Array 1 105802-108138 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQU010000002.1 Listeria booriae strain FSL L7-1594 NODE_2_length_339584_cov_34.851871, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 105802 30 100.0 35 .............................. TTAGGATTTTCAGCGTTTGAACTTGACCCTATTCA 105867 30 100.0 35 .............................. TGCCGCCCCTCCTTGCTCAAGGGGCTAGAAAGCCC 105932 30 100.0 37 .............................. TTTGTTGTCGCTTAATACCAAATGAAAAGGGGTGATT 105999 30 100.0 36 .............................. CTAGGTACCCAGCATCAATTAACTGGATGAGAGAGT 106065 30 100.0 37 .............................. TTTTCATAATTCAAGTACAACTCGGCGACGATTGTCC 106132 30 100.0 36 .............................. AAGCTCTATATTGGTTGATCGTCCTTGCATTCTTCG 106198 30 100.0 37 .............................. CGGCACACATACGCATCTATTCTATTCGCGGAGGGCA 106265 30 100.0 34 .............................. ACTTCATCTGTGCAATCAAAAACATCGTTTTTTT 106329 30 100.0 35 .............................. ACAGGAGAGAGTTAATATGGAGACTCTCACAAGTA 106394 30 100.0 36 .............................. CTATGATGCCACGCGTTTGTTTATAACGCAACTGGA 106460 30 100.0 37 .............................. GAAGTTGGTTTTTCTAACAAAATAACAGACATGATAG 106527 30 100.0 38 .............................. GCGGAGACTTTGAAAGACACGTTAGATGCGATAACAGA 106595 30 100.0 34 .............................. TTAATATAATACTCTTTTTCATTCTGCTCACTCC 106659 30 100.0 35 .............................. AAGGTTGTCCCTGTTTCTCCAGCAAAGATAGCAGT 106724 30 100.0 36 .............................. GAAGCGTGGAGATGTATACTACGCGGACTTATCTCC 106790 30 100.0 37 .............................. ATCAAAATCTGCTGGCGTAATAGCCAATGCCTCGGCA 106857 30 100.0 37 .............................. GATTTTAAATAGACTGTTATGCGCGATTTGTTCATCC 106924 30 100.0 36 .............................. AGTCGTGAACGCTCGTATGATTTGCGGACGTTCTTT 106990 30 100.0 36 .............................. ATTATCTATATCAGTTTGTGTAATACTAGGTGTATT 107056 30 100.0 37 .............................. AAGGTTTAGGCTTTCCAGTTGTATTAGCAAAGGTTGA 107123 30 100.0 36 .............................. GCTTTAAATTATGATTTGCGAAATTCAGCTGTTGTA 107189 30 100.0 36 .............................. TTTACTCCGCTTGTATTTCTGGTAGATACGTTTCTA 107255 30 100.0 36 .............................. ACTAACGAAGGATAACTATTACTCGTCAGAAATGAA 107321 30 100.0 35 .............................. AAACTTCTTTTTCTGCATCTACATTACCGTTTAAG 107386 30 100.0 36 .............................. TCCGTTGTTAACCCGTAGAGTTTTCGAGCTGTGGCT 107452 30 100.0 37 .............................. TAAAGTTTTGATAGCCAACATATTTAGCAACGCCATC 107519 30 100.0 34 .............................. GCAAAATGGATGGGCGCATTATTGATTCTTATTA 107583 30 100.0 35 .............................. TTCTTCGTAGGGTATATCTATCATAATGTCTATAT 107648 30 100.0 36 .............................. CTAGCAACGCTCCTTACGGTTTTAAAGTTACTATTT 107714 30 100.0 35 .............................. GACGATGCTTCAACAGTCTAAATTTATGTATCAAG 107779 30 100.0 36 .............................. ACATGCTTTATGTTCACATCACTTAAAAATAATGCA 107845 30 100.0 36 .............................. ACAATTAAAGCCTAAGGTTAAAGAATTCGCAGAGTT 107911 30 96.7 38 .........................C.... ATAGTTGGATCATTGATTGATTTTGGAATGCAGAAAGC 107979 30 100.0 34 .............................. TTGATCAAATCAATAGGTGACTCACGGACCTTGT 108043 30 96.7 36 ....................G......... AAGGACAAAGGCCAAACGGTACACTTTACAAACCCA 108109 30 76.7 0 A......C.C.....C.A.....CA..... | ========== ====== ====== ====== ============================== ====================================== ================== 36 30 99.2 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACACACGTGCAAAAATCGGTATTCGAAGGCGAAATAACCCCAGCACTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTGTATAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTAAGGCTGTTTTTGAAGTTCGGCTTGTAAGGTTTGAGAGCGGGAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TCAATTTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTGCCAAGCAATGTTCGCAGCAGTATACTCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAACACTGTACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATGTCACGTGTATCAATAAAGCTCGTCCGCGCATTGCCTGCAGGAATGAATAAATCATCATGTTTCTGAATA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 952-1252 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQU010000027.1 Listeria booriae strain FSL L7-1594 NODE_27_length_30751_cov_38.376019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 952 37 100.0 29 ..................................... AAGGTGCTGTGGAGGAATTAAGCGGTGCA 1018 37 100.0 29 ..................................... CTTAGATAACGGGCTGTATAAAATCGACT 1084 37 100.0 29 ..................................... TTATCCAGGGATTGTTAGAAACATACGAC 1150 37 94.6 29 T................A................... CTAATGAGTATGCAGATGAAAAAGACCTA 1216 37 86.5 0 ...............T............T.T.T...A | ========== ====== ====== ====== ===================================== ============================= ================== 5 37 96.2 29 GGTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Left flank : TACTGTACAGATATCCCCATATCGAATATCTTCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATGATTTCTTCACCTTGAAGTGTTATAGGTAACGCCTTGCTACCATCTTTCTTCAATAAACGAATAACCTCATCATTTTTGAGAAACGGTTCTAGCGAATCTTCCAAGTAAAAAGCATCAAGAACTATTTGCTCCTCCTTTACGAAGAGATAACTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGACTGTCTCGTGAGTCGAGGAAAAAAGTAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCTAAACTAAAACAGAACACACCACTGTTATAGCAAGAAAATACTGCGTCATTTACTACTGATTGGATGAGCATCCTTTGAATGCTCTATTTTCTATGGCTACTAACCTCCGATTAATTAGAAATAACTTGTCCCACTTATCCACAGTAGA # Right flank : AGTAACATCATATTGCGTCCTCTTATCCTATCCAATTTCGTTTTGAAATTGACTACAATGCCCTATGTCAGATTTCTAAAAGTCTCTTCACTATACCACAATACTCTTCCGAAACCTGATTTGTTTCTATATAGCTATCATGGAATTTTTTTTCACCTAGATGTCTCAGTTTTTTTGGCTTTAAGCTTTTTATCACCAACCTATGTTTATTTTCTTTCAAGTTAGCAAATTCAACACTCATACCATGCCTATCTAAAATATCGATTAATGACTTGGAAACGGCATTCTTTAATTTACGATCATACTCAAAAATTTCTCTTAACCGCTCAGACAAATAGAGCAATGTGTAATCAGATTTGGGTGATAAATAATTTAGATGTGCTATACGATTCCTTGCTTCTTTCTCAGACACAAACAGTTCTTCTTTTTTCATGAATATATCCAACTTTTTAATACTTTTTAGTCTATTATCGCCCCAATATTTCACTCTCTCAGTAATT # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.40,-6.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 4714-5014 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQU010000027.1 Listeria booriae strain FSL L7-1594 NODE_27_length_30751_cov_38.376019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4714 36 100.0 30 .................................... ACAGGCGAAAACTTTACCTATGACGACGTT 4780 36 100.0 30 .................................... TATCGGTTGTGACCTAGAAGTTTTTCAAGG 4846 36 100.0 30 .................................... TCATTTGGTAATACTGTAGCAAAAATGATA 4912 36 94.4 30 ..........C...C..................... AAATTCGACAAAAAGCTAGAAAAAGCGATA 4978 36 83.3 0 ................A.........TG.A..C..A | A [5007] ========== ====== ====== ====== ==================================== ============================== ================== 5 36 95.5 30 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Left flank : TAATACCGCTGACATTAATTCTGTTATTTCTTTATTGATTGCTTTGTTGATTGCTATTTTACGTTTATCTTTTTCTTTTTTGTTGGGTTTCCTCACTGTTTTGTTGAGAATACTCTTATAAAACGACTCTTTCTTTTTATCAAATATAATTTCTTCTGTCTTGTTCTCATCAATACCTTCATAAACCAACTGGCCTTCTTTACTTGTCCTCTCCATTACGATAGTTCTTCCATCAACTCTCATTTTGGTGATTTTCATTTGTCTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAAATGTTTCCACCTTCATACGTGTCTGATATTGCTAATATTTATCAATATATTCATTATACAAGAAGGTATTGCGCAAAACAACATCCATTGGCAATTATCCACTTTGCTAATAATTGAATAAAGCCATAAAAACTACTGATCCAATTCTTTGAATCACAGTTTTTATGGCTTTATTGTCGAATACTTATCCACAGAAGAGG # Right flank : ATCTATTTTACTTTCAACAGTTTAACTATACCAGATTATTAGTAACTCTTCATCTTCGCGTAATCACACGTACTAAGTAACTGTATTTAGCTATAATTATGGCTTTTATAATACGAAACGTATTCATCAATCTTTAGGATACTTAACACCAAACGATTTTGAAAGAAATGCGAATTAAATTCTATTTATTTTTGTCCAAGATATTGACAACACATCAATATCGCCAATCGTTCACTTTACTCATCTAATCATATCTAAAAAGGATAGGAAGTCTTTTGCAATCCAATAAGTATTTTCTTCATCGGTTGATTCTTCAAACTGAAATGAGTCATCCCAATAATAGATACCTTCAAATTCTCCCTCGCAAATCATTACAATCATTCCTTGCATGAGATCATCGCCAATAATTATTGAACCTTCCATCATATCTTCTTTTAGTTTTTCCATCCACGTCTCTATATTAGAGGCACTTTCCCCAGTGTTCACACCATATAGCACAT # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 100493-96161 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQU010000006.1 Listeria booriae strain FSL L7-1594 NODE_6_length_158373_cov_32.345195, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 100492 30 100.0 37 .............................. TTCTTAGCGCGGCAACTGCGGCAGGAAATACCGTTGA 100425 30 100.0 37 .............................. CTTTCTAGGTCGATATTCCAATAAAGAAGACGCCATC 100358 30 100.0 34 .............................. TTAATAATAAAGCTAGAGTGATACAAAGATTCTT 100294 30 100.0 36 .............................. TTCGGTGTATCGCTTGCTCGAATAGTAACATTCACA 100228 30 100.0 36 .............................. TCTTTGTACTCGATAGTAAGTTAACTCGTCGATTTT 100162 30 100.0 36 .............................. CACCCTTGATAATGATGGAAATTATGAGGAATTAAC 100096 30 100.0 37 .............................. TACACATTATGTTCACATTCTTTAATAATGTACTGCT 100029 30 100.0 37 .............................. TTCCCACTTTCATCAATTACCCATTCATCCTCATAGA 99962 30 100.0 36 .............................. ACGACTATTACAGCAGAAAAAGCTAAGATAACGCTT 99896 30 100.0 35 .............................. TTCATAAGGGTTACGAGGTGGATTATAAGACATGA 99831 30 93.3 34 AG............................ CGGTATAGTCCGTATTCCATTAGTTTTCTAAATT 99767 30 100.0 37 .............................. TTTCTCTGCTTGCTACAGCTACAGTTAGTACACTGTT 99700 30 100.0 36 .............................. TCGATTTCCGTGCGTACTCGTAAAGGCACACGCACA 99634 30 100.0 37 .............................. CATTATTACCTTGATTATTAAATTGATTCGTTAATTC 99567 30 100.0 37 .............................. TGCCACTAAGATTAATTGAATTGTCATTCGCTTCTGC 99500 30 100.0 40 .............................. CAACCAGCTCGAAAAAGAAATCGCAAGCAAAATGGCGGAA 99430 30 100.0 37 .............................. CATTGAGGGCAATCAACTTCAATGTAAACTGGTTGTA 99363 30 100.0 37 .............................. AGATAAGTTTTAAATATATGAAGGAGCAACGATTTTT 99296 30 100.0 35 .............................. CCCTGTAGTTCATTTAAAACGCCAGAATCTATTTT 99231 30 100.0 36 .............................. ATCAAAAAAGGTATTGACTACTTCCCTTTAGATGTT 99165 30 100.0 36 .............................. CGATTATCCCTCGTAGGTGAGGATTACCCGAAACTC 99099 30 100.0 36 .............................. GATACTGTAGCTGGAGCCCCTAAAACAAATAACGGA 99033 30 100.0 34 .............................. ACGTGAGGCTTTATTTAAAAGATTTTTGGCTCTT 98969 30 100.0 37 .............................. TGATAAGTGCATAATATTCGCCTGTGAACTCATAAAA 98902 30 100.0 35 .............................. TGCCGTGCGTCACATTAAGTTTTAGCTTTAACATG 98837 30 100.0 36 .............................. CGCGCAACAAGTCGAAAATCTGGTCGCGACTGGCTT 98771 30 100.0 36 .............................. GCGTAATTCTGAAAGAATGATGATTGATGCTCTGAT 98705 30 100.0 36 .............................. GAAGAAGCGGAAACAGAGGCGCCAGCTAAAAAAGCA 98639 30 100.0 36 .............................. TTTCAATAAAATATTCTATTTGCACACACAGCTTTC 98573 30 100.0 38 .............................. AAACCTGTGACAGTAACATTAATAACAGTAGTGACGCT 98505 30 100.0 36 .............................. TCGTTAGCATAAAAGACAAACGCCCAGAGCTTAACA 98439 30 100.0 37 .............................. TTCTTAGCGCGGCAACTGCGGCAGGAAATACCGTTGA 98372 30 100.0 37 .............................. CTTTCTAGGTCGATATTCCAATAAAGAAGACGCCATC 98305 30 100.0 34 .............................. TTAATAATAAAGCTAGAGTGATACAAAGATTCTT 98241 30 100.0 36 .............................. TTCGGTGTATCGCTTGCTCGAATAGTAACATTCACA 98175 30 100.0 36 .............................. TCTTTGTACTCGATAGTAAGTTAACTCGTCGATTTT 98109 30 100.0 36 .............................. CACCCTTGATAATGATGGAAATTATGAGGAATTAAC 98043 30 100.0 37 .............................. TACACATTATGTTCACATTCTTTAATAATGTACTGCT 97976 30 100.0 37 .............................. TTCCCACTTTCATCAATTACCCATTCATCCTCATAGA 97909 30 100.0 36 .............................. ACGACTATTACAGCAGAAAAAGCTAAGATAACGCTT 97843 30 100.0 35 .............................. TTCATAAGGGTTACGAGGTGGATTATAAGACATGA 97778 30 93.3 34 AG............................ CGGTATAGTCCGTATTCCATTAGTTTTCTAAATT 97714 30 100.0 37 .............................. TTTCTCTGCTTGCTACAGCTACAGTTAGTACACTGTT 97647 30 100.0 36 .............................. TCGATTTCCGTGCGTACTCGTAAAGGCACACGCACA 97581 30 100.0 37 .............................. CATTATTACCTTGATTATTAAATTGATTCGTTAATTC 97514 30 100.0 37 .............................. TGCCACTAAGATTAATTGAATTGTCATTCGCTTCTGC 97447 30 100.0 40 .............................. CAACCAGCTCGAAAAAGAAATCGCAAGCAAAATGGCGGAA 97377 30 100.0 37 .............................. CATTGAGGGCAATCAACTTCAATGTAAACTGGTTGTA 97310 30 100.0 37 .............................. AGATAAGTTTTAAATATATGAAGGAGCAACGATTTTT 97243 30 100.0 35 .............................. CCCTGTAGTTCATTTAAAACGCCAGAATCTATTTT 97178 30 100.0 36 .............................. ATCAAAAAAGGTATTGACTACTTCCCTTTAGATGTT 97112 30 100.0 36 .............................. CGATTATCCCTCGTAGGTGAGGATTACCCGAAACTC 97046 30 100.0 36 .............................. GATACTGTAGCTGGAGCCCCTAAAACAAATAACGGA 96980 30 100.0 34 .............................. ACGTGAGGCTTTATTTAAAAGATTTTTGGCTCTT 96916 30 100.0 37 .............................. TGACAAGTGCATAATATTCGCCTGTGAACTCATAAAA 96849 30 100.0 35 .............................. TGCCGTGCGTCACATTAAGTTTTAGCTTTAACATG 96784 30 100.0 36 .............................. CGCGCAACAAGTCGAAAATCTGGTCGCGACTGGCTT 96718 30 100.0 36 .............................. GCGTAATTCTGAAAGAATGATGATTGATGCTCTGAT 96652 30 100.0 36 .............................. GAAGAAGCGGAAACAGAGGCGCCAGCTAAAAAAGCA 96586 30 100.0 36 .............................. TTTCAATAAAATATTCTATTTGCACACACAGCTTTC 96520 30 100.0 38 .............................. AAACCTGTGACAGTAACATTAATAACAGTAGTGACGCT 96452 30 100.0 36 .............................. TCGTTAGCATAAAAGACAAACGCCCAGAGCTTAACA 96386 30 100.0 36 .............................. AAACAAACGAAATACCAATACTACGAAGTAAATGAC 96320 30 100.0 36 .............................. TCGAGTACAGCGAAAGCTACTAAAACAGAGGTCATC 96254 30 100.0 35 .............................. TGGTTTGGAATTCCACCATCTTTTATGAATGCCAT 96189 29 86.7 0 .................A....-.C..G.. | ========== ====== ====== ====== ============================== ======================================== ================== 66 30 99.6 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGCTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGTATTCTAAAATCACGTTCATTAATCAAACGCCTAGGTCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAATAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGAAAAAGAGGGGATGGTTGATAAGTGGTGTTTGGAAAGCGAGGACCAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTATGCAAGGGATTGAGTCTATTTTCGAAGCTCGGGTTGTAAGGTTAGAGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATCGGGTACCT # Right flank : TAGATTGCCCACAGATGCAGTGTTTCTATCCATTTTTACAGAAGCAATTATCATTTAACAGCTTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCCAGTATGGTGCGGAATTTGGTGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACCGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAACCTTGCGAAACAAATTGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGGAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 27859-28878 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQU010000016.1 Listeria booriae strain FSL L7-1594 NODE_16_length_89168_cov_31.146872, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 27859 30 100.0 37 .............................. TTAAATGAAGAAAACAAAGTTGGCATAAAAACAATTA 27926 30 100.0 35 .............................. AAATTAACAGGGATGTTTATTCGAAATGACATTAC 27991 30 100.0 35 .............................. TATGATAACTTATTGACATTCTCATACACAGATTA 28056 30 100.0 37 .............................. TTTCTCGGCTGTGCCGTACGACGATTTCTGCACGTCG 28123 30 100.0 37 .............................. TTGGCATAAATTCAAAGCATTATTAACATCGCTTAGC 28190 30 100.0 37 .............................. TTGTTATCTTTTGTAGCACGATATTTAGCACGTTGTT 28257 30 100.0 36 .............................. GAACTTCGCATTCTTGGTCACCAATTTCTTGTGTCG 28323 30 96.7 36 A............................. TTGTATAGCGTTTCGCTTTATACTTATACTGCCGTT 28389 30 100.0 36 .............................. GATGCTAGTACCTTTCTAACGGGTTCCGTGATGGGC 28455 30 100.0 35 .............................. TTATATCTTTCCTTTCTATAGCGTCATACACATAT 28520 30 100.0 35 .............................. CGTACTGTTTAATATGGAGAATAAAGCCTTATCAA 28585 30 100.0 36 .............................. TTGTCAACACTTGAGACAGCCAAGAGAGCAGATATG 28651 30 100.0 36 .............................. TGAACTTTAGGAGAAACGTACTTAAAAGGTTTCATC 28717 30 93.3 36 ............GT................ CGGGCATACTTAGCCAAGAAAACTGAAAAGTATATG 28783 30 90.0 36 ............G...C...A......... TGATAGCCCGCTGGATTTTTTGTTTCTTTCACGCTA 28849 30 70.0 0 ........A......A.TC.A...C..GTA | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 96.9 36 GTTTTTATCTAAACATTGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTTGCCGGCACAACCAAGTCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGCCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTTGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCATAGGGAGAGAAAGGGGGAGGATGGTTTTCGAGAGGTATAAAAAAATAAACAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTAAGAGGGTACCT # Right flank : AGCGTATCGGCAATTTCACACAACCCATCTACAAAAATAAAAAAATCTGTCATCCTATCAAAATAAAAAGAGGGACATCGACAGATTTTTTTATGCAATAATACATTACCCGTATCTCTCCAAACAACCGTCTAAAAAAGGTATTACAACAATGGAGCTAAAAATATAGTCGCCAGCCCGTCCACAATATCATCTTCTGTATAGCCACTGACTGTCAGTTGACGAATTAAAAGTGGATTCAGCACAGCTGCAATGGTCGTGCTCCAAAAAAATGTATCCACATCTGTATCCACTTGCTCAAAAATGGGCTGGATGAGTTCTTGTACAATGACAATAGGTGGTGGGGGGCTATTAGGCACTTGATTATTGTTAACCAGATTTCCATCTATATGAGTAAGCATCACCTCTAACCAACTACTATGAGAAGAGATAAGAGAAACCAAGGCTCGAATTATAAAAACGCCTTTATCGTAACTTGTAGCTTCTTTATTATCATTCAT # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAACATTGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 32430-32790 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQU010000016.1 Listeria booriae strain FSL L7-1594 NODE_16_length_89168_cov_31.146872, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 32430 31 100.0 33 ............................... GAGGGATTACAAGGTATCAAAGTGTTTGATTCG 32494 31 100.0 34 ............................... AGAAGAAACAATCCCCCTCTGCAAAAAGTACGAT 32559 31 100.0 37 ............................... CATATCCCTGTGATTCTAGATACTCTACATATTTTTG 32627 31 100.0 36 ............................... TCCGAGTTTTCGAGCTCTTTTGTCATTTCCCGGATG 32694 31 96.8 35 C.............................. GATAATATATAAAGAAATCATTGCTTGGTCAGAAC 32760 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 6 31 99.5 35 AGTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GCAAAAATGATCAGTTTCTTAAGATTAAATCGTAAACTAAATCCATGACGACTATTCCAAAATGCATCCAATAATATTAAAAATAGGAAGCATTTTAGCATGGGAAGCCTGATTTGAAGTGCTAGATAAAGAACGCCTCATTCAGAAAACAACATTCGGCGCAAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAATACGAAAAGAAAATAATCCCTGCGAATAGCGCGATGAGTGTGCAAGATTGGAAGAACAAGATAATTTCTACAGAAAACCTTGATTCATAATAACGCGGAAAAAAATCTGTCGACCTCCAGTAGTGCAAAATGATGGGGGCATCGACAGATTTTTGTTATGTATTGGGACTAAAGAGTTTAAGCCTATTTTCGAAGTTCAGATTGTAAGGTTTGAGAGTGGAAATTTAGGATTTGGCTGCCTGTCGACAGATTCGGGTGTTTGAGGTATGATGGAAGTAAGCGTTGATGGGGTACC # Right flank : TTAAGTCAATTAATAACCATGATGTAGACGCCTAATCGTTTTTACCTAAGAAATATGCGAACATAGCCCATAGGCGATTATCTACACATTTCCTGAATATATGAGGCTAGCTTAAGTATTAAAAATAAAAGCCGATACTTAAAGTACCAGCCTCATAAATTTAATGTATTCATTTAAGAAAAATGTCTTTGTGGAATTCCAGTTTGTTTATTTAATAATTTTGTTCGTTTGCTATCTTTATAAACATACAAATCATTCCTATACTGGTGATTGTTGGCGTATTGTTTGATTGTAATGTAAGCGGTCTTATTTTTAAATTCGCTTATAATACCATACACAGAAAATGCCGCGGCTATCCAACCAAGACCTGGAACTAATCCTAGTCCGATCAACAGCTGCACTTGCCTTGCTAACTTTTGTCATCGTAGCTGTAACCTTTCTGCTTGTTACTAGTTTCATTGAGCTATTTGAACTTGCTCTTAATAATAGGGGAGTTGAGC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 3 36620-38032 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQU010000016.1 Listeria booriae strain FSL L7-1594 NODE_16_length_89168_cov_31.146872, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 36620 30 100.0 36 .............................. TATAAAAACGCAAATGGAGAGCAACCAGTAGATTAT 36686 30 100.0 36 .............................. CAAGCTACCAAACCTAAGCTTAAAACAAGTAAAACT 36752 30 100.0 36 .............................. TTGTCTTATTATATGTATGCTTTAGGTATCCATTGC 36818 30 100.0 34 .............................. TGATGCAAGACCGTAACCTACGCGCTCCATTATT 36882 30 100.0 34 .............................. GTAGCTGGATCTTTAGGCTCAGGGATAACAGACA 36946 30 100.0 38 .............................. TGAATTTATAAAACACTTCAAATGAGTAGTTGCCTGGC 37014 30 100.0 35 .............................. CCAGTTTTGGAACCAACAGGTTCCCTTGTGTTTGA 37079 30 100.0 35 .............................. ACCGTTTTTTCCTTATCCGATGTTATGGAGTCATC 37144 30 100.0 38 .............................. TGCAGACAAGACTGTCGGCTTCGAGACCGAAGCGCCGA 37212 30 100.0 38 .............................. CGGTTTGTCGGTGAGTATATAGAAAATTGTACTAAAAA 37280 30 100.0 36 .............................. TTGTTTGCTACTAATTCGTAAATGTCGCGTGGGTCT 37346 30 100.0 34 .............................. TTAATTTTAACAATATTACTATCCATTTTATTTT 37410 30 100.0 36 .............................. CGTAGTATTTTTAGTAAGTCCGTTTTTATTTGCTCT 37476 30 100.0 35 .............................. TTTCTTGACTGATCCAGCAACTCTTGTGCTGCTCT 37541 30 100.0 35 .............................. AGAATTCAAAGATTTTTATACGGCGAATCGTATGT 37606 30 100.0 36 .............................. GTCATTCTCCAAGCAGGTATCGATATTTTGTTAGCG 37672 30 100.0 34 .............................. GTGAGAATTTGGGGGATTTGGATGGCGTGGAAAG 37736 30 100.0 36 .............................. TAGATATACCATTAAAGTCAAAATTATTTTTTATAA 37802 30 100.0 40 .............................. TCAGGAACACTTGCAGAATATGCAGACGGCGCTGGCTAAA 37872 30 100.0 36 .............................. AAAAGAAGACACAAACTGACGACACAAAGGACTAAG 37938 30 100.0 35 .............................. CAAGTTAAAAAATTCAGTTATACCGTGGTCGATGA 38003 30 90.0 0 TG.....................A...... | Deletion [38054] ========== ====== ====== ====== ============================== ======================================== ================== 22 30 99.5 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATTTGAAAAGCTGGGAACCATTCCAAAAAGAAGCGTTACAACATGAAATGAGCAATTTTGAAGTGCTAGATAAAGAACGCCTTGTTCAGAAAACAACATTCGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGAAAACCATTCCTGCGAATAGCGCGATGATTGTGCAAAACGGGAAGAAAAAGATAATTTCTACAGATAATCTAGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTATGTATTGATACTAAAGGGGTTAAGCCTATTTTCGGAGTTTGGATTGTAAGGTTTGAGGGCAATAATTTAGAATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : TAAGAACGACAACAATGACAATGTTTTTATCCAATCCCAATGTAAATATGAAACTCCCCCATAAACATAACATCCCCCAACCCAATAAACTATAAGCAACCACTAAACTACCCAAAGTCTATAAGTGTTTTTTGTCATGCTCAAAAAACCCATAGACTTGCTTACTGTAAATGAAACAAATAGGAAGTATAGAATATATTTCATACATTTAAAAAATATATTGGTGAAAAACATTTACAAAAATAAAATAATAGTGTAAAATTCTTTCTGAAAGGAGCGTTATGATGAATATAAATACACTAAAAGGACAATTGATAGTATCTTGCCAAGCTTTAGAAGGTGAACCTTTGCACAGTTCCATGATTATGGCGCGAATGGCGCTTGCTGCTAAAGAAGGTGGTGCTAAAGGAATTCGAGCAAATTCTCCGGAAGACATTCAAGCAATCAAAGGACTAGTGGATTTACCTATCATTGGCATTTGGAAACGCGATTATGAAGGT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //