Array 1 29697-29019 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NUEJ01000002.1 Bacillus pseudomycoides strain AFS004741 AFS004741_98_C6_Contig2_140514, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
     29696	    29	 100.0	    36	.............................	TCTTTACCAATTTCAATACCATATAAAGTTTGTTCT 	
     29631	    29	 100.0	    36	.............................	ACAGCAGCGAGCATTAGAGCGTCAAATAAAAAAAGC 	
     29566	    29	 100.0	    37	.............................	ATCAGTAATTGCAATCTTGTTCTTAAAAGATTACAAG	
     29500	    29	 100.0	    36	.............................	GAATATTGAACAAACAGGATAGAATACGATTTAATA 	
     29435	    29	 100.0	    36	.............................	TACTCGCTTTTTGAGTATGGACCAACAAATTACTCG 	
     29370	    29	 100.0	    36	.............................	TTCATCAAGGAAATCAAAGTAGGTCGGGTTTTAGCT 	
     29305	    29	 100.0	    36	.............................	GTCGCATTTTCGAATCAAGTTGAGATAAATGGAATT 	
     29240	    29	 100.0	    35	.............................	TTGACCTCAAGAGCGACTGAAATGTTAGGCTGAAG  	
     29176	    29	 100.0	    36	.............................	ACTGTATAGATATACTCTGTTGTTCCATCTCCGATG 	
     29111	    29	 100.0	    35	.............................	GTCAAAGGGCTGTCCGAAGTGGTACAAGCCGTATA  	
     29047	    29	  93.1	     0	.......................A.G...	|                                    	
==========	======	======	======	=============================	=====================================	==================
        11	    29	  99.4	    36	GTTTTATAAGAACTATATGGAATGTAAAT	                                     	       

# Left flank :   TTTATTGGAGAAGATGCTTACAAACCGTTAAAGGCATGGTGGTAATATGTTTGTAATTGTCTCATATGATGTGGAAGTAAAAAGGGTTAGTAAAGTTCATAAAGTATTGAAAAAATATTTACAGTGGACTCAAAATTCTGTATTTGAAGGAGAGATTACAGAAGGAAAGTTAAAAAAATGTATGCATGAAATTTCGGAGAAAATTAATCCAGCTTTTGATTCTGTCTATGTCTACAGAGTTGCTAATCCGAGGAATATTCGAAAAGATATCTATGGGTGTGAAAAAGATTTTGAAACGATGTTTTTATAAAGCTATTTTGCCGTAAAGCTCCTTTTGAACTTTATTTCGCTAAATGTTGATATATTTGATATGAAGAGAGTTTCTTAGAAGAATCTAAAGACACAACTATCACTTTACGGCAAAATGTTATAAAATAAATGTAAATAAAGTGACAAAAACCCTTGGTGTTTAAGGCTTTTTGTTCGATGAAAATATCAGG
# Right flank :  GGCTGAGGCGAAAATACTTTGTGTGAAGATTTTTCTATAAGGGGTCACCTTACATGCCCATCAACTTAAGAAGGAAAATAAAATGAACTTTCGTTCATATGAACGAAAAAAACTTAAAATATTTTGTGTCCTTAAAAATGAGCATACCAAATAAACCTAGATAGGTATCATTTTTAAAAATTATGCTGCTTTCTTTTGTTTTCCAAGTCCACTATACTCATAGACAACACCCATAATATCAAAGACTGTCTTTTTCTCATATCTATGAGATTTCCGTCCATTCTTCTCTAGGAGGTGGAATAGACGGATTAGAATCTTTGTCATTTCTATGGTGCTTTGTCGTATAGTTTGATATTTGTATGGCTATTTAATAGTCAGTTTTATTAATTATAAAAAGATATCAACTTAGTTTTACTTTATATAATTTAAACGTCCCAAAAAGCAAAGTTTCTGGGACATTTTTATTTATCAATATTATAGGTTCCAGATGTTCCTAAAGC

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTATAAGAACTATATGGAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:79.31%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [2-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,0.68   Confidence: HIGH] 

# Array family : NA
//