Array 1 3871-3658 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPCO01000076.1 Levilactobacillus brevis isolate HF01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3870 29 100.0 32 ............................. GACTATGGAACCGGGGTTGAGGTTAACTTAAA 3809 29 100.0 32 ............................. CATCATTCCGTGCTTCATGGTGTAGCCTCCTA 3748 29 96.6 33 ............................C CAATCAAAAATGGCCGTCAATCCGTCTGTATCC 3686 29 82.8 0 .............A....A......A.GG | ========== ====== ====== ====== ============================= ================================= ================== 4 29 94.9 33 GTATTCCCCACATGTGTGGGGGTGATCCT # Left flank : ATGATTTTAATGCGATGGGAGCGGCCTTTTGCCAGGCCCATCCGGAGCAGGTCGTCCAACAGCCGCTAGGTCAGCACCATCAGGCCAGGGCGATAGGGATGCGGGCGCTGGTCGACTTTGCGCGAGAGTATTATCGAGAAAAAGATCGACGCGAGATGAGCTAAAAAGTACAAGATATAAAAGCGTAGTTGTTAACCGCGGTGAACGGAGTAGCGGCTACGTTTTATTGTATTATATAGTCTTCTATCCTTTGATAGTGTCAAAAGGTAGTCACGGTACTTTGGAACAGGCTAGTGATTTGGTGGCCTGGCTACGTAGATTAAGCAACTGGATCGTTACTAGCAATCTAAGTCGAAATTACTTACAAAAGTAAGGCCACAAATTCCAGTTGGATAGATGATTGTTAATCAAGTATGAGTAGGGTATGCTTTAATAGTCAAAGTGATAAAATTTGCTGTTTTCTCTAAACGAAAATGCTGGTATATCAAGGATTCTTTAGT # Right flank : AGACGTTTCAAAAATGATTGTAATGCTGCGCTTAAATCAAAATAGACTTTTTATGGAAAGATAGTTGATAGAGCAGACCACCCAAGTACTAGCAGGCCATGGTGATGGGATACAGGTGTTGATTGATTTTGCACGAGGACATTATCAAAAAAAGGATCGGCGTGAGATGAACTCATCGAGGAGTTTATCGGGTATTCAGGCACGGGGACCGTATAAATGAGGCTAACTGTCAAGAAGTAAAGTGCTGGTGGTTGACAAAGTTAATGGCTCGCGTTATATTAATAATCGAACGATCGATCTTTTAAAAGGAGCCAATCATGCGAGAAAAAGATACGGCAAAACAAACGAGTATTATTGATGAGGTCAGTAATATTATTTTAAACGAGGGAATTGCAGCAGTTTCAATGTCCAAGATTGCTAAAGCAAGTGGCATTTCTTCATCAACGATTTACGTGTACTTTACGGATAAGGAAGATGTGTTGAAACAAGTTTATTTAGCA # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1198-2949 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPCO01000089.1 Levilactobacillus brevis isolate HF01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1198 36 100.0 30 .................................... AAGAGAATAACCAGCCTAAAAGGTATTATG 1264 36 100.0 30 .................................... AGAACAAAAAACACTTAACCGTAGGAGGTT 1330 36 100.0 30 .................................... CATCTTGATAGGGAAACACAAATGCCAAAG 1396 36 100.0 30 .................................... GGAAGAAGAACGCAAGGCTAAAGAAATTGC 1462 36 100.0 30 .................................... GCAATAGCTCATCTGATCCCATAGTGTCCT 1528 36 100.0 30 .................................... AGGTGTTCAAGTTTTAAAAGAAGCACCTTT 1594 36 100.0 30 .................................... CCCAGCAACAATGTAATAACCAATTAAACT 1660 36 100.0 30 .................................... CCCCCTTTAGTTTCGATAGTGTACGTAGTA 1726 36 100.0 30 .................................... GCCGGGATAAAAATATACAAGCTAAAACTC 1792 36 100.0 30 .................................... TAACGCGAACTCCAATGTCGGCTCTCGCCT 1858 36 100.0 30 .................................... TTATAAGGATTAGGCTTAACACCATCATCG 1924 36 100.0 30 .................................... GTTCTTTAGATTGGTTCTTCCATAGTAAAT 1990 36 100.0 30 .................................... CAAGACACGACCTAACACACACAACACACA 2056 36 100.0 30 .................................... TAGACTATGAGAATAATAGTATTGAATATA 2122 36 100.0 30 .................................... CTGTGTCAATGTCTGATGCAATGAAAGCGC 2188 36 100.0 30 .................................... AATTAGCACGGTGACGAACTCCTTATTAAA 2254 36 100.0 30 .................................... ATGTAACCGTCATGTTTTTCGAGACTTTCC 2320 36 100.0 30 .................................... CAGAACAAAAGAACTTAACCTTAGGAGGTT 2386 36 100.0 30 .................................... GTAGCTCCCCACACGTATTTGTGCCCCTTA 2452 36 100.0 30 .................................... TCCAAAAATTTTATATAGCATGTTATGCCT 2518 36 100.0 30 .................................... TCAATAGCTCATCTGTTCCTAGTGCTTCCT 2584 36 100.0 30 .................................... CAAGGATTCCGATAACTCCGCTGACTCCCA 2650 36 100.0 30 .................................... GCTTCTTGACGTTATTGAACATACCTTTGG 2716 36 100.0 30 .................................... TGATTCTACTTGTCATTGGTTATCGCTCTC 2782 36 100.0 30 .................................... ATTTTTGATTTTTGTTTATGTTATATATAC 2848 36 100.0 30 .................................... TTGATACGAACCCATGGTGCATTGATAACG 2914 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 100.0 30 GTTTTAGAAGGATGTTAAATCAATAAGGTTAAGCCC # Left flank : CAGTGACGGTTTGAGTGAAAAGTACAGTTCGGGCATTTACAAGCAACTTGAAGCTGTATTGGCTGACGATCAGCGAAAATCAATCACAGACATCAATAGCCAGCTGTACACCCTTGTGCAGCAATGCTTATTCATGATTGACCTACCTTTGGAAGTCACCTACGACTGGGATTTGAAGAAGCTGTTCAAATATTGCAGAATTCACTTTAATGCTGATACCATGAAGAACCCATATGCTATAATTGAATCAACTATTAAAATTCATTTGGAATGTGGATTGAAGTCTGCCGTTGGATTAACTAATGTCGCTCATTATCTTAATCAGCAGCAATTAACTGACTTATCCAAGCTCACAAGTTCTACGGGAATTTCGACATTATTAGTAGAGTTCACAGATATGAAGTCACAGGAGTTTTATACCAATTGCGATTTCTACTACATTGACGAGGACTTTGTTGATTGGCATTTATAACACATTAAAACTTGGTTATAAAAAATCG # Right flank : CAAAATTTTGGTTTTTAATACGCCAGATTGTAAAATTAATTTGAACGTTTTTTGGGATAAAGAAGCGTAGTTTCCTTTAAAATGGTGCGCGATACAAGCCCAATTTTAAGGAGCTGTTTTTAAACAAGGTGTACCCTAAATGGACAAAAAGCAGTATAATCAACTTATGAAGAAAAGCTTAGATTCTGCTTGGGATAACAAGCAGTTCTTTGTTTTTGTCAAACTGTCTAATTAGAGTGTCTAAACAGAATGCAGTAGGGTGGGGGAGACTGATCCTCTGAAAGGAGAGTTATTGATGAAAGTTGGTTATGCGCGAGTTAGTTCAACTGATCAAAATTTGGCCCGCCAAATTGAAGCCTTGAAAGTGGCCAGATGTGAGAAAATCTTTGAAGAAAAACAATCGGGCAAATCGACCCAGAACCGACCAGAATTACAGGCGGCAATTGCTTATGTGCGGCAAGGAGATACATTAGTGGTGGCCTCATTGGATCGGCTTAGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGATGTTAAATCAATAAGGTTAAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 8295-8627 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPCO01000188.1 Levilactobacillus brevis isolate HF01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8295 29 100.0 32 ............................. AAACACTCCTTAGTCTGAGATGCACTTTTTAA 8356 29 100.0 32 ............................. GGCCGGGTACTCTCTGCTGGTCAATCCAGAAA 8417 29 96.6 32 ............................C TAGCGGCGTAGCCACCCCGTTTTCTTCGACGG 8478 29 100.0 32 ............................. TGCATGGGAAGTGGCTCAACGGGTGTCAGTTG 8539 29 100.0 32 ............................. TGACGTAGCCCAACGACTGCTTGATTTTAAGC 8600 28 79.3 0 ....A.................-C..TTC | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.0 32 GTATTCCCCACAGGTGTGGGGGTGATCCT # Left flank : GGCACAAAAAGAATTGGCGGAGCGCTTAAATTTGACGGCGCAGTCAACCGCGGAATTCGTTCGGAAATTGGAAAAAAAGGGATTCGTGACACGAATGAAATCTCCTACGGACCGGCGAGTTACCGTGGTGAGTATCACGGATGCTGGGCGCAAGGAAACAACGAAAAATGTGCAACAAATCCCGCCATTCTTAACGATTTTAGATGATACGGAGTTGGATCAACTCGCGCATATTTTAGATAAGGTTAATCAGCATATGTATGAAGAAGTTAATGCCGCTAACCCAACCTGGTTCAACAAGTTCCATCAGGTCATTATGAATCGTATGTTATCGCAATTACATTCAGGCGAAGATCGGTAGGCTTGGTGTCAGTTTCGGCGATATTTATGGGGGCTGGTTTATTTGTTAGACAACCATGACGACCTGCACTCAGAAGCAAAGTGATGAGAATCGCGGTATTGCTAAAATGAGAATGCCGGTATAATAGGTTTTCTTTAGT # Right flank : CCGCTACTTCCATAAACTACTAGTATTAGCGGAAGTAGCGCTGTCACAAGCAAAGAACCACCACAACTTGCAAGGTAATCAGGCTCAAAAACCACCGCACAATCATCAGCCATTTGGCCTAACAATTGTGCGGTGGTTTGTAGTGTCGAGATTATTTTTAATTAAGCGGCATTTAAAATCCACAAGAACAAGACGAAGACAACCGCCAGCCCGTACATCATAGCACCGACTTCCTTACCACGCTTAGCAGCCAACATGGTCAAAGGATAGGTGATGAAACCTAGTGCGATCCCATCGGAGATGCTGTAGGTTAAAGGCATTCCCAGCACAATCAGAAAGGCCGGAGCAGCTACTTCGAATTTTTCCCAATGAATGTTCTTTAGGGATTGGGCCATTAGCACCCCAACGATAATCAAAGCGGGGGCGGTGACTTGATCCGTCACAACTGCCAACAATGGAGAGAAGAACGCGCCAAAGATGAAGAGTATCCCAGTGACGAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //