Array 1 138-1860 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIQD010000031.1 Anaerostipes hadrus strain MSK.14.9 NODE_31_length_39213_cov_183.218, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 138 30 100.0 33 .............................. TCCACCACCTTTCTGTAGATTGCCACGTTTCTG 201 30 100.0 35 .............................. CACAGACTCAAAAGTGTGTCCTGTTTGATTTTTGA 266 30 100.0 35 .............................. ATAATTACTTTCTTAACTGCATCTTTGAACTCTTT 331 30 100.0 34 .............................. GAAGAAGTTGTAATGAAAGTATACAACCATATCA 395 30 100.0 35 .............................. ACTATTCAATGCCCAGAACAGTACATGACATCTGA 460 30 100.0 34 .............................. AACGCTATTCCACTAACAATTGAAGATGGTTATT 524 30 100.0 36 .............................. TATGAATTATTGCGTAGTGCAATGACGAATGGTGTT 590 30 100.0 35 .............................. AGATAGGAGTATTGTTTTCAAACGCTGGTTTATCT 655 30 100.0 34 .............................. CTGATAAAGACATTATTCCTGACCTGACGAAGAT 719 30 100.0 34 .............................. ATATGTTCTACAAGTTCTTCGAAATATGGTACAT 783 30 100.0 36 .............................. ATAATTCCTGGAACTTCTGCCAACTGTTCTCCATCC 849 30 100.0 35 .............................. TTGTCTTTGAATTTTTGTGCTGATGTTGGAGTGTA 914 30 100.0 35 .............................. TGTAAATATCTTATCTTATTCCTTATTGGAGCATT 979 30 100.0 35 .............................. GAGGTAATCCAACTTCGTTATAGTAAGAATCCTCA 1044 30 100.0 35 .............................. AAATGAAAAGCTGTAATGAGATTAATACCATTTAT 1109 30 100.0 36 .............................. GTGTGATGATGCAGACGTATATGTAGTTGATGTTCC 1175 30 100.0 35 .............................. CAAAATCAAGGGACAAACAACACTAAATATGAGCT 1240 30 100.0 36 .............................. TTCTTTCATATAAATTTTTATAAAACTGTTTTGTAA 1306 30 100.0 36 .............................. GAGCCTGGGCAGATGATCATGGTTATTATGTGCCTG 1372 30 100.0 35 .............................. ACAGTAACGGTGGTTCTGTAGCGGAAGGTGTTACA 1437 30 100.0 36 .............................. AGACTGATTCTTCTAATCGGTCTGTATGGTGTAAAC 1503 30 100.0 36 .............................. AGACTGATTCTTCTAATCGGTCTGTATGGTGTAAAC 1569 30 100.0 36 .............................. GGTTACTTTTTACAGCCTAAAGTTTATTTTGAAAGA 1635 30 100.0 35 .............................. AAAATCGACCAAGCTAATGTCCTGCAAAAATCTCC 1700 30 100.0 35 .............................. ACGAGTGATATTGGTCGACAGATAATGGAATCATT 1765 30 100.0 36 .............................. AAATACACTCCATTTTCGCCACTTTTTTTCTGATAA 1831 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 27 30 100.0 35 GTTAAACAATAACATGAGATGTTTTGAAAT # Left flank : AAAGCTGATAAATCCAAGCTTTCTTGTGCAATTTTAATAAAAATATACAGAGAGGGTGCACTTGGGAAAAACAATGGAAAGCACATAAAATCGTTGTTTTTTTAAAAAGACAATTAAAAAATGACGTAAAATCGTTGG # Right flank : TGAAATTAGATGATGCCTGTTGCACTGATACAGCATTAGTTAAACAATAACATAAATTTATAAGCACATTTGATTAATTTCTAATTTTAAGGAGGAGTCTATGAGAGTTAATGGAACATTAATCAATTATTATTTCCATTGTAAAAGACAGTGTTATTTACATGGAAATAGGTTGAATCTTGAAGATAATAGTGAAATCGTACAAATTGGAAAGGCAATTCATGAAGAACGATTACAAAGTTCGAACAGTGAAATAGCAATTGAAAATATTAAATTAGATAAATTAACAAAAGAGTATTTAACAGAGGTAAAAAAATCAGATGCTGATGTAGAAGCAGCAAAATGGCAATTATTATATTACCTAAGTGTTTTAAAAAATAAAGGAATTTATCGAAAAGGGAAACTAGAATTTGTTGAAAAAAACAAATCTAATAAAAAAGTAGTAATTTTGGAATTAACAGAGAAGAGGGAAAATGAATTAAAGAAAATTATTGAATCAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACAATAACATGAGATGTTTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 8396-7970 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIQD010000045.1 Anaerostipes hadrus strain MSK.14.9 NODE_45_length_17101_cov_246.418, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 8395 32 100.0 34 ................................ AATACCTGCTCGTCTCACGATTATAGAATCACTG 8329 32 100.0 33 ................................ TGAATATCATAATGCTTAAGATATTCCTTTAAT 8264 32 100.0 34 ................................ ATGTTACTATAATAGCACTTTGAATTGTATGTGA 8198 32 100.0 34 ................................ CGACAACGGATTGAAGATCATTATGATGATCTTT 8132 32 100.0 33 ................................ TACACAACAGTATTAAATAAATTTCCAAACTCT 8067 32 100.0 34 ................................ AATTTTAAGACATAATCCGACCAATTCCCTACTT 8001 32 71.9 0 ....A........CAA..A..CA....C..T. | ========== ====== ====== ====== ================================ ================================== ================== 7 32 96.0 34 GTCGCTCCCTTCGTGGGAGTGTGGATTGAAAT # Left flank : ATCCAGCATTTTTGTGGAAATGAGGTGATAAAATCAAATGTTAGTATTAATTACCTATGATGTAAATACAGAAACAGCAGCAGGGAAAAAGAGACTGAGAAAAGTGGCAAAGCAATGTGAAAATTATGGAAGGCGAGTACAAAATTCTGTATTTGAATGCATTGTTGATAATGCACAGTGTGTGATGCTAAAAGCACTCTTAAATGATATCATAGATGAAAATGTGGATAGCTTGCGTTTATATTATTTAGGGAATAAATATCAGACTAAAGTAGAACATTTTGGTGTAGATAGAGGAATACAAGTTGATCAACCATTGATTTTATAGTGATGCGAGGATATAGCAAACATAAAAAGAGTGGGAGATTCGCACTTAAAATATGAAGTAAAAAATAAATTTGTATCTAAAAATAAATAGTATTTGAATGATTTGTAGATATAAGATAAAATTTATTAGTGATATTGAACAAAAAATTAGAAAATTATTGGTTAATATTGCT # Right flank : ATATTTTACTTGGTGTGGGTTATATTAATATTTATAAATTGTCATCAATATTGTAGTAACGATAAGCGGATATACATACAATGGAAGCACAAGAAAGGAAGAAATCAATGAAACGATGTAAAATTACCGCAGTACGGAAAACAGAATATAAAGATCTAATGGAAAAGTATGAAAATCCAATCCAGCATGCCTGCGATATAGAAGAAGGACAAGTATTTATCACAGAAGGATGGAAACGACCAGAAGGATTTTGTGAAAGTGCATGGGAGAGTATTTCACCATTTGTTATGACATTAGCATATGGAGGCAGTGATATTTATGAAGGCTGGATGAAAAACAAAAACTCAGCGATGATCAGTTGCAATGACGGGTTTAGACCGGTAAGTTTTTACATTGAAGTGTTAGACGATAAAATATATTGATGAGGAAATATGACAGCGCTGGTTTATTCGGAACATCCATATTACGACAGGAAAGAGATCAGCATTGAAGATCTAAAA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //