Array 1 2728130-2729626 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069587.1 Chromobacterium violaceum strain FDAARGOS_1273 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2728130 29 100.0 32 ............................. TCTTTCTTGCCCAAATCGCGCGCCCAGGACTC 2728191 29 100.0 32 ............................. CTGCACGAACTGGCTCGGCTGGCCGGCTGGGC 2728252 29 100.0 32 ............................. TTCGAGCCTGGAGAATCGTTTAACAATAACGG 2728313 29 100.0 32 ............................. GACGCGGCTGCGCGAGACCATGCCGGTCCTGG 2728374 29 100.0 32 ............................. TGATCCTGCAATCTGACCGGCAGGCCGCCGGG 2728435 29 100.0 32 ............................. TATTCGACTGTCATTGCGTGAATTTGAGTGAA 2728496 29 100.0 32 ............................. AGCTGGACGCCTCTGATTTTCATGCCGTATCC 2728557 29 100.0 32 ............................. TCCAACGTATCAACGCACAAGAGGCCGAAAAA 2728618 29 100.0 32 ............................. TTGGGCAGGGAAACTAATTTTTGAGGAGAAGT 2728679 29 100.0 32 ............................. TGTAAAGCGGAATTAAGCGTTAGTGGCTACAA 2728740 29 100.0 32 ............................. CCCCTGCGAGCCGCGCCAACGGCGATGACCAG 2728801 29 100.0 33 ............................. GTAAGCATCCTGTTCCAGCTCCAGCGCCAGGCT 2728863 29 100.0 33 ............................. GTAAGCATCCTGTTCCAGCTCCAGCGCCAGGCT 2728925 29 96.6 32 .........A................... GCTTCGGCCTTGGTCGGCGGCGACGGCCCGGT 2728986 29 96.6 32 .........A................... ATGGGGGGCCAACTCGGATAGCAGCCGGTTGG 2729047 29 96.6 32 .........A................... CCGCGCGCGCCACGCTGCTGGCGTATGCCGAG 2729108 29 96.6 33 .........A................... TACGGCGTCGAGTGTCCGCGGTGCAAGCAGTGC 2729170 29 96.6 32 .........A................... ATGGTGGAGGCGGTCGCCCTGAATCCATGGGT 2729231 29 96.6 32 .........A................... CCCTTCCGGGCCTTCCTCCTGCAGCACATCAT 2729292 29 96.6 32 .........A................... AAATAAGGACACCCCCACATGCGCCCGACTTC 2729353 29 96.6 33 .........A................... AACAGCGGCGGAGCCTGGCTGTCCCGAGCGCTG 2729415 29 93.1 32 .........AT.................. GTCAACGTGATGCCGGTACTGCTGGGGCGCGG 2729476 29 96.6 32 .........A................... CTGGCCGAGATTTCCGGCGTGCCGGTGACGGC 2729537 29 96.6 32 .........A................... CTCTGCGTCTCGATGTACTCGTAGTCGCCGTA 2729598 29 89.7 0 .........A...............G..A | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.0 32 GTGTTCCCCGCGCACGTGGGGATGAACCG # Left flank : TGCCCACGCCGGGCGGGCCCCACAATATCATCGAGTGCGGCTTGCCGGACGCCACCGCCAAGCTCAGCGGCTTGCCCGGGCCGATCAGATGCTGCTGGCCGATCACCTGGTCGAGCGCTTGCGGGCGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGGCATGGCGCGATTTTGGCGGGATGGGGTGGAGAAACAGTATACCAGTTGGGGACACGCATGAAAAAAGCGGCAGTCAGGCGCTTTTTGCTTGCATGTCGATGGAATGAAGGTACGCTATGGTTGCTGGCCTAGCGTAAGCCTTGCTGTTGCGGAAGCTTGGCGTTCAGCATCAGAGGCGAGCGGTGTCGGACCCTTGTGCAAGGGACGATTTGCCAAGGCCTGGCGGGGTTTGCCGTGCTGATTTGAACGCCGCTTCATGGCTGGGAAAATCGGTAGAATTTTAGATCGGATTTTTGTCTTTAAAAATCAGCAGCTTGAAAATGGT # Right flank : AAAGCCAGTGCCTCAAGGCTTGAGGGTTCGAGAATATTCCCCACGGTTGTGGGGGTGATTGACGGTGGACGGCTGGAGTGGTGTCGCGGCGCTGCCAGTCCGGCCGCGTCCGGCAACAAAAAAGCGCCCCGTGGGGCGCTTTTTTTCTGCACAACGAGTAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGATCACGGTGGTCGGCAATTCCACGGAGATGGCCTTGCCGTCGTAGAAGGTCACCTGGCACACGTCTTCCATGCCGTCGACGATGTAGTTGATAGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCACGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACGCACGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2736961-2737965 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069587.1 Chromobacterium violaceum strain FDAARGOS_1273 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2736961 29 100.0 32 ............................. CCGGCGACGATTGGGACAAGGTGCGCGCGGCG 2737022 29 100.0 32 ............................. TCGGATCTGCAGGACACCCCATCCCCGGCAGC 2737083 29 100.0 32 ............................. TACTAGCGTCTTGATTCGAATTTTTAGCAGCT 2737144 29 100.0 32 ............................. GCGGCATTGCCGCATGTGCGCTCGAACTCGAC 2737205 29 100.0 32 ............................. CCCCGCCAGGATCAAACCGGCGGGGCTGATTC 2737266 29 100.0 32 ............................. CCGCCGATCGCCAGCGCCGCTACGCCGATCGG 2737327 29 100.0 32 ............................. CGCCTGGGCAAGTCCTTCAAACGCTGGGCGAA 2737388 29 100.0 32 ............................. CCCCGCAAACGCGGGGCTTCGCATTCCAGGAG 2737449 29 100.0 33 ............................. AATTGATCGGCAGTATCGCCAGTGATGGAGAAC 2737511 29 100.0 32 ............................. TTCGAACGCCGCGCCACCGTCACCAAGCTGGG 2737572 29 100.0 32 ............................. GTGGCAGCCTTGGGGTGACTTGCAGGCTATCT 2737633 29 100.0 32 ............................. CTGGCACCTACCGCAGACGACCCGGACGAAGA 2737694 29 100.0 32 ............................. GTCAAAGGGGAACCCCGCCCCCCACATTCAGC 2737755 29 100.0 32 ............................. GCATCCAGGGCGAGTTCGGAGGGCCAGAGTTG 2737816 29 100.0 32 ............................. CTGCTCCACATCCTGCAACACTCGCGCGGCCT 2737877 28 96.6 32 ....................-........ CCAGGGGAAGGTGGCGAGACGCTGCCGGTCCA 2737937 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.8 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : CCTGCTGGCGCAATGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGCTTGCCGCAGCTGCAATGCGCCGACCGCGCCTTCCGCCCCTTGCACGAGCAACTGGCCACCCAGGCGCTCACCGGCTTTGCCTGGTTGAACGCCGAGCATACGCTGCAGCAAACCCGTTTCGCCGACGGCAGCCGGCTTACCGCCAACTTCGGCCCCGCGCCGGTCCGCTACGATAAGCAAACCCTGCCGCCGCAAAGCCTGCTGGCCGAGCTGGCCGGCCAGCCGCCCAGGCTGCTGCCAGTGGCGGATTGCGTCGACAAGTAAGCGGCGGCGATAATGCCGATGTCGTTTTGCCGGTCATGGCGCGGCGGTTTGCCATGGCCGGCGAGCGGCATTGCCGAGCGATCGAGATGGTGATTTTTTGAGCGGAAAAATCGGTAGATTTTTGGGGTGGGTTTTTATCTTTAAAAATCAGCATCTTGAAATTGGT # Right flank : GTTCATCTACTGGCAGTGATACGGGATTTCAAAAATATGGGGATTGAAGCGTGGGCGATGGTTGTGGGAATCGTCAGGCCAAACGGCAGGTACAACTCTCGACCCTGCAAGTCGCTGCCTAGAGAAGTTTCATGGCATGAGTTATGTCAATATTCTTATTGACCAAAATGACAATGTGCTTTTGGGCTGATAGCCTGCGCGCTTGGGTTGGTTCCAGTTGGCAGATCGGTTTTCACTGGGAGAGGCGATGCAGACAGAGTTGGACGGCAAAAAAGAGGTTCATGAACCCTCCAGTGTAACCGGACTAAGTTTTGATGATCTGCACCCCGCGGTCCGACAGCTATGGGCCAAAAGCGGTGACCCGACTGGCCATGGCCTGTTATGTCACATGCTGGACGTGGCTGCGGTGACCAGAGCTTTGCTCGACTACTGCGGGATTTCGGCCAAGGCGTTGGCGCTGCGTTTCGGCCTGCCCGAGTGTGCGGTGTTTCCATGGTTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2746741-2749029 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069587.1 Chromobacterium violaceum strain FDAARGOS_1273 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2746741 29 100.0 32 ............................. TTGCACGTTCTGGTTCGAAAACGATACATACA 2746802 29 100.0 32 ............................. CTGGTTCAGAAGCTATTACCGGCGGCGCTGGT 2746863 29 100.0 32 ............................. CTGTAGAAACTATAGCCGAAAGCACAAATGCC 2746924 29 100.0 32 ............................. GCATGGTGGAAGCCAAGCCCGGATAAGCGCCG 2746985 29 100.0 32 ............................. CCCTTACCAAGAGCGTGAGCTAGTGGCCTACA 2747046 29 100.0 32 ............................. ATTGTTGGTGGTAAGATGAAAGCGGAAGGAGT 2747107 29 100.0 32 ............................. TCGGCATTTATCTATAATTACTTGTGGACTTT 2747168 29 100.0 32 ............................. GGCTAATCAATCATGGCAAATAGTTTTTCGAA 2747229 29 100.0 32 ............................. AGCTTGGCAGATTGGAAAAAAAGAAGATAAGA 2747290 29 100.0 32 ............................. GAAAAATAACTTTGTTTGTAGGCGAATTGTCC 2747351 29 100.0 32 ............................. TTCGGCGATGCGATCGGTCTTGGCGTCGTAGT 2747412 29 100.0 32 ............................. GCGTTCCGCAAAACGCCTATGAGCGCGCGCTG 2747473 29 100.0 32 ............................. ATGGTACGGTGGTTGAATTTTGCGAGGTTGGC 2747534 29 100.0 32 ............................. CTGTCTTTCATGTGATCATTTTAGAGAAGATA 2747595 29 100.0 32 ............................. GCTTTATCGGTGATCCCGATTTCCTTTGCCAC 2747656 29 100.0 32 ............................. GAGCTGGCCATCCCCTGGCGCAGCATGAGCCA 2747717 29 100.0 32 ............................. TGCAGCTCACTGGCACGATTCGCGGGCTGGTC 2747778 29 100.0 32 ............................. CTCTACCTTATCTTGTTCTTCGAGCATCATAA 2747839 29 100.0 32 ............................. GCTACAAATACGAACTGCGGGAACTCTACACC 2747900 29 100.0 32 ............................. AAAACCGCACGGACGCAACCAGCGACGAAGCG 2747961 29 100.0 32 ............................. ATAATAAATTTGAATTAACTAGAGATTTTGAT 2748022 29 100.0 32 ............................. CCCGAAATGCGGAGCTTGCGGTGGTACTGGCC 2748083 29 100.0 32 ............................. TTGAACGCGCCCTCAGCCTCGCCGCTGAACAA 2748144 29 96.6 32 ............................A GGTCATCAGCATCGGAGCGCCTGACGTTACAG 2748205 29 100.0 32 ............................. TGCGCGGCCGCCAGGCTGTCATCGATGATGTC 2748266 29 100.0 32 ............................. CTGCGCGATGGCAAACCGCTGTTCCACCCGGA 2748327 29 100.0 32 ............................. CGGTCCAGCAGCGGGAGGCGGGTTTGCCAAGT 2748388 29 100.0 32 ............................. GCGTTGCGCGCGAGCTGCACATGATCCGCTAT 2748449 29 100.0 32 ............................. CTGCCGAGGCTGACTTGGCGCTTGATGATGAC 2748510 29 100.0 33 ............................. GAAGGGGGCGAAGCGTGAGCCAAAACAACGGAG 2748572 29 100.0 33 ............................. GTCATGCCCCAGTCGATGATGAACTGGGCGGGA 2748634 29 100.0 32 ............................. CTGTGGAGCAACTTCCATGAACGACAGACTCT 2748695 29 100.0 32 ............................. CCGCCAACGAGGCCGGCCGCAAACTCGCTGAG 2748756 29 100.0 32 ............................. ATTGAGCGCATCGGGCCGGCGCTGTGGGCGTT 2748817 29 100.0 32 ............................. GGCCACCCGCTGTTTGTCTCCGGCGAACTGCG 2748878 29 100.0 33 ............................. GATCGTCCGTCGAGTACACACGCACCGCAACAG 2748940 29 100.0 32 ............................. AGCGAATCATGGTCATGCAATACCGGCAATAC 2749001 29 79.3 0 ..........T.........A...TG.TC | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.4 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : CGGACATCGAAACCATGCTGGACGCCGGCGGCCTGGACAAGCCGGAGGCGCAGGGCGTGGTGGACGCGGCGTTTCCGGAAGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAGAACGCGCCGCCCCGGCTGCGCGGCCGGATGGCGATCTGGCTGCTGGAAATCCGCGCCGGCGTTTACGTGGGGAATTACAACCGCAAGATCCGCGATTACCTGTGGCAGCAGGTGGAAGAGGGGCTGGAAGACGGCAACGCGGTGATGGCTTGGCAGGCCGCCACCGAGGCCGGCTTCGACTTCGTCACCCTGGGCGCCAACCGCCGCATCCCGGCCGAGTTCGACGGCGCCAAATTGGTGTCTTTTTTGCCGCCGCCGGTGTCGGAAGCGGGGGGCGAATAGAGGGCGGGTGGGGTGTGGAGAAAGGTAGGTTTGGCTCTTTAAAAATCGGTAGATTTTTGAGTGGTGATTTTGTTTTGAAAAATCAGTTGCTTGCAGTTGGT # Right flank : CCTGCCCGTCTATCGCTTGCTTAATCCGCGGCCGTCGCGCTGCCCGATGCGCTTGCGATCGACGCGCCGCGGCTTGCCGTCCGAGGAGGGCGCTTCCTATGCTGCAAGAATCGATGTCAGAGGAATCGCCATGCAGCAGTTAAGAGTGAGTGTTCTGGTTGCCGCGCTGTTTCTCGTCGTCGCCGTGGTGTCCAAGACGCTGGCCAGCTCCGTCACGGAGACCGTGCCGGTGTGGCTGGGCAGCGGGGTGACTTTTTCCGCGTTGCTGATTTCTCCGCGCTGGCGCTGGCCGGCCATTCTCGCCGGCGTGTGGCTGGCGTCGGCGATATGGGGGATGTCCGCGCATGGCCTGGGGCTGGCCGGCGCGGCGGCGTTCGCGGGGATAGAGGTGGTCAGCGGAGCCGTCGGCTGCTGGGTGGCCGGACTGGGGCGCAACGATCCGGATTCCCCGATCGGCATGGCCTTGCTTCTTTGCGGCGCGGCGCTGGCGTCCTGCCTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //