Array 1 403078-402586 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013246.1 Clostridium botulinum strain CDC_69094 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 403077 30 100.0 37 .............................. TTGGGTAGTCTGTACCTTCTAGTAAATTCGTTGTCCC 403010 30 100.0 37 .............................. TAGCTTATTGATTCGTATTTACTAGCGATTGTATTAA 402943 30 100.0 35 .............................. TTTTCTGTTCCATACATTTTTTCTACTTTGAAACT 402878 30 96.7 35 ................G............. GTAAAAACGTTATGCTCTCTACGTTCTACAGTTGG 402813 30 100.0 35 .............................. ATCCAAATTGGAATATATAATTTTTTGCTACCATC 402748 30 96.7 36 ...............G.............. TATTCATCTCCCATAAGATCTATTGACATTTTTAAA 402682 30 93.3 35 ........A......G.............. GAGAAGTTTCCAACTTGAACAAACAACCCATTCAT 402617 30 93.3 0 ................T............A | TA [402590] ========== ====== ====== ====== ============================== ===================================== ================== 8 30 97.5 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : AATAAAAAATATTCTTGGAAATTTAGATGAAAATATAAAAGAACTCTTTATAAATAATCCATGTATACAAGTCAATAATGAAAGAATTGGAATAGAAGAGATGAAAGAAAAAAATATACCCATAGAATTATTAAAATCATCTGAAAAGGAAATTGACACTACACTTGATGCAGACGCTAATAACAAGTAGTATCTATAAAGGGGGTGAAAATGATATGGTATTACTGAAAATAGAAATTTATATAACTAGATTGCTAGTATATATCTATAAAAATTTAACCTTTTTACCTCTCTTTATAAGAAATAAATTATTAAGATATATTTCAATAAAAACATTTGATATAACTGAAGCAATGCATAAAAGAAATTTGTTATAGATTTTTAAGGTACTTCTATTATGGGAGTACCTTTTATTTTTTTTGCTTACTTTAATTTTAAAACCTTGTAAAATCAATACTTCTATGTTATCCTTTAAAATAAGGAATGGCTATTTTACTATG # Right flank : ATAGTAGTTGTAGCTTATGCTATAGCTACTATTTTTTCATTACTTTATTGGGAAAATTGTTATAAAATATATAAAAAATTGCATAAAAGGCATTGACTTATTATAGTACATGTACTATAATATAATTGTAGGGAGGTGAGGGAATGACAAAAAAGAAGAAGTTAAAAAGGAAGGATAAAAAAGAAATAATCGAGTTAATAACCGCCACAGTTAATTTGATTATTTCTATAGCAACACTAATCTTACTAATACTAAAGGGCTTTTAAAAGCCCTCCCTTCCTAAAAACTTCTTCTATTTAATAATATCATATTTTAAATATTAAATAAATAGAGGTGATTTTATATGAAAAAGGAAAACATAACAATGACAATAAATATAATCACTTTAATAGTAAATATATTAATCCTAATAATATTATTGGTTAAATAGGAGGTTTATATGAACAATAAAGATAGACAAAAAGTGGCGGATAAAAAATGGATTGAAAAAAATAGAGAAC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 698608-698237 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013246.1 Clostridium botulinum strain CDC_69094 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================================================== ================== 698607 29 100.0 36 ............................. TATGGGTGTATTATTAAAAACTAATTTAGCTTGTGC 698542 29 100.0 37 ............................. TAATTCTTTTTGATCTATATGACTAAAACCTTTATAT 698476 29 96.6 37 ........A.................... TGGTGATATGTCAAATAGATTTATTCCAGATATTTCA 698410 29 93.1 116 ........A......G............. CAGAGAACCCAAATCTGTGATTTGGCGTGAATCGCTTACTCCTTAGAGGCAACGAGAAGGAGTTTCATAAAACAATCAAAGCTTTATTATTTTAAAATTAAGTATGCTTTTAAACT 698265 29 86.2 0 T.......T......G............G | ========== ====== ====== ====== ============================= ==================================================================================================================== ================== 5 29 95.2 57 GTTGAACAGTAACATAAGATGTATTTAAA # Left flank : GCAGGATTGAAGATTATTTAAATTAAATGAAGAAGGCCATTTAATTAATGGGTTGGATATTAAACATTAACATGAGATGTATTTAAATTTTTACAAAAATGCAAGTTGGCTCTGGACAAATTGAATTGAACATTAACATGAGGCGTATTTAAATTCTAATGGTGTTAGAATTACTTTTTTAACATTATATGTTGAACATTAACATAGTATGTATTTAAACAGAGAACCCAAATTTGTAATTTGGCGTGAATCGCTTACTCTTTCGAGAAGAGGAGAAGGAGTCTTATTAATGAGCATAATGTATATCTTATATTTAATTAAATTTTTCCAAGTGAATTTAAAATTGAAACCTATTCTAGCCATTGATATATAAGGCTTAGAATAGGTTTTTGTTATGTGCTTATTAAAAAACGTAATCACTTGGAAAACTTTCTATAAAACCTTGTAAAATCAATACTTATATGCTATTCTTAAAACTAAGGAATGGCTATTTTACTATG # Right flank : TAGCGAACCCAAATTTGAAATTTGGTGTGAATCGCTTACTCCTTAGAGAGTGGCATAGGGATTTTTATAAAACTAAACTATGCATTGTGATAATTTCTATGTAAATTATTAATTTAATATTAAAAACCTGTCTATTTTTAGGGCAGGTTTTTAATATTTAAAGGGAATAGATAAAATAATTTTTGGTAGCTATGTAAATATTGTATATTATTTTATATTTTTGAAGGATTATCCATAACTCTGTAGAAGAATATTTGTGTAGGAAATATATTATAAAAATATGGAGGGAGTATTGTGGATAAATTTCGTAATATGAAAAAATCTCATATAGCCTTATTAGTGGTAATGTATATGGTGCTAATGGGAAGTTTGCCTAGATTTACGGGATGGGCAACTATTTTTTCAGCAATTGCAGTGGGAGGTTATTTTTTAAAGAACAAAAAAGACTTAAAAGAACTAACTAATAAGAAGAAAAACTTTATATTTACAGGTATAATAAT # Questionable array : NO Score: 3.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-2.26, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 3 699234-698888 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013246.1 Clostridium botulinum strain CDC_69094 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================================= ================== 699233 30 100.0 37 .............................. TAGAGAGGATATAATAATCGCTTGCATGGGCGGTAAA 699166 30 100.0 87 .............................. GTAATGCAAATACTGCAAGTCAAATTAATGCAGGATTGAAGATTATTTAAATTAAATGAAGAAGGCCATTTAATTAATGGGTTGGAT 699049 30 93.3 36 ...A..C....................... TTTTACAAAAATGCAAGTTGGCTCTGGACAAATTGA 698983 30 90.0 36 ......C...........GC.......... TCTAATGGTGTTAGAATTACTTTTTTAACATTATAT 698917 29 86.7 0 G.....C........-.............C | T [698899] ========== ====== ====== ====== ============================== ======================================================================================= ================== 5 30 94.0 49 ATTGAAGATTAACATGAGATGTATTTAAAT # Left flank : ATACATAACATCAATAGGAGAACTAAAAAGAAAAGATAATTCTTTATGTTTTAGAAAAAACAATAAAAATGTTTATATACCAGTAGAGAATACTAAGGAAATTTATTGTATGTCAGAAGTAAGTATAAACAGTAAATTATTAGATTTTTTATCTCAAAATAATATAGTAATGCATTTTTTTAACTATTATGAAGGGTACAGTGGGACTTTTTATCCGAAAAAGCATTATAATAGTGGGAAACTAATTGTAAAACAGGTGGAAGCCTACAAAGATAAAAGATTAATGGTTGCTAAGAGCATAGTATCAGCAATTGGAGAAAATATATATGAACTATTATACCATTACTATAGACATGATAGAACGGAAGTAAAAGGAACTCTTGAATGGATAAAAAATGATATGAAAATAAATTTAGAAAAAGCAAATAATATTAAGGAAATAATGCAGGTAGAGGGAGAAACGTGGTATAGATTTTATGGAGAATTTAAGATTTACTATA # Right flank : AGAGAACCCAAATTTGTAATTTGGCGTGAATCGCTTACTCTTTCGAGAAGAGGAGAAGGAGTCTTATTAATGAGCATAATGTATATCTTATATTTAATTAAATTTTTCCAAGTGAATTTAAAATTGAAACCTATTCTAGCCATTGATATATAAGGCTTAGAATAGGTTTTTGTTATGTGCTTATTAAAAAACGTAATCACTTGGAAAACTTTCTATAAAACCTTGTAAAATCAATACTTATATGCTATTCTTAAAACTAAGGAATGGCTATTTTACTATGGTTGAACAGTAACATAAGATGTATTTAAATATGGGTGTATTATTAAAAACTAATTTAGCTTGTGCGTTGAACAGTAACATAAGATGTATTTAAATAATTCTTTTTGATCTATATGACTAAAACCTTTATATGTTGAACAATAACATAAGATGTATTTAAATGGTGATATGTCAAATAGATTTATTCCAGATATTTCAGTTGAACAATAACATGAGATGTA # Questionable array : NO Score: 4.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-1.29, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAGATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 4 735208-734916 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013246.1 Clostridium botulinum strain CDC_69094 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 735207 30 100.0 36 .............................. TCCTCCATATCTCACATATCCTTTCTAAAACATTTC 735141 30 100.0 34 .............................. GTTCTGATTTCAAATTTATTTACTATCCTTTCTA 735077 30 100.0 36 .............................. AAAGTAAGTTTACTCTAGGTTGTCGAACTGTTCCCA 735011 30 100.0 36 .............................. TACATTTTCATAAATCCAGTTGCCACTTTATTAACA 734945 30 96.7 0 ......T....................... | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 99.3 36 GTTGAACAATAACATGAGATGTATTTAAAT # Left flank : GCATGGCATCAATTTTATCATAGGCATAGGTTAATCCAATAGTTAAAAAAAGTTCTGCGGTTATATCAGAATGAGTAAGGGTGTAGCGTCTTCCTAAAATAGGTTCTGTATTAGTTACTCCATCTCTAAATTCCACTGAAAGTTTTTCAGGGTTCAATTTGCTCATTTAATCCCTTCCTGTACAATATTTCTCATAGGACTATTATACGATTAGGTTAAGGAAGTTGTCATTTAGGTAGCTATAAAATCTATTATAATATCATTAGCGCTATATAAATTTATAAAAAGAATATTGAAATAAATAAAAGAAAAGAACAAAAACTTTTTCCAATCGACTTTAAGTTGAAAATTTATCGAAATCATTGATATATAAAGGTTTAGGTTAGGTTTTTTATGTAAATTTGAAAATACCCTAATCAGTTGGAAATTTTTATTTATAACCTTGTAAAGTCAATGGTTCTATGATATTCTTAAAATTAAGGAATGGCTATTTTACTATG # Right flank : TCATATTCCCATTCATCTTTGCAATCTTTTCTCTTAGTTGAACATTAATATAGATGAAAAGCCACCCTTAATAATTAAATATATGGGTGGCATAGTTGTATTTAATTTATATACGAAACGATTGTAAATAGTTTTGTATGTCTTCTTCAGAAGTATTGAGCAAATCAGTAAGCATCCTTTGAATAGAGTGCAGGGTTTTAATTCTCTCTTCAATTTCGCAGATTTTATTCTTTACCAATCCTTTTAAATTCTCTCCATCCATTTCTTGGCTGAGCATTTTCAGTATTTCTTTGATTTCTTTTAACGAATATCCTAATGATTTAGCATCTTTGATGAATTTAATTTTCACAAGATAATCATCTGTGTAGATTCGATAACCATTGGCTATCCGCTTTGGGGCAGGCAAGATGCCACTATCTTCATAGTAGCGTATAGTTGATGTACTTATCCCAGTTTGCCTTGCTAGTTCACCGCGTGTCATTTTGTTCACTTATATTACC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 5 3472574-3472868 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013246.1 Clostridium botulinum strain CDC_69094 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3472574 30 100.0 36 .............................. TTGTAATAATATACTAATACAGTTAAAGTGCAAGAA 3472640 30 100.0 36 .............................. AAATCCTAATAGAAATGTAGAAGCTAGTACAAGAGA 3472706 30 100.0 36 .............................. TATTGTACTTTATGATTTAAAACCTGACTTTTATCT 3472772 30 100.0 37 .............................. ATATGTGTTAAACATTTTGCCAAACATAGGTGATTTG 3472839 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 100.0 36 ATTGAACATTAACATGAGATGTATTTAAAT # Left flank : AATGTTTCATAAAGAAATAGATTATGAAAATATTAAAGAGGGAGAATTAGATGAAATTTTAGAGGGGATAAAAAAAGAATTTTATGATCTAATAATATCAGTAAAAGAAGAAAATAAAAATATAATATTAGTTACTAATGAAGTAGGTTATAGCATTGTTCCAGCCTATAAATTAGGTAGGATATTTAGAGATTTTCAAGGTATTATAAATAAATTTATAGCTTCCTTGAGTGATGAGGTTTATTTAGTAACCTGTGGAATACCCTTAAAAATAAAATAAAATTAATTTTAGTAACTAATTAATCTAACTATAAGTAAAAGAATTTTCCAACCGCATTTAATTTTAAAATCTATTCTAGGTATTGAAATATAAGCTTTAAGATAAGTTTTATCTCTACCTTTATAAAAAATGGTAAACGGTTGGAAAAATTTCTTTAAAACCTTGTAAAATCAAGGCTTATATGATATTCTTAAAATTAAGAAATGGCTATTTTACTATG # Right flank : TCAGCATGTAAAATAAGGTGATTCAAAATAAATTAAATCTATTTTGAATCACCTTATTTTTGTGTAACAAATACAAGCTATTTTAGATAATATTTTAAAAAAGCATATAATTATTATTTTATATTGTCACAATAAACATTAATAGCATCTCTTAAAAATTTAGAAAGACCAGTTTTATATTTATCTATATTAGCAGTAAATCTTTCATCATTAACATAAATTTCTCCAAGACCTCTAAATATTTCAGGAGTACAATCATAAAAGTTTTTTGAAATATGCTCTCTAGATTGGTGTATACATTCTTGAACTTCTTTATCATCTGGATTTTTGTCCATAAGATTTGCTAGTTTTTTATAAATAATATCCCAATCTTTCATTATATTACTCCAATCTTCCTTTGTATATTTAGATGTTTTTTCATTACTTTCTTTATAAGCAGAGGTGTTTCCATATTTTTCTTTTACATCTTCTGAATATTTTCTTTGATGCTCCTCTATTTC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //