Array 1 232102-231932 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXQY010000001.1 Prevotella salivae strain SCHI0034.S.8 Contig_1_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ============================ ================== 232101 38 100.0 28 ...................................... ATATTCATTAAAATATTGGCATAAAACC 232035 38 94.7 28 ..T...A............................... TCATTCCTGGAAACGCCGACATAATATT 231969 38 97.4 0 .................G.................... | ========== ====== ====== ====== ====================================== ============================ ================== 3 38 97.4 28 TACGGCGTTGCGTGGTTATAACATTCGTCATGGTGGAT # Left flank : GCCGTAGGTGTTGCGCTTTTTTTGATTTCATCTCTTTTAATAGGGAAAGCGGCGCAAAGGATGTTTGCAAATTGACGAACCCCATAGGGATTCTGCTTTTGATAGCCCAGGGTTGCCAAACGATAGTGCAGGCTACCCTGGGTTAGGGTATGGTTTGTGGAGAACAACGCCATCGGTGTTGCGCTTTTTTAATTTCATCTCTTTCAATAGGGAAAGCGGCGCATAGGATGTTTGCAAATTGACGAACCCCATCGGGGTTCTGCTTTTGGTAGCCCAGGGTTGCCAAACGATAGTGCAGGCTACCCTGGGTTAATACGTAGCGTGGGGGGACAACGCCATCGGTGTTGCGCTTTTTTTGATTAATCCGCCATGAATCCCCCTCGCTATACCCATGTTTACTCGGAAAAAGCTCAACACTTACAGCGTTGAATCTCCTTGCGAATGCTTACCCAGGGTAGGCTCGTTCCTCGCCAACCCTGGGCTATCAAAAGAACAACACC # Right flank : TCATTCCTGTTTTTTAATTTCATCTGCTGTAATTCTGAACACAAATTACGAATTTCTTTCGTCAATAAATCGTAATTTATTCGATTTTAAGGCTTCAGTCGACTTGGTTATCAAAAAAAAGTAGTAAATTAGCACCCTTGAAAAAAGGTAGAAAATCGCTTAGAACGAAAATAAACGGCCTTTGAGGCGTTTTTTGTTTTACTTTCGTTTTATAGCAAACAGCTAATAATAACGATCAATTACATCAATGGACGAAAATCAAACAATTGACAATGACAGGATTTTAAGAATCAACATTGAGGAAGAAATGAAGTCCTCTTACATCGATTATTCGATGTCAGTTATCGTGGCTCGTGCGCTTCCAGATGTTAGAGATGGTTTTAAGCCTGTGCATCGTCGTATTCTTTATGGTATGCTGGGAATCGGTAATACCAGTGATAAACCTTATAAGAAGTGTGCACGCGTTGTAGGTGAGGTGTTAGGTAAATACCATCCTCACG # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACGGCGTTGCGTGGTTATAACATTCGTCATGGTGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.63%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 9704-10258 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXQY010000005.1 Prevotella salivae strain SCHI0034.S.8 Contig_5_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 9704 29 100.0 36 ............................. CAGAAAAAAGGCGTATGTCAAAGCAATTTGCACTCG 9769 29 100.0 35 ............................. TCGTGTGGGAAGTTAGACGGCAAGGTGGTATATGT 9833 29 96.6 38 .G........................... TATTATACAACACATATTAGGGCATCAGAGTATCAAGA 9900 29 96.6 36 ................T............ CGCTATCGGCTATAAGTCGTTTAGTGACGAAAAAGT 9965 29 100.0 38 ............................. TTAGATTGACTGATAAACAGAGTTAGGAGAGAAGTTCT 10032 29 100.0 39 ............................. TTCGGGTATGTTTTCAGACAATGCAGGTACGGACGTAGG 10100 29 96.6 36 .................T........... TCGCTTTGAAATAGCTTCAATCTTCGCACGCTCTCT 10165 29 89.7 37 ........C.....A..........A... CCATGAACACACAAACGAGTAAGTGCACCGCAATACG 10231 28 75.9 0 A.......C........T.AT.C..-... | ========== ====== ====== ====== ============================= ======================================= ================== 9 29 95.0 37 GTTATAATTGAACCTTAGTGGAATTGAAA # Left flank : TTTAAGATGTATTGGTAATTATTATGTATGTTATTTTGATTTATGATGTGGCAGAGAAGCGAGTTGGTAAAATGCTGAAATTGTGTCGACAATATCTTTGTTGGATACAGAATTCGGTGTTTGAAGGTGAACTATCAGAAGTTAAACTTCGAGAGTTACAGAATAAAATACATAGCTTAATAGATAAAAAAGAAGATAGTGTGATAATATTCTCCAATAAAATGAGTTATCACATGAGTAAGGATATTCTTGGTAGGGAGAGAATGACAACAGATAACTTTCTATAAAGTTGTCGATGTGTAGGAATAGCTGTTCTTTCCATTTTTCTATGGATACTCAAATTGCTCTTTGACTTCTTGAAACACCTTTGTATAAAAGGGAATGTCGATGTTCCGCGAAAAATATATCATTGGACATCGACATTTTCTCAATGATTTTTATTATCTTTGTATTGCTGAAAACATTAGTGTTTATCAGCCCCGTTCTTTTTGAAGAAGTGG # Right flank : ACTATCTTCATACTTAACTATAATTGCAGCATGAGTAAGAAAAAGGATGGCGAAAATGATTGGGCATAAAGTCTTCATACTTAACTATAATTGCAGCATGAGTGTATTTATGTTGCACCTTCTTTTAGAAGGTTTTTCTGCGCGCCCTGCCTTTTTTCCCAATTACTTTTACATAGAAAAAAGTGGTAGTTCCTATGGTTTAATAAAGAAAGAAGAAATTAGCGTGTCGGCTGTTTACGATATACCGAGCAATGTTCCTATGGTTTATTAATGGAAAAGGAGAGGATATAACGACTTTATTATTTTGAAAGGATGTTGAGAGAAGAGTTATTTTACGCAATTTTTAGTTCTCAATTACAGACTAATTTCATAGGAAAAGGCGAGTAATTCGCATCAAGTGATTAGCTGTTATACATCCCCCTGATTAACAGTCAGGGGCACGTTCTGTTGATAAATATGAATCATGAGTCACTCATTCTCAACCACCTGTTGAATCGTTG # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAATTGAACCTTAGTGGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //