Array 1 11704-12390 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKEZ010000167.1 Bacillus thuringiensis strain SY49-1 Scaffold31_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 11704 32 100.0 34 ................................ ACAAGATACGAGAATTTAATGACGTCACCCACAT 11770 32 100.0 34 ................................ TATTGTTACACCTTTAGAGTATCCGAGTAAAAAA 11836 32 100.0 35 ................................ ACAATGGGAAAGTGTTAGGTTATGCACGTTTTAAA 11903 32 96.9 32 .......................A........ GAAGATAGTAGAAGAAATCAAAAAAAGTGTAT 11967 32 87.5 33 .........T.A.......T...A........ TTTGTTGCTCCAGTCGTTATGATCGTCTTTGCA 12032 32 93.8 33 .......T.T...................... TAGGAGTTATTAATGGCTTTAGATGTTAGACCA 12097 32 90.6 34 .........T.........T.A.......... TACCTCGGGTTTATATTTATCTGGAATGCCCATA 12163 32 93.8 33 ........CT...................... TTTGCAACTAGCTCAATTGTTTTTCCGTTTTCA 12228 32 96.9 34 ....................A........... TACCTCGGGTTTATATTTATCTGGAACGCTCATA 12294 32 90.6 33 .........T.A.......T............ ATAATATCACAATTTTGACAAAATTCAGTCATG 12359 32 90.6 0 A.T.................T........... | ========== ====== ====== ====== ================================ =================================== ================== 11 32 94.6 34 GTCGCACCTCATATAGGTGCGTGGATTGAAAT # Left flank : ATTGAAAATGGAGAAACAGAGAATTTATATCCAGGGATTAATAAACAAGGAATAAGAACATTTTACACGAAACATTCTACAGATGTTGAGAATGAGGTTGCTACTGCGATTCATGTGTACGTTGATGTATTAAAACAAATGAAGCGTGAAGGTGCTGAATTAGCAAGGAAGAAGTAGAACGATGTGATTAGAAGATTTAATAAATAAAATTCTTCATCATATTATAAAACTATACATTCTTGTTTATTAGTTAGCTAATAGCTATGAAAATAAAATTAAATATATCGGTGTACAAGAATGAATTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAATGTATAGCAAACATGAAATTCCTAGTACATTCGCACCTAGAATTCTCATAATGTATGATGGGGATTTATGATTTTTATACAAAATACTTTAATAAATAAAAATATTTTTATATTTTTGAATAGAATTAACGTATTTGTGATTGATTTTGAGCACAAATCGGT # Right flank : TAGTTTAGTAGATACTCAACTAGAAGTATCTATATCTGCAGTATCTAATACAAAAGTAAACAGTATAAAATGGAGGGAGATTGAATGACCTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAAGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCCGGTATGCTCCATGATATGGGGAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAAGGGGAGTGTTGACCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATGATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCTATTATTTCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCCTATTTAAATAGAGTGCGAGATAAGCAATT # Questionable array : NO Score: 8.44 # Score Detail : 1:0, 2:3, 3:3, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5279-5562 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKEZ010000331.1 Bacillus thuringiensis strain SY49-1 Scaffold80_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================= =================================== ================== 5279 45 95.6 34 ..............C................C............. TACTGCTCTTTCTTTTCCCTATTTCTTCTTCCTA 5358 45 100.0 35 ............................................. GGTTGCTCCTTCTCTTCCTTATTTCTACCTACTTG 5438 45 100.0 35 ............................................. GGTTGCTCTTCCTCTTACCTATTTCTTCTTACTTA 5518 45 91.1 0 ....C.............T..G...........T........... | ========== ====== ====== ====== ============================================= =================================== ================== 4 45 96.7 35 CATTTCTTTTGCGCTTTGCTTTCCTTAACTCTTCAACTTGCAACA # Left flank : ATTTTGGAATTCTTTGTCTATAAATCCTTCAATTTCTTTATATATTTCTTCCTTATAGGAATCAATTTTGGCATAAATTTGTACTAATGTAGTACCGGATTCTTGTTTTTTCTCTAGCCAAGACACTAATGCAGTAAATGATGGGGAAGCATGAGGTGATGTGAGTACTTTATTATTATTGTTTTCAACATCTTTAAAATATGCATTCCACTTATTCCATACTAGCTCGTTAGTTTTATAAATTGGCTCAGAGATTAACAATGCATCTCGAAACATTTGTAATAAGTTATCCACTTTCTTTTCCTCCCTAAACCATGGATCACAATTAAATAATTCTCAGTATAAAAATCTTAACTACTATTATATTTAATTTATTGTAACAGATATTTACAAATTTTTGTTTCTTTCTTCTCTATTCTGCTTTTCTTGCATTCCTTTTGCAACTTTCTTTTCTGAACTTGCAACATGCTGCTCTTTCTTTTCCCTATTTCTTCTTCCTA # Right flank : GGTTGTTCTTCCTCTTACCTATTTTCCTTTACTGACATCCTTTTTGCGCTTT # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATTTCTTTTGCGCTTTGCTTTCCTTAACTCTTCAACTTGCAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //