Array 1 103670-102971 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRP010000011.1 Nocardia farcinica strain N-25 NODE_19_length_175409_cov_40.983147, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 103669 29 100.0 32 ............................. GTCGGCACCTTGTGGCGTTCGGCGCTCACCTA 103608 29 100.0 32 ............................. ATTTTCGAGCAGCATACCATCCGGCCCGACAT 103547 29 100.0 32 ............................. AGTGGGCAACAGTGGCCGCTTGGCTACAGTGC 103486 29 100.0 32 ............................. CATTCGGCAGCCGCGTCGGCCATGCCCGTCGC 103425 29 96.6 32 ............................A CCGGGGGCAGGCCGGAAAGGATCGAATACCCG 103364 29 100.0 32 ............................. CGGACATGCCCGCCGACCTTGTAAAACACCAC 103303 29 100.0 31 ............................. TGAACAACAGCTAAGCAGTACCCATACACGC 103243 29 96.6 32 A............................ GGCCGACCAGGCCATCGTCGCGCCGCGAATCA 103182 29 100.0 32 ............................. TCGCAGCGGTGGGTATGGACGCCAGGAACCGC 103121 29 96.6 32 ..............T.............. ACCTCCAGCATGTCCGAAAGCTCCACAGCCAC 103060 29 96.6 32 ..............T.............. GACTGTTCAGCGATCAGGATGTGGAACCGATG 102999 29 96.6 0 ..............T.............. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.6 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CGAACACAACCGAGCCACATCCTTGCCCGCGCCGTGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAGCACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGTGAGTGTAGGGATCTCCGGATGGGCGGTCCGGGCTGCGGTGGTCATGGGTCGTCGACGGACCAGGCACGTGGGGCGTGGTCGGTCTCTCACGCGCCCCTTGGGAAGATCGCCGGCAAACTGAACGGGAGAATCCCGCAGGATCGGCGACGTACGATGACGGCGGCCTGCCGGTCTTGCCCCTCAGCGAGGTACAGCGGTGGAAAGTGAATGAAAAACGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : TGGCTCTCGGGTCCTGCGTCGACGGCTACGAGATGCCCCCGCGAACGCGGAAATGACTGAGGCGCCGCTTTCCGCGGTCGTAAAGGCGCTGCCATCGCCCTTCCGCGCAGAGGTCGACCCCCTTTGACGGCGGCTGTTCCAATTTCGGAGCAGGAGGGTCAGCTCACCCCCACCAGCGCCGCCAACGCCATTTCGCGTAGGGCCGGTCGGACGCGCTCCGCGTCGGAGGCGGTGGCGCTGTGCGGGGTCGAGTTCATCAGTCCGAACACCGCGTGGGCCCGTACGCGGGCTTCGCCTTCGGACAGCTGTGGGTGGACCCGCTGTAGCGCGTCCACCCACAGTTCGACGTATTGCCGCTGGGTGCGGCGGACGCGGCGGCGGGCGTCGTCGGGCATCTGGTCCAGGTCGCGGTCCTGGATGCGGATGAGTTCGGGCTCGCCGAGGGCGAAGTCGAGGTGGAAGTCGACGAGTCCGGCGATGACCGATCGCGGGTCTCCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : GTGCTCCCCGCGCATGCGGGGATGAGCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 152-801 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRP010000010.1 Nocardia farcinica strain N-25 NODE_13_length_211584_cov_41.512695, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================== ================== 152 28 100.0 33 ............................ TAGACTCTTTTCTCGTGTTGTGTGATCGGCCGT 213 28 100.0 33 ............................ CCGCGAAGGCGGAGGCGAGGACGAGAGCGACAG 274 28 100.0 33 ............................ CCAGAGAGCCGGTCACCACGAGCGCGCCCGTCG 335 28 100.0 33 ............................ CCACGGTCGCTTCACGACGTCCTCCTCTCAGGC 396 28 100.0 33 ............................ CATGCGTCGTAGAGGGCGGTAGCGGTCGCCTCA 457 28 100.0 33 ............................ CACCGGCCGTTCCGGGCTGCTCTCCTTGTCCGC 518 28 96.4 33 ...................A........ CCCGTTTTCCGGCAACGTGACCTCTTCGGGTAG 579 28 96.4 33 ..............C............. GCACCCCGTCCGGCGCAACAAGACCGCCCGCGA 640 28 92.9 47 ..............C..........C.. CCCATCTGCTTGTAGGAGGACCATCGTTTCGGTGCGCCGAGCTCGAC 715 27 75.0 32 A..T....G..A.....-C........A CGGTACGCCGATCCCGTTACCGCCCGATCCGC 774 28 67.9 0 .........C.C.GCA..A..GC..C.. | ========== ====== ====== ====== ============================ =============================================== ================== 11 28 93.5 34 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GCGAGGGGGTGAAGCCACTGCGCTGACCTTGATGGGGAAATAACTGGCCACCGTTGGGGAAAACCAACTGGCCACCAGCGGGGACGATTACCGGCCGCCCGCGGGGAGAACCTACTGGCCATTGACACTGAGGAACTGCAGGTCAGGAAGTG # Right flank : CCTCGGCTGGCAACGCCGCCGCGCCGCGTGTGCCCCACGCGTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTACCGCTTGCTACCCTCGCTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTCTCTCTCGTAAGACATCTCGCTGATTCCGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCATACACGGCAGCGGATCTCGGTCGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTACGCACGACATCGGGAAGCTCACGCCGGCATTCGCGTGCCAGGTTCCCGAGCTGGCCGA # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9929-10671 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRP010000010.1 Nocardia farcinica strain N-25 NODE_13_length_211584_cov_41.512695, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 9929 28 100.0 33 ............................ CCCACCGCCACCCCCAGGCAGATCTACTACATC 9990 28 100.0 33 ............................ CCGGTCATGCAGCACCAGCGATCCGGCCACCGA 10051 28 100.0 33 ............................ CGAGATGGCCGAGGATCGCTCCACCGAAACCGA 10112 28 100.0 33 ............................ CCACACCATCAGATCCGCGAGCGCGGTGGCCGT 10173 28 100.0 34 ............................ CCGTCAGGAGACCGCAGCATGACCGACCTGACCC 10235 28 100.0 33 ............................ CCCGGCAGGGTGACGCCGCTCCAGGTGCTCGAC 10296 27 96.4 33 ....................-....... CCGCCGCCGGTGCCCTACGCCGAGCTGAAGGTG 10356 28 100.0 33 ............................ CGACCGGGCGCAGGGGCGGATTGGTGGGTGTCG 10417 28 96.4 198 ..........T................. AAAGCTCTGTTCACCACCGACTGGCTGGACTGGCGATGCGGACAGGCGTCAGGACCAACTCGCCCGTGATCCATGATCTCTTGAAGGGCCGCCCGGCGAGAGCATCAGGCGCTCAATGGTTGTGAGCGCAGAATCGGTGGATGGAGAAGGGCGGCTGGACCGCGGCGGTACAGCGCCGCCGGCCGCCCGCCATTGCGG 10643 28 71.4 0 ...G..TG.....CG.TC..A....... | G [10670] ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 10 28 96.4 52 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCTCGGGCGGAACCTCCTACAGCGACGAGGATGTCCCGTGGTAGTGCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAGCCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCGGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCCCGTCGGTGCCCGTGATCTTACGATGAAAGTTACGTTGATCCAACGGCTTTCCCCAGACGATCTCGTACACACGGCGTAGTTCCGCTACCGTGAACTCCGGCCTGCAGAAGCGGGTTGCGAGAGTGGTGTACTCGAGCTTGCTCCGAGCGCGTTCGACCGCGTCGGCGACGATTCGCCCGTGATCGAAGGCCAGTTCGGTCCGCTCGTTCAACACCCGCTCCACGGGCGTCCAGGTGGCCGAATGCGCGTCCCCGCCTGCTTCGGGCGCGGGGAGGTCTGGCACCAGTGCCAGGTAGCACACCGTTACGACGCGCCGTCGCGGATCGCGGTTCGGTGAGCCGTAGGTCTTCAGCTGTTCCAAATGCGCGCGATCGAGGTCTAATCCGGTCTCCTCAGCCAGTTCTCGTTCTGCGGCGGCGTCCAGGTCCTCGCGGTCGTTGTCGAGGAAGCCTCCCGGTAGGGCGAGGAAGCCCTGCCATGGTGGGATCCCCCGTTCC # Questionable array : NO Score: 4.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-1.86, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 126249-127068 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRP010000010.1 Nocardia farcinica strain N-25 NODE_13_length_211584_cov_41.512695, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126249 29 96.6 32 ..............T.............. GACCCGGACGCGATCACCGATTCGGCGTTGCC 126310 29 100.0 32 ............................. AGTGTGCAACAGTGGCCGCTTGGCTACAGTGC 126371 29 100.0 32 ............................. CCCTGCACACCCAACCCGAAGCGGACCGGGTC 126432 29 100.0 32 ............................. GGCAACCATGATGAGGGCCAGCGATTCATGAC 126493 29 100.0 32 ............................. GGGAGAAACGCCCGCAATAGTGGCGGCGCTTC 126554 29 100.0 32 ............................. TGCGAGACGTCGGTCCAGGTGGTGCCCATTAG 126615 29 100.0 32 ............................. GCGTGGCTAGGGGTGTCACACGTCGCCAGCGG 126676 29 100.0 32 ............................. ATCTCCACGACGGCGGGCACGTTCTCGATCGT 126737 29 96.6 32 A............................ ACCGCTGACGGCCCTGACATCGGCGACAGCCC 126798 29 96.6 32 ..............T.............. AGCGGGATCAACGGCGCGACTGCGGTGACCAG 126859 29 93.1 32 ..............T.............G TACTGGGATGAGGTCCAGCGCCGCCAGGTCGA 126920 29 96.6 32 ..............T.............. CCGGTACCGCCGCCGCCACCCCCGCCCCCGCC 126981 29 93.1 32 ..............T...........T.. GACGACAACAACCTATGGGTGCTGTGCGGCAG 127042 27 86.2 0 ............--.........A.T... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.1 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCAGCGCTGGCAATGGTCGGCGCGCTGCTGGGCACCGCGGGACGGACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGTTGCCTTCGTGCGTCTAGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTCGGTTGTGGGAACCTGTGCGGAGGTTCACGCGGGACGACGGAGATGTGGTGTATCCGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGAGGTATTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CGCGACTTGGTCGCGTTCGGGCTGGGCGAGGTCGTACCCCCGCGCACGCGGAACCGCCTTCTTCGGTCGGCGCGGCAACCGCACCAACCGCCCGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCGGCGTCCCGCGTCCTCGACCCTCGGGTGCGCACAACTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCATGCGCAGTGAACCTCCCAGTCGAAGGCCGCGCGGCGCCGCCCCTTCGCATTCCTAGACGTC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : GTGCTCCCCGCGCATGCGGGGATGAGCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //