Array 1 1725-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMKU01000005.1 Sphingomonas sp. Leaf25 contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================= ================== 1724 29 100.0 32 ............................. GGCGAGCCTTTCGAGGCGGCGGCCATTCTCGG 1663 29 100.0 32 ............................. GACGCCGCGCGCGGCGTCATGGTGGCGACGGC 1602 29 100.0 32 ............................. AGCAAGGATCACGGGCAGGACGCCGCAAGCGA 1541 29 100.0 32 ............................. GGACATAACCGCCATCACGCACAAAAAAAGAG 1480 29 100.0 32 ............................. TGCTGGGCTTGCCGGGGCGTAGTGACGGTGTG 1419 29 100.0 32 ............................. CTGCCAGCCAGAGCATCAGCTATCCTTCGGCT 1358 29 100.0 32 ............................. CGGGTGTCCAGTACATCGATCGACGCATGGGC 1297 29 100.0 87 ............................. AGCGTCCACCGATCCCCAAGCGCCTCGAAAGGNNNNNNNNNNNNNNNNNNNNCCTTCGCCAGATAGTCGGCGTCGTTTTCCGGCACA 1181 29 100.0 32 ............................. AGCGCCTATCGTGGACGGCGGCAAGCTGCCGC 1120 29 100.0 32 ............................. CTCCGCGTCGACCTTACGCCGGAAGTGCGCAG 1059 29 100.0 32 ............................. GCGAATTTCACCATTGCCGGATGATTGCCGAG 998 29 100.0 32 ............................. ATCTTCTGCATGGCGTCCGAATACCGCCGGCC 937 29 100.0 32 ............................. CGGATCGGCACATGCAGCGCATCAGCAGCGCC 876 29 100.0 32 ............................. CCTCCAGCTCGAACCGGCCGGTCTTGCGGATG 815 29 100.0 32 ............................. TCGACGTCATCACCACCCGCCATGGCGGGTTC 754 29 100.0 32 ............................. GATCTTCGAAGCGGTGAACGCTCACGACATTT 693 29 100.0 32 ............................. GACGTGACGCGGCCGGTCACGATGAGTCCGTT 632 29 100.0 32 ............................. TCGATTGCGGCTTGCCCGGTGCGCTTCCGCAT 571 29 100.0 32 ............................. CCAGCACGAAACCGCCGCTCAAGAACGCCGCC 510 29 100.0 32 ............................. AGCGCCATCGGTCCCATCGCCGCCGCGTAGCC 449 29 100.0 32 ............................. CGGGGATCGGAGAAGATCGAAAGAGCGCCGCC 388 29 100.0 32 ............................. TATCTTGGGCGCGCGCTGCCTGATGGCCTGCA 327 29 96.6 32 ............................G CGCGGCTGTTCACGAGGTACGGCGTCGAGACG 266 29 100.0 32 ............................. TATCAGCCGACGATCGACGATGCCGAAAAGTT 205 29 100.0 32 ............................. AACATCCATGGGCAGCTGCCTTTCTATCTCGG 144 29 96.6 32 ............................A TGGTCTGAACACAAGTGTCCTATGGCATGGAT 83 29 89.7 0 .......................T..AG. | ========== ====== ====== ====== ============================= ======================================================================================= ================== 27 29 99.4 34 GGCTCCCCCGCATGCGCGGGGATAGACCC # Left flank : CTGTTCACCCGTACCACCGACCTCGTCCAGCAACTCCAGACCGCCCGCCAGGAACTGCGCCTGGCGGCCGCCATCGAGAAGCTCGACAAATACCGCCTGCTCATCCTCGACGACCTATCCTACGTCCGGAAAAGCCAGGCCGAAACCTCCGTCCTCTTCGAACTGATCAGCGCCCGCTACGAGCGCCGCTCCATCCTCATCACCGCCAACCAGCCCTTCGGCGCATGGGACGACATCTTCCCCGACCCCGCCATGACCGTCGCGGCCATCGACCGCCTCGTCCACCACGCCATCATCCTCGAGATGAACACCGCCAGCTACCGGCAAAAAACCGCCCAGGCCCGCATCACCGACATCACCAGCAGCGCGGATCCATCACCTTCTAATTGACGCCGCGCGTCAATTAGCCGACCAACACATGCCCGCAGGCGCTCATCCTAATTGACGCGCTCCGCTGATCGTAATTGTCGCGCCATACTCGCCTGCATCAAGCTCTAATC # Right flank : CGTCCCGGGTTTCCTGGAGGCTCCCACTTGTGAGTAGGAGCATCGGTAATGAGCA # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCATGCGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 6762-4232 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMKU01000005.1 Sphingomonas sp. Leaf25 contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6761 29 100.0 32 ............................. CCTTTGAAATGCTGCGGGCGAGGATCGGCGAC 6700 29 100.0 32 ............................. ATCGGAACGAGCGTACCACGATAGTCGTAGGT 6639 29 100.0 32 ............................. TGGCGATGGCGATCGGCACTACCGCATCGGTC 6578 29 100.0 32 ............................. CACCTGTTCGCAGGCACGCCAGCAATCAACAC 6517 29 100.0 32 ............................. TTCACCCGCTCACCCTGTAACCATAGTCTGAA 6456 29 100.0 32 ............................. AGTGCGTCGACCTCTACCGGGCACTGCTTAGC 6395 29 100.0 32 ............................. GGATAGTCGCGCTCGGAAACGTACCCGTCGAC 6334 29 96.6 32 ............................G TATGGGGCAATCTGTAGACAAATCTTTCTTTG 6273 29 100.0 32 ............................. CCTTCACCAGATTGATGCCGTTCTGTGCATCG 6212 29 100.0 32 ............................. TTCGTGCCCACGGTCGAGGGTGCGATCATCAA 6151 29 100.0 32 ............................. GACCGGACAAACGCGAACCCCGCTACCGGTAC 6090 29 100.0 32 ............................. CGCGCCGGCATCGGGATTGAGCATTGCTTCTT 6029 29 100.0 32 ............................. CGGCACATCCGTTTGGCGCTCGCAATGAAAGA 5968 29 96.6 32 ............................G CAATCTTCATGCCTTGGTTCTGGGACCCGGGT 5907 29 100.0 32 ............................. CACCTGCGCCTCGCGGTCGCCCGCCCATTAAT 5846 29 100.0 32 ............................. GTCCTGTCGAGCGGCAAATGCAACCGGCCGGC 5785 29 100.0 32 ............................. CGGATCAGCAGCGTAGCCCGATAGGTCCGGCG 5724 29 100.0 32 ............................. TCGGCGCTGCGCTCGTATTGATCAATCAGCCA 5663 29 100.0 32 ............................. GGCCCCGGCGCGCGCATAGGCCGACTGCCGCT 5602 29 100.0 32 ............................. GCGGTTTGTTGTGCCGGTCGCGATACTCCGAC 5541 29 96.6 32 ............................G GCAACACGACCTTGTCGGAGCGCATTGAGATC 5480 29 100.0 32 ............................. TTCTCGGCATCGGTCTTGCCGCCCTTGCGCTC 5419 29 100.0 32 ............................. GAACGTCAACGACTTAGCGGGGATCGGCACTT 5358 29 100.0 32 ............................. CCCTTCGGCTTCCCCATGCACCGATGGGCGCT 5297 29 100.0 32 ............................. ACATTCGCCGGCGATTACGAGATCGCTACACC 5236 29 100.0 32 ............................. CCGTTCTGGCCGCTGGCTTTGCAGTCAAAAGC 5175 29 100.0 32 ............................. GACCTTCACTATCTGCTGCGCGACCACCAGTT 5114 29 100.0 32 ............................. GTGGTGATGAACGGCAGTGGCGGTCCGATCCT 5053 29 100.0 32 ............................. GGCGCGCGGGTTGCGCCCGGTCGCGAGACGAT 4992 29 100.0 32 ............................. CTCGCCACGTTCGCGACCCAGATGGGCGAGAC 4931 29 96.6 32 ............................T TTCATCCTGTCCATGTTGGAGGAACGCCAGCG 4870 29 100.0 32 ............................. TGTCGACCCCGTCGAGCGTGGCCCACCAAGCC 4809 29 100.0 32 ............................. ATCGTCTTGGCATATTCGTGGAAGGCCTTGAG 4748 29 100.0 32 ............................. CCCGCCGGCGTCGGATACCGCGAAGCCCTTGT 4687 29 100.0 32 ............................. CTGATCTACCGGAAAGAGCGGTTCGCATCCTT 4626 29 100.0 32 ............................. ATCGCCTTTCTCTTGACCGACCCCTTACGGCG 4565 29 100.0 32 ............................. AGATCGGTACGGGTCATCGGCCGACAAGCTCT 4504 29 100.0 32 ............................. ATGCCGGACCGCACGACCTTCCTGTCGAACCT 4443 29 100.0 32 ............................. CGACGCGCCGAGACGGCGCGCCAGATGGCTTC 4382 29 96.6 32 ............................G TCACTTGGCCGTAGGTGGCCGTGTCGATAAGC 4321 29 96.6 32 ............................G TAGCGTGGGGCGCATAGATCGTTGAACGCCGT 4260 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.5 32 GGCTCCCCCGCATGCGCGGGGATAGACCC # Left flank : AACGTCTGGTGCGCAAACGCTCGGCATTGCTGTTCCGCCAGCGTGCTGTCATCCCCGGCATGATCGACCGGATCAAGACGCTGCTGCTGCCGGGCGAAACGCCACCCCCGGCGCCCCCGGCGGGCGTGGCCTGATGGCTATGCCGCTTACCGTCGTCATCACCCGCGATGTCGAGGATCGCTACCGCGGGTTCCTCGGCTCGGCGATGCTTGAACTGGCCCCCGGTGTCTATGCCCAGCCCCGGATGAGTGCTGGCGTTCGCGGCCGGATCTGGGCTGTGGTCGAGGAATGGCATGGCCGCCTGCGCCGCGGCAGCATCGTGATGTGCTGGGCCGAATCCGCCGCCGCCGGCGGTCTGGGGCTTGCAACGCTGGGCGAACCGCCCAAGGATGTGACGGCGCACGACGGCATCCTCCTGGTCCGCCGCGCCCTCCCCGCCCGAACGGAGGATTGAATGGATCTTTGACATTGTGAGAGAGAACAGCCAGTTAGGTGGCAGA # Right flank : GTGGCCGCGCTCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCACCGACCAGCAAGTGAGGCTCTACATGAATGCCCGTCTGACCCGTCCGCAAACCACCGCTGCCGCCATGGCCGGCATCTCCGTCGCGACCGGCCGTCGCATCGAGCGCGACCCACGACCGCCATCGGCGCGCAAGGAGGCGCGCCGGTACCGCACGCGCACCGACCCGCTGGAAGGGCTGTGGGACGAGGTCGTCGTTCCCATGCTGAAATCAGCGCCCGGCCTGCGCCCGGTGACGGTGCTGGGTGAGCTGGACCGCCGTCATCCCGACCGGGTCACCCCGGCCATCCGGCGTACCCTGGAGCGGCGCATGCGCGCCTGGAAGGCGCTGCACGGCCCGGACCGGGAGGTCATGTTTCCCCAGACCCATGGCCCGGGCCGCATGGGACTTTCCGACTTCACCGACA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCATGCGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA //