Array 1 109206-107955 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTP01000001.1 Salmonella enterica strain BCW_3311 NODE_1_length_449142_cov_3.75998, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 109205 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 109144 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 109083 29 100.0 32 ............................. AGGCGCAGGACGCGGCAGCGGCGGCGAAAGAA 109022 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 108961 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 108900 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 108839 29 96.6 32 .........T................... GCTACATAGTTGGTCTTCTTTTATCTCACTTC 108778 29 100.0 32 ............................. CAACCGAGCTTATCACGAAGCTAGGCGGCAAT 108717 29 100.0 32 ............................. TATGAGTATATTGATTTATTTGAGACTTCTGC 108656 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 108595 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 108534 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 108473 29 96.6 32 A............................ GGGTTTACTAGTATGAATACCCTGAATTTAAA 108412 29 100.0 32 ............................. CCCAACGAATCCATTTTTAAATGTCTTCGTAT 108351 29 100.0 32 ............................. TTAATCCCCACGGCCAGGAGGTATTGATCAAC 108290 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 108229 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 108167 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 108106 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 108045 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 107984 29 100.0 0 ............................. | A [107957] ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126653-125770 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTP01000001.1 Salmonella enterica strain BCW_3311 NODE_1_length_449142_cov_3.75998, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126652 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 126591 29 100.0 32 ............................. ATTGGAACAGCATGGGTTGTCTTTGGTTTCGC 126530 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 126469 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 126408 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 126347 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 126286 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 126224 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 126163 29 100.0 32 ............................. AAAACAACAAACACTGGAAAAATGGAAGGGGC 126102 29 100.0 32 ............................. TCGCGCGAGATTTATTTAAAGAGGGTAATTCA 126041 29 100.0 32 ............................. TCCAGGCTGAATAATTTCGGCGACGGCTTCGG 125980 29 100.0 32 ............................. CTGATAACATTCGGCGCGCTGGAAAATTCAAG 125919 29 100.0 32 ............................. TGGAATCAAGTTTTACTCGCTGGCTGAGGGCG 125858 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 125797 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //