Array 1 889415-892223 **** Predicted by CRISPRDetect 2.4 *** >NC_018409.1 Mycoplasma gallisepticum NY01_2001.047-5-1P, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 889415 36 100.0 30 .................................... TTTATAACAACAGATTACGCTTTTTTATTC 889481 36 100.0 30 .................................... TTATTTATTAAACGACGAACAAAGACGTTT 889547 36 100.0 30 .................................... AATAAATTTAAAATTGCCGATTGTGTTCAA 889613 36 100.0 30 .................................... TTATAACAGATAATAACACTTGACGCGCTT 889679 36 100.0 30 .................................... TCAGATAATTCTTCAACTGCAACAACGTTA 889745 36 100.0 30 .................................... TTTATAACAACAGATTACGCTTTTTTATTC 889811 36 100.0 30 .................................... TTATTTATTAAACGACGAACAAAGACGTTT 889877 36 100.0 30 .................................... TTGGGCTAATTTACCGTATAAACTATTAAG 889943 36 100.0 30 .................................... AAAGCCCCGAACAACTAGCTTTCGAAAAGA 890009 36 100.0 30 .................................... ATTCATTAACAAAAAAGATGTTAAATAAAC 890075 36 100.0 30 .................................... TTTTTTCAAAATTATACAATAACGATTTAA 890141 36 100.0 30 .................................... CAGATTTTAAGAAAGAACGTTTAATTACAA 890207 36 100.0 30 .................................... GTAATACTCAAGAACTGCATCGCGCAAGTC 890273 36 100.0 30 .................................... AAGTAACTTGCAGCCGTTTCATGATCAAGT 890339 36 100.0 30 .................................... ATCTTGTTATTATTAGCGTTTATTTGGCCA 890405 36 100.0 30 .................................... TCTTGTGTCTTGAAACTTGCTATAAAAGTA 890471 36 100.0 30 .................................... AAATAAGGGATATCAAACGACATATTATGC 890537 36 100.0 30 .................................... AAAGTTGTATTGTGTTTGAACCATTTCACT 890603 36 100.0 29 .................................... ATTTAACAAAGAATGAGATCGAATTGAGT 890668 36 100.0 30 .................................... AGGTTGTTCATGATTGACATTAAAATTAAA 890734 36 100.0 30 .................................... ATTCAATTGCGTTTTTTAAACGTACAAATA 890800 36 100.0 30 .................................... TTTGTTTTTATCTTGATTCGAAAGACATTA 890866 36 100.0 30 .................................... ATTCTGCCGCCACGATATCGATTTCAGTTC 890932 36 100.0 30 .................................... ATAAGAACAAGAACTATCTAACGCTTTTTT 890998 36 100.0 30 .................................... GTAAGTTGTCGATCTCTTCACTAACGACAG 891064 36 97.2 30 ......A............................. TTGTTGAGCTAATTGGACTTAAAGCAAATA 891130 36 100.0 30 .................................... TTGAAATTTGAATGTTTGGAAATCTTCACG 891196 36 100.0 31 .................................... GCAATAGTTTGTAAGCAAAACGTGGGAGGGG 891263 36 100.0 30 .................................... AATTAAAAGTTAAGAACGTTGTTGCTGACG 891329 36 100.0 30 .................................... TAGTGTATTTTAACCACCGTTCAAGCGCTC 891395 36 100.0 31 .................................... TTTTTTGTTAATGAATTAAAAATCTTATCAG 891462 36 100.0 30 .................................... TTTTTTAAGCTCATCTTCAAGGTGTTGATT 891528 36 100.0 30 .................................... TTTAAGCGTTCCGATCGTTTGTCAAATGTG 891594 36 100.0 30 .................................... AACTTATCTGCATAACCCTTTTGAATCTCT 891660 36 100.0 30 .................................... AAGTTGATCATTTAAATGAGCTTTTAAAAA 891726 36 100.0 30 .................................... ACGTTTGAGGTTCAGCTAATTCTGGGGTTA 891792 36 100.0 30 .................................... TAATAATCTTAATTTTAGTGTGTTTGTCGT 891858 36 100.0 30 .................................... GAATTAAATTATCTTTATAAGTAAAATAAA 891924 36 100.0 30 .................................... GTTTTGCTTATAAATTGTTACAAGACTTCT 891990 36 100.0 30 .................................... ATTCTGCCGCCACGATATCGATTTCTGTTC 892056 36 100.0 30 .................................... ATGGTGACGAATATAAACCCCAACTTGATC 892122 36 100.0 30 .................................... CAACAGCCGTTGTTAAAATTAAAAAAACTA 892188 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 43 36 99.9 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : TTGATAAAGAAGTTGTTGCTAAACTTAATGAAACGTTAGGCCGTGATATTATCTCGTTAGATACTTCTTACTCTAAAATTCTGAAATCAATAATCAAGATTTCAGAAGATTATATAGATCATGAATTTATCTATTCATATCTGGAGTTATTACATTGATCAAAAGAAATTAAAACAATTATCCTTAAAGACTTTGATAATATCGATCTAAAAAGGTTGAGTAATTTAACTCAAACTACTAATCTAATTATTATGAAAAATGATATTATCTATGATCTTGAAAAACATTTTGAGTTTTTTGAGACATACTGCTTGATTGATCATGATTATGAAAATATGATTAAGATTGATAATATGCCTTCTTTTGAATATTTATTAGAAGATATTTTCAAAGTTATGGTTGATGAAGAGTTTAAGACCACAATGTCTTTTCATCAGCTAGAAATAATTAAAAAGGAATTAAAAAAGCACATTAATTAGCTTATTTTACTTGACAATGAG # Right flank : CAAAAACAAGTATTTTTTACAAACGAAAAAGTTTTATCATTAAACATATTTAATCTGAAACAAAATTTTGAAATAAATAAACTTTACTTAATCTTTTGTTTCATATTAAACAACATAATTCCAGTTGCTACTGAGACGTTTAAGGACTGTATCTTATCAGTATACATCGGGATCTTGATCTGGTAATCAGCATTCTTAATTAGTTGACTCGAAACTCCCTTTTGTTCGTTCCCAACAATTAGAATTGATTTATTAGCATAATCAACATTATAATCTTGAGCTTGATCACTTAAATTAGACACATAAGATCAAAAGCCATACTTATCTTGTAGATCCTTGATCGCATAAGATAAGTTGGCAACCTCAATTAGATTAAGATAAAAACATGCACCTAGTGATGTTTTTATCACCGTGTTGTTAATACTTGCTTGGTTGTCTTTTTTAAAGATGACCCCAAGCACATTTGCTGCCAAACAACTCCGTAAGATTCCACCAAAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //