Array 1 48599-47492 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACARA010000049.1 Pseudomonas gingeri strain IPO3776 IPO_3776_S45_L003_contig_49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48598 28 100.0 32 ............................ TTGCATTTTTTGCGCGTCTTGAAAGCCTTTCT 48538 28 100.0 32 ............................ AGAGATATCGGAAAGCATCATGCACATGTTTG 48478 28 100.0 32 ............................ AGCGAGCCGATTGGGCGCATGAATACCAGCGT 48418 28 100.0 32 ............................ TGCTGCAGCCTGTTGCGCGCGCAGACGCCAGA 48358 28 100.0 32 ............................ ATGCGGTACACGATATAACGCTGATTGTAGTC 48298 28 100.0 32 ............................ TACCTGCGCACGGATGAGTACATCGACACCTT 48238 28 100.0 32 ............................ TTGCGCCAGTCTCGGGCGCCGCATAGGCATTT 48178 28 100.0 32 ............................ ATGTTAGCGAACAAGGCTGAGTGCGAGGCAGC 48118 28 100.0 32 ............................ ATCAACGTGGCTGTGTTGACGACTGGCGTGAA 48058 28 100.0 32 ............................ GTTGAGCGGCCACAGCTATCGCTCTAAGGTTG 47998 28 100.0 32 ............................ TGGGGGTCTCCGTCGATGAGTAGCGTTGGCCC 47938 28 100.0 32 ............................ AGGAAGCGCCGGTGAAGATACTGACAGGCCCT 47878 28 100.0 32 ............................ TTGATGCAGCTGCAATGACAGATTTGCTCGAG 47818 28 100.0 32 ............................ AACTACGCGTATCCATCTCTCCACCGTTCACC 47758 28 100.0 32 ............................ AGCCCCCAAGGTCGCTCTGGCCTGGCACAGAG 47698 28 100.0 32 ............................ AGAACCGGCGGGCTGCTCATACTGCCAGCGAC 47638 28 100.0 32 ............................ TGACCGCAGCGGATGAGCGGGCGGATGTGTTG 47578 28 100.0 32 ............................ CTCCCCCTTCAAAGTCAGCCGCTATAGCGGCA 47518 27 92.9 0 ......................-....C | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.6 32 GCTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCAGTTGCTGGCGCTGAACTGGCTGACCGGTATGCGGGACCATGTGCAACTCAGTGAGGTGACGATTGTGCCGGTGCAGGTACGTTACCGGCAGGTCAGTCGCGTGCAGGTGGACAGCAACCCGGAGCGCTTGCGCCGGCGCCTGATCAAGCGCCATGGCATCAGTGAGCAAGAGGCCCGCGAGCGCATTCCGGACAGCGCCGCCAAGCGCTGCAACTTGCCCTTCGTCAACCTTCGTAGCAACGGTACCGGACAGGCATTTGTGCTGTTCATTCGCCACGGGTCCATTGTGGACACCGCCCAGGCGGGCACCTTCAACGGCTACGGTCTGAGCAGCACCGCCACCATCCCCTGGTTCTGATCTTCTGGACCCTCTTTTTTGAGTGAGGCAGGCACCTTCGTAAAATCAAGGACTTACGAAGGTGCCAAAAAAGAGGGGTAAAGACCCATTTCTCGAGTATTTACCTTTGCAGACAGGGCTTTACCGGGAAAGTCGTCTA # Right flank : GCACTCATGTAGAGGCGAGCCGGGAAATCTGTCGCAATACTCTGCGCGAGGTGACGTCAGGAGTTGCTCGGCGCAGGTCGATTTCATGGCCACCGTCATGCCCTGATCGTTACTCCCCTTGGTAACGACCTTCTCTGTGGTTTATGGAGAGAATGAGATTGAGTGTGATGGCGCTCAGTACAGACCACATCACCCGGCTGGGTTCGATAAATAAAAGCGCGCAAAGCACGATTGAGCTGTCTGCCAACATCTGGATGTTTCCGGCACGCCAGCCGAATTTGTTTTGCAGATAGAGAACGGCGATGCCAATGCCACCAAGACTGGTGCGGTGGCGAAACAATACCAATGTACCGATTCCCAAAAGAATCCCGCCGTTGATACTGGCGTGCGCCGGGTGTACCCAGCCGATAGTGACCGTCATGGGGATCAGGGTTGTCATGAGTGAAAGCAGGGTGACCGCGCTGAATGTTTTCAGCGTAAACGCAATGCCCATGCGCTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 58145-57457 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACARA010000049.1 Pseudomonas gingeri strain IPO3776 IPO_3776_S45_L003_contig_49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 58144 28 100.0 32 ............................ AATATCCCAGTCGTCACCAATGCAAAAGGCGT 58084 28 100.0 32 ............................ AGGCACACCTACGCAACAATGTGCCTCATGTC 58024 28 100.0 32 ............................ AGCGATGTCGCTAGACGTCACGGGACCGAGTT 57964 28 100.0 32 ............................ ACCAGCCAGATTCAGCGCCGCCTGCAGGCCGA 57904 28 100.0 32 ............................ AAAATAGATGCCTTGCGCTTGGTGGGCGCGCT 57844 28 100.0 32 ............................ AGGGACAGATCAATGCGAAGCTGGGTCTTGGC 57784 28 100.0 32 ............................ CCGACGACTCTTACGGTCATCGCAGCCCAGCC 57724 28 100.0 32 ............................ TTCCATACCGTTACCGGCGTATCGATATCGAG 57664 28 100.0 32 ............................ AATCAATAAACATGGGAAGTTCCGTCAATACC 57604 28 100.0 32 ............................ TGCTGCTCCCGCGATACTGGTCGCAGTTCCGG 57544 28 100.0 32 ............................ GATTATGAGTCGGACGCTCTAACCATCTGAGC 57484 28 85.7 0 .C.........CAT.............. | ========== ====== ====== ====== ============================ ================================ ================== 12 28 98.8 32 GTTCACTGCCGTGCAGGCAGCTCAGAAA # Left flank : GTCATGACAGGGATGAAAAAACTGCTGGCGTTGGGCAGGCCATTGTTGGGGGCATTAGTGTCAGGCATAGGCGTCCCTTTCGTGTGAGAGCCCCCAGGTGCCCATGTCGCGCAGACCCATCCAAGGCTTATACGCTGAGTATTGCTGCAGGATGACGAGGGCGATTGCTATCAGCGTGAAACAGTAGCAGCAATTGGAAAGCCCACAAGCATTGGCTCCATGAGCGCTGACTACCTCGCTCAATGTGCTGCAACATCTGAGCTGACTGTTGAGGCGCATCGATGCCCGTGTTGCGCCGCAGATGTTGTCTCGGCCAATCTCGTGAATGGGCTTGCTCTCAAGGTCGGTTGTCGATAAGCCCGCGAGCAGACCCTCTTTTTTCAAGATGAAATACCACCTTTAGAAATCAAAGACTTACAGGAGAGTGAAAAAATAGGGGTAAAGTTGGTGTTGCAGATCATTTGTCTTTTCGAACAATACGTTATCTTCGGATTGCTCTA # Right flank : AAAGGCGGATTGCTGTTCACCGAGGTGGCGCGCGTACCGCCGCATAAGCGGCGCAGAAATATAAGGACATATTAGAGAATTCTCTATAGCGAGCGCGCTGTCGCATAGGCAGCATGACGGCGTGGCTTGGCTTAACACCTGCAGACCGGTGGTTCGGCAGTACGAACGGTTGCCGAAAAGCCAAGTCTGGCAGCATGTGGTTGTACCTGTGGCTGTTGGCACATTGCCATCCTTTCAGTTATAACCCTGCTCAACGATTAAACTGATGTAATCGGCTGCTCGCTCATGGAAGAAATCCGCTCCTCCGATCTCAAGACGATCCTGCATTCCAAACGCGCCAATATCTACTACCTGCAGCACTGCCGGGTGTTGGTCAATGGCGGTCGGGTCGAGTATGTGACCGACGCCGGCAAGCAATCGCTCTACTGGAACATCCCCATTGCCAACACCACGACCGTATTGCTGGGGACCGGAACCTCGGTGACCCAGGCGGCGATGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 61014-59725 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACARA010000049.1 Pseudomonas gingeri strain IPO3776 IPO_3776_S45_L003_contig_49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 61013 28 100.0 32 ............................ ATCAGGGAACAGCGAAGAAAATGCTGATTGCT 60953 28 100.0 32 ............................ ATCATGATCGACCCTGAAAACGGCCACTTCGG 60893 28 100.0 32 ............................ TCCCCCCCAGTCGCAAACCTCGGTAACCGCCG 60833 28 100.0 32 ............................ ATTCGCAACATAATCAACAGTTCAGATACCCG 60773 28 100.0 32 ............................ TGCATAAGGCGGGCTTCTTTGACGTGATGCTT 60713 28 100.0 32 ............................ ACAAAGAAAAGACGCCAAGCTTCGGCGTAGTC 60653 28 100.0 32 ............................ TGGCACCGGCGACGAATACGTAGGAGAGCTGA 60593 28 100.0 32 ............................ TCCAGTTGCAACCACTCAAGACGCGAAACTTC 60533 28 100.0 32 ............................ TTCAGTGCACGGATCGCAATCGCGGATTTCAT 60473 28 100.0 32 ............................ ACCCTTGCCCATCGCCTTGAATGGCTTGCGAT 60413 28 100.0 32 ............................ TGATGCAGCCGAAGGATTCGCCCAAAACTTTT 60353 28 100.0 32 ............................ TGTATGTCCGCGGCATGGTACTGGTCGAGCAG 60293 28 100.0 32 ............................ TGAAAGGATCCCTGATTGTCCCGCTGATCAAC 60233 28 100.0 32 ............................ TTCAACGTTTGCAAAGTACGAACGCGGAGAAA 60173 28 100.0 32 ............................ ACAGCCATTTGAAGACCTTGTGCCCGTTGTCT 60113 28 100.0 33 ............................ ATGGTGGTCAGGCTGCCACCACAGATCCCCCAT 60052 28 100.0 32 ............................ GCACATGTGCACCTGCTGGGTCTTTGTGAACG 59992 28 96.4 32 ............A............... TTGACCGTCGGAACACCGGCCTCGATGTGAGC 59932 28 96.4 32 ............A............... TGTCGCGCCTGGCGGGCTGGAAAAAGGTTGTG 59872 28 96.4 32 ............A............... TTCAGGCCGTCGAACGACTTGAACAGCTCGGC 59812 28 96.4 32 ............A............... GTACAGCAGCGGTACCGGGTTACCCTGGACGC 59752 28 96.4 0 ............A............... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.2 32 GCTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TCAGGTCGCCCCTGATTCAAAAAAGGAACAGTACCTTTTCTGAATCACCTTTGGACATGTCCGAAATATGAAAATGTGAGTGACCTCAGAATCGTCACGCGCCTAGGGCTTCCATCGGATCCCGACCGAAGGCCGTGGCGACGTACATGTGATCTGTTCGCGGCCTCTCAACCGGCAGAGGAAACGAAGGTAATGACCGTGCTGGCGATGGGGCAGAGGAACACTGCGGGCCGCCAGCGTCTCGCAAAATCCCGAGTGGGGCATGTGCGCCGGGAGATGATGAGCCGCAGCTTCACCACGCGGCTGGATCAGCTTTGGCGGGTGTCTTGTTGCTGAGCCCAGAGGAGGCGTCACGAAGTGTCATGGCTGACCCTCTTTTTTGGGTGAGATCCCGCCGCTAATAAAATCAATCACTTACGGAACGGCAAAAAAAGAGGGGTAAACTGGCAATTATTGGGGATTTGCCTTTGCAGGCAGAGCCTTATCACCGAAAGTGTCTA # Right flank : CAGAACTAGAACCACACACCGGCGGCTAGGCCGTTCGCTGCCGTATAGGTGTTTATTGAGCGGGCCTAGTCAGTAGATGGAAGCCCGAAGCACATAGGTAACCTGATGTGGACGCTGTTCGCCCATTACTCCCAGTTGAGCGATGGAAGGCCGAAGTCGTACCAGATGGACCACAGGATAACCAGCAGACCGGCAAGCACCTCGCGGCGGCGATATAACACCAGGTAGCGCAATACCACGCTCAGGTCGGAACGACTCAATGCACGTAGGCTTTGCCCGTGGGACATCAGGCGCAACGCATCCTCAGGTGTGTCGTGGTGGCGGCGGGAGTCATAGCCATATCGACGATAGGCCCCTGATGAGCCGGTGTACCCCAGTAGGATTTCACCCTCTAGATGGATCAGGCGTGGCCTCAGGTTCAGGGACTCCATCAGGTCCGTAGCGCTGCTGACGATGGAGCTCACTCGGTCTTCGCCAAGGATGCTGATCGCATCGCCAGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : GCTCACTGCCGTATAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //