Array 1 41249-42711 **** Predicted by CRISPRDetect 2.4 *** >NZ_VECJ01000010.1 Micrococcus luteus strain DE0249 NODE_10_length_99761_cov_77.960802, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 41249 36 100.0 34 .................................... TCCGTGGCGGGACCATGTATGCGATCTGGCGGAC 41319 36 100.0 37 .................................... GCGGCCCACCACGACGCCCTCTACCGTGGCACCCTGA 41392 36 100.0 35 .................................... CGGGGCCGTTCCGTGCTGGGCATCGACCCCGGGTT 41463 36 100.0 35 .................................... GACACAACCCCGCCCGAGGAGACTGCAACCCGCGC 41534 36 100.0 38 .................................... AACAGCTCATCGGTGGCCACGGCGTGCGCGCGGGCCTG 41608 36 100.0 37 .................................... GGTCACGGCAAGGATTTCGCGCGGGGCATCGCGTCCA 41681 36 100.0 35 .................................... CGGATCGCGTCCCCGAGGTCCCGGATGGACTCGCC 41752 36 100.0 36 .................................... TTGCCGATGACCTGGCTGGACACGTCGAGGCCGTCC 41824 36 100.0 35 .................................... GAGCCCGGAGACGTGACGGTGGCGAGGTCGCGGGT 41895 36 100.0 36 .................................... ATGAAGGCCACGGTGCCGCTCATGGTGTCCAACGCG 41967 36 100.0 35 .................................... GGGCACACCGCCGTGGTCATCGGCAACCCGTCCGG 42038 36 100.0 34 .................................... CAGTCAATCCGCAACCACCAGAAGAAGCACATGC 42108 36 100.0 35 .................................... GCACCGGACGCGGTGGTGACCGAGCTCCGGGCCTG 42179 36 100.0 39 .................................... TGAACATCGGTGAGGCGGGGGGTGGTGTGTCCGGCACGT 42254 36 100.0 35 .................................... GTCACCAGCATCGCCCCGGGTCCCCAGCCGCGCGC 42325 36 100.0 34 .................................... CGTCAGCAGCCGTCCGGTGAGCTGGCGCAGGTCA 42395 36 100.0 34 .................................... CTGGCCGTCGCCAACGACCCGGACGAGGCCCTCC 42465 36 100.0 34 .................................... CAGGGCATCAACCGTGTACTCGCCCCCATGTGGG 42535 36 100.0 35 .................................... GGCGACTGGGAGACGAGCGGCAACCGCAACCCTGA 42606 36 100.0 34 .................................... CCGGCGCAGTGGTGGTCCGTGCAGGACTACCTCG 42676 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 21 36 100.0 35 GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC # Left flank : GTTGAGTGCCCGGGATCGTCTCCGGAGGAGGCTCATCGCCTATGACATTCCTGACGACCGCCGCAGATCCCGGGCGGCCCGCGTCCTCGAAGGGTTCGGAGATCGAGTCCAATATTCAGTCTTCGTGGTGGATGCCTTGCCCGCCCAGTTCGTCTCCCTGCAAGCAGCCCTCGAAGCGGTGCTGGATCCGGGCGAGGACAGCGTGCTGGTCTGCGACCTCGGCCTGACGGCCACGCTTGGCGCAGAGCAGTTCAGCTTTCTGGGTCGATCACGCGAGATCTCTGTGGATGGGCCCATCATCATCTGAAGCGAGCCAGGGACCTTCGCGAAGGCTCCGTCGATGTCCGGAATCCGGCGAGCCGTCGCATCAGAAAAGGGCTTGTCAGCCCACGGTTCATGGGTCGAGGCCGATAAGCATGGCGCTCCACGGACGCCTCTTGAGCCCAGGGCTCGCCGACGGTCGCGTCTGCCCATGTCAAAGGGCTGTAATCTGAGGTGCT # Right flank : CGTCGACGGGCGCTTCATGTACGCCGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGGTGGACCCTGCCCTGCATTATGGTGCGAGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCGTCGACGGGCGCTTCATGTACGCCGCCGTCTGCTCCGGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCTGCGTGTAGGAGCCGCCCAGGTGGCCGGCCAGAAGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCATTCCGCGCCAGCACTGAGATCGGAGGGGGCCCCCATGGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCGGTGCGCAGTGCGTGGACCCTGCCCTGCATTATGGTGCGAGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCTGGTTGCGGTTGATCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [36.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 2 42866-43762 **** Predicted by CRISPRDetect 2.4 *** >NZ_VECJ01000010.1 Micrococcus luteus strain DE0249 NODE_10_length_99761_cov_77.960802, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 42866 36 100.0 37 .................................... GTCGACGGGCGCTTCATGTACGCCGCCGTCTGCTCCG 42939 36 100.0 34 .................................... TGCGTGTAGGAGCCGCCCAGGTGGCCGGCCAGAA 43009 36 100.0 38 .................................... ATTCCGCGCCAGCACTGAGATCGGAGGGGGCCCCCATG 43083 36 100.0 40 .................................... GGTGCGCAGTGCGTGGACCCTGCCCTGCATTATGGTGCGA 43159 36 100.0 35 .................................... TGGTTGCGGTTGATCCATTCCACGCCTGCCGCCCG 43230 36 94.4 34 ......C................G............ GCAAGCGGCGGGCCGCGATGACCGGCCCCATCCC 43300 36 97.2 35 ...........C........................ GGGGTGCCCGGCTTCCACGTCATCGTGGACGTCAG 43371 36 100.0 35 .................................... ATCAAGGGTCTCGGCGCGACCGCCGCCCCCCTCGT 43442 36 100.0 37 .................................... AGGTCGAGGCCCGCGTCGGTGGGGTGTGCCCGGGTCG 43515 36 100.0 35 .................................... CCGGGCGGGCCGTCCCGGAAACGAAACATCTCGCG 43586 36 100.0 36 .................................... TCACGGAACAGGGCGACGGCGGAGAACCGTTGACCG 43658 36 97.2 34 ............T....................... GAGGAGTCGGTGGTGCTGATCGGCCCGCCGCGCT 43728 35 88.9 0 ............T..................-..CT | ========== ====== ====== ====== ==================================== ======================================== ================== 13 36 98.3 36 GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC # Left flank : GCAGCCGTCCGGTGAGCTGGCGCAGGTCAGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCCTGGCCGTCGCCAACGACCCGGACGAGGCCCTCCGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCCAGGGCATCAACCGTGTACTCGCCCCCATGTGGGGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCGGCGACTGGGAGACGAGCGGCAACCGCAACCCTGAGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCCCGGCGCAGTGGTGGTCCGTGCAGGACTACCTCGGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCGTCGACGGGCGCTTCATGTACGCCGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGGTGGACCCTGCCCTGCATTATGGTGCGA # Right flank : TCTCTAGGTGTGATGTCCAGGGAGGTTGTTGAGCCTGGTGGCAGGCGCGGCGCCGATCGCGGAGTGGACGCGATGATGATTGTAGAAGTGCAGCCATCCAGGCAACGCGGCCCTGCGCTCCGTCTCTGAGCTGTAGAACCGGGCGTAGGCCCACCCGTCAGCGAGCGTGCGATGGAACCGCTCAATCTTCCCGTTCGTCTGCGGCCGGTAGGGCCGAGTCCGCTTGGGCTTGATCCCGAGCTCGGTGCAGGCATCACGCCAGGCATGCGAGTGGTAGGCCGAGCCGTTGTCCGAGAGCACCCGCTCCACCTCCACGCCCAGGCGCGCGAAGTGGGCGACCGCGCGGCGCAACACCGCGATGGCCGTCTGGCTGCGTTCATCGGAGTGCATCTCGACATAGGCGAAGCGGGAGTGATCATCGATCACGGTGTGCAGAAAGCCCACCCCGAGCCGGGGCTGGTATCGGGCATCACGGGTTCCTTCGCGGTCCGAGGTCGCCG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //