Array 1 1230675-1231521 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNIM01000001.1 Thermogemmatispora carboxidivorans strain PM5 N688DRAFT_scf7180000000002_quiver_dupTrim_7460.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1230675 37 100.0 38 ..................................... AAGCAGCGTGTCGCAGCGCTACCACAGGCGCGGCGCTA 1230750 37 100.0 36 ..................................... CTTCTACCGTAATAATCTGTCCACGCGCATGGCGGT 1230823 37 100.0 38 ..................................... CCCGGGCAAGCCCTGCGTCATCGGCCACGCCCAGCGCA 1230898 37 100.0 36 ..................................... CAAACACATCCTGAGCCATGTAGGCGAGCTGCTCGT 1230971 37 100.0 35 ..................................... AGCTATGATTATACCGTGACGGTGGAGCCATGATG 1231043 37 100.0 36 ..................................... GCTGGGGATACGCCAATTCTGGTAGATAGTACTGGG 1231116 37 100.0 35 ..................................... AAGCAATCGACGCAATCTGCAATCATTGCGACATG 1231188 37 100.0 37 ..................................... TTACCCCCCTCTAGACCCGAGCCAAAAACCGGTTTTG 1231262 37 100.0 37 ..................................... TTACCCCCCTCTAGACCCGAGCCAAAAACCGGTTTTG 1231336 37 100.0 36 ..................................... CATCAGAATGATGGACCTCCCTTCTCTTTCTCTGGT 1231409 37 100.0 39 ..................................... TTGCGTAGTTTAAGATTGGTGCGACTCAGAGCAGCATTT 1231485 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 100.0 37 GTCAGAACCCCGCTTAAGCCCGTTGAGGGATTGAAAG # Left flank : TCCTGCCTTGCTGTCTTCTTTATCCTCCTTTCAGTCTCCTTAAGCAGATCGGGGCGGAGGCTCTCGACCTCTCTTAGGGCTGCTGCTGAGTTGACACGAGGCTGCCAGGCGCTTGCGCAGTCCTGGGCGTGGGAGATTGCCTGGAGACCACAGGGGCCGTGATTGTGGGTCGGGCCAAGGGCGGGCGTGTCTCCGGATCGGCGAGGCGCTGCCCCATCGAGCTGCTCCATCTGGGTGCACTGCTCTCTACTTTAGTGCCATTTTTTTTACTACTGTCAGTAGAAGTCAATATTGCTGCTTCTACGACTGCTGCCGTTCGCTTCGAGCATCTCGGCACCCGGCCTTCCACGCAGCGATGCTCGAAGGGCTTTCCAGGCCGCTGGAAGGCTATAGTGGCTGGCATCATAGCCGCACAAAAGCGGTCACTACTGACCGCTTTTTTGGGATGCTCGAAACCGCTTGACGGACGCCGCTCCAGATGCTACTCTAGAGAGGGGGCG # Right flank : GGAGGGATTGAAAGAGGAATTGGAACCACTTGGGGATGGCAAGAGTGAATCAGCCCTTTCCCCATAGGGCAGTGAGTGGAGAAAGGGCTGGTGTTTTCCTGGTTGGAAGAGGGTGCAGAGCAGCAGCCTGACCGGTCGCCCCCTAGGAGAAGTAGAGGCGTTCTTCACGTGGTGGCTCGCCCCCCACGGTGAGAACGCGCTTCACACAGGCCTGGCAGAGAGGATAGATGCGGACACTATCCTCTCGCGCATTCAAGTGAACTGCCAGACGCGCACGGAGCAGCACAAGCTCTTTCCTGGTCAGGAAGCACTCGAATACCGAATACTGGGTCCATTTGCCAAAGCCACAGAGGAGCTTGTGTACACGGGCGCGGCGCCGATCATCAGCGATATCGTAGGCAATGACATAGCAGCAGGTATCGTGGAGTCCCATACGGTTACCTCACCAGGAATGGCTGATAGCGCGCGATCTCCCCAGTCAGGTACTTGGCCAGCAGACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAACCCCGCTTAAGCCCGTTGAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 2 1244783-1245334 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNIM01000001.1 Thermogemmatispora carboxidivorans strain PM5 N688DRAFT_scf7180000000002_quiver_dupTrim_7460.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1244783 37 100.0 38 ..................................... CTTGACCACCTGGGAATTGTCCCGATGTCGCCAGGGGA 1244858 37 100.0 37 ..................................... GCAGATCGACAGAGGCATCTCAATGGCCCCTGTCGCC 1244932 37 100.0 35 ..................................... TCCAGAGACACATAGCGTGAGATATCCTGACCTGC 1245004 37 100.0 34 ..................................... TATGTTTTCAAACGGTGCTATGAGCACTGATTTT 1245075 37 100.0 38 ..................................... CTTTGAGACTCTTGACAACCTCCCTCAGCCCCCACTCA 1245150 37 100.0 38 ..................................... CATATAGGTATGGGCCTCACAGAGGGCATAAGCACAGA 1245225 37 100.0 36 ..................................... GAGAAGACATGGAGTTTGCCGTCCCCATCATGATTG 1245298 37 94.6 0 .............................T.G..... | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 99.3 37 GTCGGAAGGCAGCGGAAGCCCGATGTGGGATTGAAAC # Left flank : CTTGCGGAGTCGCGCATCATCGGTGGCCTCCTCCCGATCGATGCCGTAGTGCAGCCCCAGGCTGGCAAAAATCTGCGCGCGTGTGCAAGGTCCTTGTCGCAGCAGTGCCAGCAAGCGCAGAAGTCGCTCGATCCGGAGGGCGGCAAGCCTTTCCTCTGAGGAAAAAGGTTCAGCGCGTTGGAAACCAGCCATGCACTGCTTTCCCTCCACCAATGCAAGAGAGATGCCTTTTACCATAGAGTCTTGGGCGCCCGCTGTCAAGGTCAGGCCTCCTCTGCTGTTGGGGAAAATATGCCGCTGTTGTTGCTCATGCCGTTCGCTTCGAGCATCTCGGCACCCGGCCTTCCACGTAGCGATGCTCGAAGGGCTTTCCAGGCCGCTGGAAGGCTATAGTGGCTGGCATCATAGCCGCAAAAAAGCGGTCACTACTGACCGCTTTTTTGGGATGCTCGAAACCGCTTGACGGAGGCCGCTCCAGATGCTAGCCTAGAGAGGGGGCT # Right flank : CCCTGAGAGAGGCGATGAGACGGTGGAGCGTGCTAGAAGAGGAGAGAACTGTCGACTAGGGGAGGAGAAAGAATGAGGCCGCTCAAGAAGCGGCCTCGAAGTGGTGGAGATGGGGGAGAGTTGAACTCCCCGTCCAGGCAACCCTGTTAAAGGATATCCTACAGGCTTAGTCGGTGTATTGCTATGCGCGGAGGACTCCCACCGACAGGATTCCTCAGCGCTGGCCCTCTGGTCTTAGATGCCGATTAGAGGGCGATCACCGGCACCGCAGCCCGTGTCGTCGGCGCCCACATCTGACCCCACAGGCCAAAGTCAGAGGGACGACGCTCGCCTAATTAAGCGGCGAGAGCGTAGGAGTAATTTGCCTTGTTGGCAGTTATTTTTTTCGCCGGTTGTTTAACGAGAGAGCACACCGGCACCTCGACCTGCAATCCTTTCAACAGCTTGTCTGTCGAAACCCGTCATCCCCATAATACGATCGATCGGGCAGGATAGGATCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGGCAGCGGAAGCCCGATGTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 3 1478244-1479394 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNIM01000001.1 Thermogemmatispora carboxidivorans strain PM5 N688DRAFT_scf7180000000002_quiver_dupTrim_7460.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1478244 37 100.0 37 ..................................... ATGAAGAGCTGCTAGCTCCCGAGGGGGAAGCACAGCT 1478318 37 100.0 39 ..................................... ACGGGAGTATGAGGAGTACAGGCAGATGCGTGCGCGGAA 1478394 37 100.0 38 ..................................... TGCCAGGGGGCCTCGGGGGCACCGATGAAAGGGATCAG 1478469 37 100.0 37 ..................................... TGCCGCTTCACAAGCCGACTCGCTGCACCACGGCACA 1478543 37 100.0 37 ..................................... CCTCAATATTGATGAGTATGCGCTTTTGCATGATTTG 1478617 37 100.0 38 ..................................... TCGCAATGCAGAATATTGCGAAAGACGTGTTCGCTACA 1478692 37 100.0 36 ..................................... TTTGCACGTCATCTATAGTTAAAAGTTCTTTACTGC 1478765 37 100.0 36 ..................................... GGGGATTATGGAGCCACCCTAACAAGCAGGCAACCG 1478838 37 100.0 35 ..................................... TAATGAGGATAGCTAGACAAGGCAAGAAAGGGGAC 1478910 37 100.0 39 ..................................... CTGCAATGGCCGGATCAATCACCTCGCCTCGCTCTCGAA 1478986 37 100.0 38 ..................................... CGGTTGAGTGCTAGCAGTTCTCGAATAGGGTAGCGCTT 1479061 37 100.0 37 ..................................... TTCTCATTGCTCTCGCTGAAGAAGGGACCGGGCCGCA 1479135 37 100.0 38 ..................................... GGGGGAAGAGGGGCCGAGGTGGAGAAGACGTGGAGTTT 1479210 37 100.0 37 ..................................... CTTGCGTCGACGGTCTGCAGGAGCAGCGCGTGGCGCG 1479284 37 100.0 37 ..................................... GGGAATCTTCTAACCTGACCAGGATGGGGATTTCTCG 1479358 37 91.9 0 ..............A..........A..........C | ========== ====== ====== ====== ===================================== ======================================= ================== 16 37 99.5 37 GTTGCAGAGGGGACGATCCGCACGAGGATACTGAAAG # Left flank : TCTCTTTGTCTGGCTGGCTGGCTGTTCTCCTCGGTTGCGGTCACCCGCGCGTCGCGCTCTTCGCCGCCGGCTCCACGGGCTGTCTGGCGCAGGGGCCTGGTTTGGTCGGCGCGGGTCGCCTGCGGACTGGTCTGGGCTGTGGGCCGGTAGGTGGGGTGTGAGGTGGGAAAGTGGGATGGGGTCGCCAGATCCCCCGCGTGATGGCCTCTGTGAGGGCCGCTTTCGAAACTCTCCACGGGCCGCTCAGAAATACGGTGGATTCTGACCGTATTTTGACGAATCTGTGCATGTAATGCTTGTAGAATATGCCTATGTTTATTTGTGCTTTCTCGAAACTCGCCCCTTGCGCGTTGCAAAAAACGAGTTTCGAGAAAGGTCGTAATCCGATAGATTTTTGGGCAGGGGGGCAGGGGAAAACGAGGCTCTCAGCGCCAAAAAATGGGGCCTCGATCGTTATAGTCTATGAAAGATGTATCCCGGGTCCGTTTCCGTTGGGCGCG # Right flank : CACGAGGATGCTGAAACACGAGGATACTAAAAGGAGGATACTGAAAGAAAAGGTAAAGGAAGTAAAAAGAGTCACAATATATAAAAAGAATAGCGTATTGCCCCGGGCATCGCCCCCCGACTAGCCCGGCGACAATACACTACATTCCTACAAAACGGCCCTTTCCTCCACTTTGGCGGATACCCACCCACCTCACTCCTTCACTCACACACCATCATCCCCCAAAAAAGAGAGCCGGAGCCGCGCCCCAGCTCGTCACCAGGCACGCGCTCCGACTCCCCAACGGACCAAGTACAGAGCGAAACTCGGATAGAGAGAGCTCGGGTACGTTAGGGAAATGGTATCTTGCTCAAACGCTGACTCCTGACCCAACGCCCTAAGCGCGCCGCTCCCGCTGAGACTGAGGCTGATGAGGCCACCGCTCCCACGCTCAGAGGCCGCGTCTGCACCTGCTCCACCTGCTCCGCTCCTCGCTCGCCTTCCTCGCCTGCAGCGTCAGC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGAGGGGACGATCCGCACGAGGATACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 2192484-2193564 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNIM01000001.1 Thermogemmatispora carboxidivorans strain PM5 N688DRAFT_scf7180000000002_quiver_dupTrim_7460.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2192484 37 100.0 38 ..................................... AGACGAATGAATACCTGGCGAGAGGTATTGCTCATGAA 2192559 37 100.0 38 ..................................... CGGTAAGTTTTCTGGACTTGATCCAGGCTGGCAGCATT 2192634 37 100.0 35 ..................................... TCCTGGCTCGGATGGTTGTTGAGGTGAGTCAGGGA 2192706 37 100.0 39 ..................................... TTCGTCAAAGTAAGGATGTTGTTTCTTCTCTATACTGGC 2192782 37 100.0 36 ..................................... ACTTAAAGGAAGCATCTACTTGCTGGCTGCAGAAAT 2192855 37 97.3 37 ....................T................ GGTTGTAGCCAGCGAGTGTGGCAGGCTTCACGCGAGT C [2192878] 2192930 37 94.6 35 ..................T.T................ GTCTTGCTCGTATTCCAGATAGTACAGGTTGTGAC C [2192953] 2193003 37 97.3 37 A.................................... GGCAGACTCCCATCAAGACCAGGCTCCATTCTTTACA 2193077 37 94.6 38 .....................CT.............. TCGCTCGTTCATGATGGACAGCATAGAGATTAAACCAC 2193152 37 100.0 40 ..................................... CGATATAGGAGCAATATCGCACTGGGAAAAACTGCCGCAA 2193229 37 100.0 37 ..................................... ATACGTCCTACGCTTGGGCTAGGGGAGTCACTTGTAC 2193303 37 100.0 36 ..................................... ATCAATCCGCCGGCGGCATCGCATTTAGATATTTTA 2193376 37 100.0 39 ..................................... AAAATTCGCGCTGTAATGGCCGAGAAGCCGCCTTACTTG 2193452 37 97.3 39 .....................G............... AAGAGCCTGCAAGATCCTTGCTAGGCGGGGACTCCGAGA 2193528 37 83.8 0 ............GT......T....A......C...A | ========== ====== ====== ====== ===================================== ======================================== ================== 15 37 97.7 38 GTTGCAGAGGGGACGATCCGCACGAGGATACTGAAAG # Left flank : CACGTGCTGGAAAGCCTTCGCAAAGCGATATTGGTGTTCCACGCCGGCGTTTCTCCCTTTCTGATAGACATAGTCGGTATCTATCACATATCAGAACAGGGCGTCTCGGGCTTAAGCTGGCGGGAGAGGGTTGAGGGGGAGGCCGAAGGCTCCTTCCTCCACCTTCAAAGTCGCAGGCTGAGCCGAGACCCCTGGCGATGAGGGCCGTTTGAGCGATCGATTCGAAACTCTCCGGAGCCAGCAACTAAATGCGGTCAGATTCTGACCGCATTACCGTGAAAGCATGCATGTTTTACTCTTTATATGATAAAGATAAGACTTATGCACTCTCGAAACTCGCCCCTTGCGGCTTGCAAAAAACGAGTTTCGAGAAATATCGTAAGGCGATGTATTTTGAGAGGGGGAGGGAGAGAAAAACGAGGCTCTTAGATGCCAAAAACGGGGCCTCAATCGTTGTAGTCTATGGAAGAAGTATCCCGGGTTCGCTTTCGTTGGGCGCG # Right flank : AGAAGATACTAAATGGGATATCTCGAAAGAAGTATGCTGAACAGTTGATGAAAGAAATAAGAACGCTCCATCGGAGAATGCCCGCAGAAAGGCGAGAGATCACTGTCTGCACATAGCCATCGGCCAGCAATGGCGGATGGTGCTGATCCCTGGCAAGGGTCTCGCCTGCCGGCCAGCCATTAGCTTCCCTTAGCCCTCGCAGCACCTGCCAGAGACACAGCTTAGGCTTCCAGCTCCTCAAGGAGATCCTCGCGCCCCTGCTCCCGCGTAAACTCCACTAGCTCTGACCACCCCAGCACCGGCACCGCCAGACGCTTACAAATATGCCCCATTACCTGAAGCAAGGACCCGCGGAAAAGCGGCTGTCTCCGACGCTGCTCGCGCTCCACAAAGAGCAGCGTCTGCTCCAGAGCACTGCGACGCCGCAGCTGCTCGTCCTTACACCAGAGCTGGAAAAAATACCCATCCTCCTGACGCACATTGCCCACATCGCTCGGGCG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGAGGGGACGATCCGCACGAGGATACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 5 2332665-2333068 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNIM01000001.1 Thermogemmatispora carboxidivorans strain PM5 N688DRAFT_scf7180000000002_quiver_dupTrim_7460.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2332665 37 100.0 36 ..................................... GCCGATAGCTCTTCGTCATCGAGGAGGTTTTCAAAA 2332738 37 100.0 36 ..................................... GCTTGCCGGATCTTGATCATCAAGCGGCTCAATCAG 2332811 37 100.0 36 ..................................... TTGCCTCCAATGAGTTGTCTGTCATGACAATTGGCT 2332884 37 100.0 37 ..................................... GCGCTTCTCCAAGCAACGGCAATCTCACTGTGCCGTC 2332958 37 100.0 37 ..................................... ACGTAGACGTTATAGCTGGTGGCATTGGGCACCCGGA 2333032 37 86.5 0 .......G............AAG.............C | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 97.8 37 GTTGCAGAGGGGACGATCCGGGAGAGGATACTGAAAG # Left flank : GGCCTCTCCGGCGGAGCCCCCACTCCGCCGGAGCCGGTGGGTGCAGCCTTCCAGTAACCAGAAGGATTACTTATATTGTACGCGATGCTCCAAATATATGTTTGTCGATATAGGACCGCTGCTGACAGTGCTGCTCGCTGGCTGGCGACCTGGGAGGCACTGGTTGTGGAAGGGTGCACTGGGGCAATCTTCGGCTCATGTGGCCCTTGCGCGGGGCCGCTTCGAAACCCGGCGAGTGCCCCCGGGAAATGCGGTCAGATTCTGACCGCATTGACCTCTGGACGTGGAGCTTCTGCCTGTGGTATACTCGAAAATGCGATGCTGCCTCTTCGAAACTCGCCCCTTGCGGTTTGCAGAAGACGAGTTTCGAGAAAGGTCGTGGGACGATATGTTCTGCGCGCGGGAGAGGGAGGAAAACGAGCCTCTCAGACGCCAAAAATGGGGCCTCAATCGTTCGTGGATGGTGAAGCACTATTCCTGACCTCTTTCTGCCGCCCGCG # Right flank : CGCGATACGTGGTATACTACAAGATAGTGAGAAGTGAGAGGCAATACTGATTTGACTGGCACACACGCGGATCGTTGTCCGCTCCTGACCGCCTGGCCGCTCCCGTGGCCATAACCAGGACTGGGCCAGACGACGCTACGCTGCCCTGTCCTGCCCTGGCCAATAGCCCAGGCTCCCGGCTGCTCCATCCTACACGCTCGCGCAACTGAAACGACAGCTGAGCAGCTCAGCCAGCAGCCACCAGGAGAGGAGACGATGACGAACCAGGCTCTGCCCCTCTCGTTCGCCGGCTAACTGCCTCGGGCAGCGCCAGCCAGCCGCGTCTGTCCGCCTGTCTCTCTGTCTCTCTATCTATCTCTGTCTATCTATCTGGCTGTGCTCGTATGCGAGGCCGGGGAGGGCTTTCGTCTATGACACGCGATCAGGGGCCTGGCGAGGATGGGCGGCAACAGGAGGGAACAGGCAGCCGCATCGGCAATTATCGCTTGCTGCGCCGCCTC # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGAGGGGACGATCCGGGAGAGGATACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 6 2958993-2959618 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNIM01000001.1 Thermogemmatispora carboxidivorans strain PM5 N688DRAFT_scf7180000000002_quiver_dupTrim_7460.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2958993 37 100.0 35 ..................................... TTGTAGACACAGGGATGCCTCTCACCCCTACCTCG 2959065 37 100.0 35 ..................................... TTGTAGACACAGGGATGCCTCTCACCCCTACCTCG 2959137 37 100.0 37 ..................................... CAACAGCCGAATTTGCCAACCTGTCCAGGCCAAAAGC 2959211 37 100.0 39 ..................................... ATTATATCTATATCCCGGGATCGCTATCCGGGGAGTCCC 2959287 37 100.0 37 ..................................... GGGCTATTTCTATCATCCGCGCGCGGATCTCTTCCCG 2959361 37 100.0 37 ..................................... GGCAGGACCGGGTATGACTGTCCCGCTACGCCCACTG 2959435 37 100.0 38 ..................................... CTCACAATGGTCACTCGCGGCCTGTCTGCACGTGTTGG 2959510 37 100.0 35 ..................................... TTTTGCCGTCGGAACTGGACAGATTACCTCTGTCT 2959582 37 83.8 0 ...................G...G.........GGGA | ========== ====== ====== ====== ===================================== ======================================= ================== 9 37 98.2 37 GTCAGAAGCAGCGAAGAAGCCCGTCTGGGATTGAAAC # Left flank : GTCGCCCTCATCCCTTCACCTGGAAGCCGGCTCCTGCCTGTCTTCCCCAGCGCATGGTCCGACCCCGTGGCTCTACGGTCCCAGCACTCAGGATGCTGTTGGCAGAGGGAGCCTGCTGCCATGCCATCCGCAGGGGGGAGCGTTTCATGGGAGCGAATAGCCCACCACCGTGGCTGCAGGGACAAACCCTGGCGGGGAGCTGACTCGGGAGGACCGCTCAGCGGCATCTCCTGCGGGCGGGCTGTGCCATGCTGCTGCCCTCCATGCTGCTCTTACTGCAAGGAATAGTTCTTGCTGCTCTCGCTGCCCAGGCTCGTCGCTTCGAGCATCTCGGCACCCGGCTTCCCACGCAGCGATGCTCGAAGGGCTTCCCTGGCCGCCGCAGGGCCACAGGGGCTGGCATCATGGCCTCACAATAGCGGTCACTGCTGGCCGATTTTTTGGGATGCTCGAAACGGCTTGACGGAGACGGCTCCAGATGCTATCGTGGAGGAGGGGCT # Right flank : AGAGGGGTCACCCAGACAGGACCTGGTGCTTCAGCAGCCGGCCAGCGCTGCGCTTGCTGCTCGATCGGTCGCACGGGGCACCGCGTTGGTCGGGTGCCAGTGCGAGGCTGCAGGCCACTGAGATGCTGGCTGGCGCTGCAGTGCAGGGGGGGCCAGCAGGGAGGGAGCCGGAGAGGAGAGTGGGTGCCCCATGAGGGGAGGGGAGCCAGGAGGAGACGGGACAGTCGAGTGGGGATCTGGCTCTCTCTCCAGCAGGCGTGGGCATCACGGGCATCAGCAGCTCCCCTCTCTCTGGACCAGGAGAGGAGCAGCGAGCAGCCATCGGGGGCGGTATGCTGGGGGCGGTGTCTGGCCGTCAAGTCAACGGTCACCCACGGACGGCGCCGTCGGCACGAGGCACGAGGAGTGGTCGCGGGACCAGCCGCTGTGCGGGCAGGGCAGGCGGCCCGCTCGCTGGCGTTGGGCGATCCCAGGCGCTGTCCCTGCCTCCCGTTGCTGCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAGCAGCGAAGAAGCCCGTCTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 7 3042261-3041855 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNIM01000001.1 Thermogemmatispora carboxidivorans strain PM5 N688DRAFT_scf7180000000002_quiver_dupTrim_7460.