Array 1 3828-1930 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHEG010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-10 NODE_1_length_311768_cov_4.914886, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 3827 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 3766 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 3705 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 3644 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 3582 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 3521 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 3460 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 3399 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 3338 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 3277 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 3216 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 3155 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 3094 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 3033 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 2972 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 2911 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 2850 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 2789 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 2728 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 2667 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 2609 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 2548 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 2487 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 2426 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 2365 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 2304 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 2243 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 2182 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 2081 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 2020 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1959 29 93.1 0 A...........T................ | A [1932] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 21726-20110 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHEG010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-10 NODE_1_length_311768_cov_4.914886, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21725 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 21663 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 21602 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 21541 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 21480 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 21419 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 21358 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 21297 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 21236 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 21175 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 21114 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 21053 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 20992 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 20931 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 20870 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 20809 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 20748 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 20687 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 20625 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 20564 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 20503 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 20442 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 20381 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 20320 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 20259 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 20198 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 20137 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //