Array 1 3425-4203 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJUP010000013.1 Planktothrix sp. FACHB-1355 contig13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 3425 37 100.0 36 ..................................... ATTGAATTACCGTTATCGTTATTGAGAAATTTTAAA 3498 37 100.0 41 ..................................... ACTGACAAAGATGCGGAAATTGCCAATTTAAAAAGTTTGTT 3576 37 100.0 39 ..................................... TAGAATACCGTGCGAGATTTGTCACCAATATTGGTGTCT 3652 37 100.0 36 ..................................... ACTTGGATCGAAGTCGATGTTCCAAACTGGTTTTAT 3725 37 100.0 40 ..................................... GGATTGAAAGAAATTATCAAAAACTTGTAGCACAAAGGAG 3802 37 100.0 35 ..................................... CAAAGTGAAACTTGTTGACAGCGGGCAAGAACTGA 3874 37 100.0 37 ..................................... AGCAAGGCAGTGCGCTCACAAATGGCATAAAAACTCG 3948 37 100.0 36 ..................................... ACTAAATAAAAGCGATTTCGACACAATGCCGTAGCG 4021 37 100.0 35 ..................................... GAACATATGGAAATTCCCATGCCTACGGAAGGTAG 4093 37 100.0 37 ..................................... CCTCAAAGCCGTATGTCGGACGATCGCGCCTAAAATG 4167 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ========================================= ================== 11 37 99.8 37 GTTACACCGTACCTAAAAGGTGCGGCTCCATTGAAGC # Left flank : CACAACCTTTACATCACTTTTTACCAACTCTTTGTTGAATTTAGAGAAACTTGGGCAGTAGTTGTTCAAGGAGTGCGCCGCAGGCAGTAATAGCACAGTATATTTATCCTTGGTGTGTTGTAGCACACTTTTTGCTCTTCTTGCATTCTTCGAGGGTTTGCGTTTCCTATGTGGCGAGATTCTCAGCCGACATCTCATAGGCTGATGCACCCTCACTAATTTTCTATAGATATTTTCACATCCGGGCGTCTATTGACGCCCACCTACTTACCTATTTATGATAGCGATGTCAGTTAGATTTTCGTAAACCAAAGTGGGGGTAAAAACTCTGGGGAGTTCACGAAAATTGCTAGAACCTTGACAAATCAATAATTACAGCTTTCAGATGACTTTACTTATTGCATATTCTTAGCAGTAAGCACGGCTGGAAATATCTTGAAAATTAGATTGCCGAAAAATCACTTTAAAACCCTTGATTTATTTGGGTTTTGATTGACAGG # Right flank : AAACAGAAACGATATCAGCCGGTACAAACAACCCCAAGCCAAAGTGAGCCGCATAGCCAAGCGCGATCGGCCCAGCTTGTAGTTCGGCCAACTCAATTTCTAACCAGTAACCACGATCGGACTCTTTTTTCCCATTACCTTGGTAGCGCCGACGTTGAAACGCTTGCCAGTTATAGCCGCTGAACTTTCTCCCCGCTTCCTCACTCAGGCATCTTGCCTTTACCAAAAGCTTGCCATCATCCCGTTGATAACCCAACCAATCTGCTGGATCGCCCGCACATTGAATCTCAACACATTCATCCAAAGATAGCTCTTGATTCAAATGGTTGAGCAAGTGTTTTAACAAACGCAGCGTTTGATGTTCTGGGCCATCAATTTGGAAAGATGTCCCAGGAATATATTTGGGTTGACCTCGGCGATCGCGTTTTGGATGACGGGGCAGCAGTAGCGGCGTTAGACTTTGCCATCTGCGACTTTTCCCCACCAAATTCGAGCAACCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACACCGTACCTAAAAGGTGCGGCTCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.00,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 35-1008 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJUP010000369.1 Planktothrix sp. FACHB-1355 contig369, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 35 37 100.0 34 ..................................... GTCGCGATTCGAGACAGTATGAGCCAAGCAACAA 106 37 100.0 34 ..................................... GTTGTCAGGGAATTGATTAAATTAGAATACTCTG 177 37 100.0 35 ..................................... CTGTAGAAATCCCGGTTCGAGCGGCAGAACCCATG 249 37 100.0 35 ..................................... CGCCTCGTATGGGAATGCAAATTCCGCATCATCGC 321 37 100.0 35 ..................................... GCTATTTACTGATTCGCTTCCCCACCAATCCATAT 393 37 100.0 38 ..................................... GAATACTACAAAGCAATCTCCCTTGTGATATCGAAGAA 468 37 100.0 34 ..................................... GCAATGTATGCAATTCATAAAAACTTCGCTATTT 539 37 100.0 39 ..................................... GTCGCCGGATTCAACGCTGTGATGGGTGCAGCCAAGATT 615 37 100.0 31 ..................................... TAAGGCTTCTACGGTTCGTTTTCCCCAGTCG 683 37 100.0 32 ..................................... AAGCTCTGACGAAACAGTCACAAATTCAGCAG 752 37 100.0 35 ..................................... TCTTTATATTCTATAATTAATTTGCAAATCTCTTG 824 37 100.0 34 ..................................... TTTAGCTTGTGAAATCTCTCGCCTGGTTTGCAAA 895 37 100.0 40 ..................................... GTGCTTCATCCTCAATGACTGGAATTAACAAATCTTTGAC 972 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ======================================== ================== 14 37 99.8 35 ATTTCAAACCACCAAAATCCCTTTCAGGGATTGAAAC # Left flank : AAACTTCATACTGTCTGGGTTTGAGGATGTTGCCA # Right flank : CATTCACACAGAGACAAAGAAGATTTTCGTTGCAGAATCATTTCAAACCACTAATATCATGTCCGGTGCATCGGTAATGTCAGACTGATGCTCAAGATTATCTGTGAGAATCTGGGGTTAAATTTTTACCGCAGATGAAGAGAGATGAACGCAGATAAACGCAGATAAAGGCAAATAGAAAGGCATTTTTTGGCAATCGATGCTACGGGATATGAGATGAAACAAACAGAAAGATACCAAAAAAAAGAGGGAAAAGAGCATTTCCCTTTTCCCTCTGTCACTACCCAATACCAAAAACAAGCTATTCTTTATCCAAACGCAAAACAGCCATAAAAGCTTCTTGGGGTACATCTACAGTACCGATCGCTTTCATGCGCTTTTTACCTTTGGCTTGTTTTTGCAACAGTTTCTTCTTCCGCGAAATGTCGCCGCCGTAGCATTTTGCCAACACATCTTTTCGCAATGCGGGGATATGTTCGCTGGCAATAATTTTACTGCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAAACCACCAAAATCCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 61-463 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJUP010000560.1 Planktothrix sp. FACHB-1355 contig560, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 61 37 100.0 38 ..................................... ATATGATTCGATTTTACATATTAAAGAGTCCATTGTCT 136 37 100.0 37 ..................................... GTTTAACTAACTGATCGTAGTTGTTAACGGGGGGGAT 210 37 100.0 34 ..................................... CGGCCTCTTTGAATTTCCCTTATGCCACCTCGCG 281 37 100.0 37 ..................................... TTTGATTTCCTCAAGCAGAGCTTCGATTCGATCGAGG 355 37 100.0 35 ..................................... AACCCGCCAGCAGAAAAGATTTCCATCCTGCTAGA 427 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 100.0 36 CTTTCAATTAACAGAATCCCGGCAACGGGATTGAAAC # Left flank : AATCCCGGCAACGGGATTGAAACTGGATCGGAGGGGTCTTTAGTCGCGGCCATTAAATTCC # Right flank : CAATTAGTGATTTCTGCACCCGTCTATCGGGAATCATCGTTTCCATTGCTGCAAAATGTACTCGTAGAAGCGTTCCGTATCGACTTTTTCCATCGCCTTAATTAAGCGTCCACCCGGCTCAACTTTAGTGCGACCCTGGCTGAGTCCACTGGTGACAATAACTGTTTCCCATTCGCGCAGTTGGTAAAACTCAGGATGTGCCAAATAAGCTGTCGCCAAAACATCCCAAAAATAAAAATCCTGGGGAATAACTAGCGCGTAACATTGTCCTGCTAAATCGGAAAGCGGATAGCGACGCTGTTTGCCAATTCGTTGCACAAATGCCGATGTTACTGGCACATTGTTGGTAACATCTAAAGAGCAAAGTACGATCGGAATGTTCGTTTGCCAAACTCTCTCTACAGCTATGGGGTCCCAGTAAGCGTTCCATTCCGCCGAACCGTCTTGTCCCGCTTCCAAAGAACGCTCTACATTACCGGGAACGTTAAGTGCGCCTCCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAATTAACAGAATCCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //