Array 1 37-1529 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHVL010000072.1 Escherichia coli strain Survcare104 NODE_72_length_23026_cov_4.88825, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 98 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 159 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 220 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 281 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 342 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 403 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 464 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 525 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 586 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 647 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 708 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 769 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 830 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 891 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 952 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 1013 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 1074 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 1135 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 1196 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 1257 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 1318 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 1379 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 1440 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 1501 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 25 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACCGGAATACCGATTCATAACGGCGGAAATGTGGATG # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8754-9270 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHVL010000095.1 Escherichia coli strain Survcare104 NODE_95_length_9308_cov_4.85209, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8754 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 8815 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 8876 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 8937 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 8998 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 9059 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 9120 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 9181 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 9242 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : TTCTCCAATCAGCAGTGCCCATCTGATATGCAGTGTTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 311-160 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHVL010000015.1 Escherichia coli strain Survcare104 NODE_15_length_85201_cov_6.07797, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 310 29 100.0 32 ............................. AGATTTGTAGAAAAATAGTCATTCTCTGCCTG 249 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 188 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGGGTTATTTGTA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //