Array 1 1-395 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXV010000033.1 Erwinia amylovora strain 1482 Ea_1482_contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 62 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 123 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 184 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 245 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 306 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 367 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.6 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : | # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9859-10187 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXV010000033.1 Erwinia amylovora strain 1482 Ea_1482_contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9859 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 9919 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 9979 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 10039 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 10099 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 10160 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-1189 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXV010000045.1 Erwinia amylovora strain 1482 Ea_1482_contig_45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 62 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 123 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 184 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 245 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 306 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 367 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 428 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 489 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 550 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 612 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 673 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 734 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 795 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 856 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 917 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 978 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 1039 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 1101 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 1162 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.7 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 178808-184722 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXV010000024.1 Erwinia amylovora strain 1482 Ea_1482_contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 178808 29 100.0 32 ............................. CCAGATGTGGACCTGAACTCTGGTAGTCACCA 178869 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 178930 29 100.0 32 ............................. TTTTTGTACTGTGAGAAAACGCTGTCAGAGGA 178991 29 100.0 32 ............................. CCAGTTAGGATGTCTCTTTCATGATTTATATA 179052 29 100.0 32 ............................. CCCGAGCCCATGTGCTAGTGCCGGTAAGAAAA 179113 29 100.0 32 ............................. GCGTCCTGGCCATCGAGTGCGTATATCCATGT 179174 29 100.0 32 ............................. CAACCAGTTTCGTTAGTTGTTTCTGGGATTAA 179235 29 100.0 32 ............................. GTTGAAAATTGACCATTACAAGAAATTTAAAA 179296 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 179357 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 179418 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 179479 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 179540 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 179601 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 179662 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 179723 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 179784 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 179845 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 179906 29 100.0 32 ............................. CATAACGCTTCTTTTCTTTGGTTCTTCTGTCA 179967 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 180028 29 100.0 32 ............................. CGAACCTATGCGGCATTAGCGGATGCCGCCGG 180089 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 180150 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 180211 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 180272 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 180333 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 180394 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 180455 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 180516 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 180577 29 100.0 32 ............................. GGCACCGCCAATCTTCTGGCCCCAGTGATTAT 180638 29 100.0 32 ............................. GAGATAGCTAACATACTTAACTTATCGCCTAA 180699 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 180760 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 180821 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 180882 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 180943 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 181004 29 100.0 32 ............................. CCGCAGTGGTGTTGTGGTTCTTAGCAGGCCGA 181065 29 100.0 32 ............................. GGTGAGTGTTTAATACTTCCCCTTTGGAGGCA 181126 29 100.0 31 ............................. ACAAAAGACAACACCCCCTTACCCCCCCACG 181186 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 181247 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 181308 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 181369 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 181430 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 181491 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 181552 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 181613 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 181674 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 181735 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 181796 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 181857 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 181918 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 181979 29 100.0 32 ............................. AGCCTGAATTGCCGGAGATATCTGATGTTGAC 182040 29 100.0 32 ............................. CGCTGAAATGTGAATCAGTGCGGTATTTAGCC 182101 29 100.0 32 ............................. CTCAATCAGGGGACTGATTCCGCGTTAATAAC 182162 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 182223 29 100.0 32 ............................. TCGGGTATAGTTCATCTCCCATTTTCCAACTA 182284 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 182345 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 182406 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 182467 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 182528 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 182589 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 182650 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 182711 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 182772 29 100.0 32 ............................. GCGGGTCATCTTCAGCTGATGACGCTGATACT 182833 29 100.0 32 ............................. TAGAGGTAGATGGAACATCTATTAAAATCTTC 182894 29 100.0 32 ............................. CGTATTGATCAGATACTTACACTTGGCCAGAT 182955 29 100.0 32 ............................. TCATCGCTGATACCTGTTCAGTAGTTAAAACA 183016 29 96.6 32 .......................G..... GCCAGTGCTATCAGCAGGAGATACGGAACCCC 183077 29 100.0 32 ............................. ATGCAACGTCAGCCCAGTCAAAAGAAATAGGA 183138 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 183199 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 183260 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 183321 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 183382 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 183443 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 183504 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 183565 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 183626 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 183687 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 183748 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 183809 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 183870 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 183931 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 183992 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 184053 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 184114 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 184175 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 184267 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 184328 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 184389 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 184450 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 184511 29 93.1 32 .C...............A........... AGCTCGAATGCTACGCATCAGCACTGATTAAA 184572 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 184633 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 184694 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 97 29 99.5 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //