100.0 30 .................................... CGGTGCCGATAAAGTTATCGTGCATCTCGT 118482 36 100.0 30 .................................... GTGTGGATACTTACTAGGGTAAGGTGCTTA 118548 36 100.0 30 .................................... ACCTACCCTTATTACGTTTTGTAATAAGGG 118614 36 100.0 30 .................................... AATCCACATCTCGACTTCCTCGTCATCACC 118680 36 100.0 30 .................................... TGGTATGCCCTCCTATAGCGTACCGTTGGC 118746 36 100.0 29 .................................... GACTTGGGGGGCTTGGTTTGGATGGACGG 118811 36 100.0 30 .................................... GACGTTCAATGGCTTTCTCTGGTAAAGCAC 118877 36 100.0 30 .................................... TGATTTGGTTTGCGATGCTGGACGACAACT 118943 36 100.0 29 .................................... ATGAACTGAAGGGGAGAGGGTTCAATTGC 119008 36 100.0 30 .................................... TAAAGTTCGTGACAATGACCTTAGTCAAGG 119074 36 100.0 31 .................................... CGTTCGATTCAACCAAAACAAGAAGGCGGTA 119141 36 100.0 30 .................................... GGTTTGTCACGCTCATTATTGTTTTCTCCT 119207 36 100.0 30 .................................... AGAACCTGCCGCGCATGTCGTTGCGGGCGT 119273 36 100.0 29 .................................... TTCCCTGAGGACGAGGACGAGGACGAAGA 119338 36 100.0 29 .................................... ATAAGTTTGCAGCCGATACGTTCACTATC 119403 36 100.0 30 .................................... CGTTTGCGAATGGCTACAGTCTAACCGTTC 119469 36 100.0 30 .................................... CGTGGCCCGTGCCCGGCGTTTTGTGTAGCA 119535 36 100.0 29 .................................... GAATCTCTTCAACATCAGAATAGTCAGCA 119600 36 100.0 30 .................................... ACCCTCGCGGGTATAGTTGTAGGCATATGC 119666 36 100.0 28 .................................... GAAAACCTGAAAAACCCTGTCGCGCCGC 119730 36 100.0 29 .................................... ATACATATGACCATCTGATTGATATTGCA 119795 36 100.0 30 .................................... TTAGTACCACAGGCAATAGAGTTGTAGTAA 119861 36 100.0 30 .................................... CGTAGACAACCGACAATCTTTCCGTACACA 119927 36 100.0 31 .................................... AAGTTGTTAACGTTTAGTATTTTATTACACT 119994 36 100.0 30 .................................... AGACAACTGTCTCAGTTGTTTGGATACGAG 120060 36 100.0 30 .................................... AGACAACTGTCTCAGTTGTTTGGATACGAG 120126 36 100.0 30 .................................... CAAACAATGTACCAGAGGTTGATTTTCACG 120192 36 100.0 30 .................................... GGCCACCGTGTCGGTATAGCGGTTGCACGC 120258 36 100.0 29 .................................... AGCACTGCATCCTGCGCTTGGGACAGCTC 120323 36 100.0 30 .................................... GGGCGTGCCTGGTACACGGCGCACTCCTTG 120389 36 100.0 30 .................................... TGGCGTGCTTGTCGGATTCACTGAAACCGC 120455 36 100.0 30 .................................... ACGCTCACGGCCGTTAGGGATGGTTCTATC 120521 36 100.0 30 .................................... TCCTTGCGAATGTTCTCCATTGCCTTGCGG 120587 36 100.0 29 .................................... TCTGCCTTGGCTATATAGTAAAACAGTTG 120652 36 100.0 30 .................................... CCCCTCCTGTCTGTCTAGAACCTCATATAG 120718 36 100.0 31 .................................... CAAGCGCCTTATGGGTCAGGTAGTGGAGTGC 120785 36 100.0 30 .................................... TTTCCATGTTGAAGAACAGCCCGCAAGATA 120851 36 100.0 30 .................................... GAGCTGCTTGTTCAGCTGCCGAATCTCCGC 120917 36 100.0 30 .................................... AGTAAAGTAAAGCCCAAGAGAAGGGATATA 120983 36 100.0 29 .................................... ATGCGAACGAGACGAACGAGAGACTCGTT 121048 36 100.0 30 .................................... CATAGAGCTGTTCTAGATAGACAGAAGAGG 121114 36 100.0 30 .................................... GGAATCGTCCTCAAGCTCCACTCCCATTAC 121180 36 100.0 30 .................................... ACGAGCGGGAGCATTGGCCGCGTCGTCAGG 121246 36 100.0 29 .................................... ACTTAGTCTGCGGCGTGCAGCAGTAGTGC 121311 36 100.0 29 .................................... CCGAGGAATACGTAAAGGAGAACAAGAAA 121376 36 100.0 30 .................................... CGCTGCCGTGTTGGTCACATAAGAGCGATT 121442 36 100.0 30 .................................... AGCTTCGGATTTAATCGTATACGGAAGCTG 121508 36 100.0 30 .................................... TCTCAATGACGGTTTTCACGGCATTAAAAA 121574 36 100.0 30 .................................... TACAGCATAACTACAAGCTTGTGACAAAAG 121640 36 100.0 29 .................................... GTGGTCGCCGGCCCTGTCGGCGTCGTTGA 121705 36 100.0 30 .................................... TAACACCTATCGCGGCGCTAGCAGAGGCGC 121771 36 100.0 29 .................................... CAGTAGCCATGCTTCCTCCATTAGCCACG 121836 36 100.0 30 .................................... CAAATAGTAGCAAACAACCGTAAAACAAAG 121902 36 100.0 30 .................................... ATCTCTTCCATGCTTCACCTCCTAGAGCCG 121968 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 85 36 99.9 30 GTTTGATTACCAGTTAGATCGACACTGCTCCAAAAC # Left flank : CGCTCCTGCCCGGTCGACACCGGCCGCCTGCGCAACAGCATCACGCACGTCACGCTGCCGGACGAGAAGGCCGTGTACATCGGCACGAACGTCGAGTACGCGCCATATGTCGAACTGGGAACGAGGCACCAGAAGCCGCAGCCCTACCTCAAGCCGGCGGCAAAGGACCACGCATCGACATACCGCGCCATCATGCAGAAGCATCTCGGGGGCTAGGGCCGCGTTACGCGCGCCTGACGATGTCGCCGCGGCGACGGACTGCCGCACGGGGAGGCCGCGACGAAATGCTGGCGCCCCCGGTTCATCCGAGGAAAAGGAGAAAGCGTGGCACTGACGCGAAAGATGCTCAAGGCAATGGGCATCGAGGACGAGAAGATCGACCAGATCATCGAGGAGCATGCCGAGAGTGCGAACGCGCTCACGACGCAGAGTGACGAGTTCAAGGAGGCTGCGGGCAAGGCGGACGACCACAAGAAGTAGTTGGACGCATTCAAGGCCAA # Right flank : CCATTGGAGCAAATTCCCTACTGCGACGGGACGTTCAATCTAACCGGTCGGTTCTTTCAATGCTCTAAAAACTGCAGGTCAACCGTTAGTTTATGTTCATGTCCGTAAGACATGGTATCTTTTTTATTCTCCAGGAGCAACAGACTCAACTTAAGGAAAAACACGTGGTCATAGAGCGTTTGCAGCTCATTTTCCGTCAAAAAAGTTTTGAGATTTACAAATACGATTGTCTTTCTACAGCCAGCGTCAAGAGCAAATGAAAGGAAATTCAGCAGATTATCAAGGAACGATTTATCTTCTTGAGGCGCTGCGCCAAATCCTAAAAACTTGAGGTAGCGCTTCAAATCCCATTCTAACCCAAACCCCAAATCGGCATTAAAGCCAAGGTTCAATCCGCCTAAACGCAGCTTTATTGCACGCTCGGCCTCTTCCACCTGCATACGCAGATCTTCGTCTTCTAGAAACTCGCGCTCAACCTTCTTGGTGATTGCGGTCATAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGATTACCAGTTAGATCGACACTGCTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], //