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3042260 37 100.0 40 ..................................... TTTCACATGGTAATAACCATGACAACTCACTAGCGGCTTC 3042183 37 100.0 37 ..................................... ACTTTTTCACCCAACACGCCATTTTTCCCCCGTCAGG 3042109 37 100.0 36 ..................................... TTCGTTACCCCATCGGCACTAAAGACATCGGTCTCC 3042036 37 100.0 35 ..................................... TAAATATTTGCATAGATTGAATATTGCATGTTCGA 3041964 37 100.0 36 ..................................... GATCCCTGGATGACTCCCCCTATCCCCAGAGGCGCG 3041891 37 97.3 0 ...T................................. | ========== ====== ====== ====== ===================================== ======================================== ================== 6 37 99.5 37 GTTAGAATACCTGTGAAGCCCGCTGTGGGATTGAAAC # Left flank : CCCGCCCAGGCTCTCCAGCCAGGGGCTTCGATGCAGCAGGAGGGCTATCCCCAGCGCCCTCGCCTCGACGGGGCCGTGACGGGCCCCCCGGATCACTATGCTCCAGGCCCTGCCTGGAAGCAGAGGAGACCAGGCGGAGGAGACTGCTGGCTCAACGCTGGGATTGGACCTGCCCGGCACAAGTGAGGGCAGGTCCAGTTCAGGCGACGAGCCGGGGTGGACGGACCCAGGCCCCTCGCTGGTGACCATCCTGTAATTATATGTTATTTTTATGTTATTCATATAATGAATATCATGTTCTTGATAGAATTGCATCTCGCTTCGAGGATCTCGGCACCCGGCTGCTCACGCAGCGATCCTCGAAAGGCTCTTCAGGCCGTCGGAAGGCCACAGTGGCTGACATCATGACCGCATGAGAGCGGTCACTGCTGACCGCTTTTTTGGGATGCTCGAAATGGCTTGACGGAGACCGCCTGGAATGCTATTCTAGAGGGGGTACC # Right flank : GCCGGCGATAAAATCTCTAACCGGTTTTTCGTCCCTGGTCAGGATCAGCTTTGCTGACGTCTGGTGCTCAGTGTTGACCAGGCCGGCTGTGGCGTGCTTCCTGAAGGCTTCTTCCCCTCTGCTGCCCTCTGTAGTCGCCTCACGCTCATCACGCTGGCGAAGGCCGCCCTACCCCTGGTATGAGCCAGTGCCTCCCGCCTGCTTCCCGCTCTCTTCCCGTCTGCTTCCCAGGAGCTTCCCCCTGCCCTCGGGTAGAGTGGGGGTGATGTGATGATGGACGGCCCCCACGAAGGGGCAGCACCTTCGTGGCGTCCATCCAGCAGGCGGATGCACGCCTGCCTCGCCTGAGAGAGAGGCAATCCCCGTGTCCCCTCCGATTTGGACGGACACGACTCTCAGTCATGGTCCCGAAAAGCCGCGGGCTCTCTGCGAGCATGCACAGCGCTCTGCGGCGCTCGCGTGATCTGACGACAGGGCGACAGGCGACACGATGACAGCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGAATACCTGTGAAGCCCGCTGTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 8 3163431-3162360 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNIM01000001.1 Thermogemmatispora carboxidivorans strain PM5 N688DRAFT_scf7180000000002_quiver_dupTrim_7460.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 3163430 37 100.0 34 ..................................... GACATTCCCTATCTCCTTCCCAAAGATCAACAAG 3163359 37 91.9 36 ......................G...GA......... AGTCGGCGAGGAAGTCCCTACCTGGCAAGTAGATGC 3163286 37 94.6 36 ....................G..C............. GTGCGTGCCGTGCACTGTTGCAGCGTGTCCATATTC 3163213 37 94.6 37 ....................G..C............. GTGGCTCGCCCTGGATCAAGCGTTGCTGCAGTTAGAG 3163139 37 94.6 39 ....................G..C............. GCTGGCTCCCGAGAGCGTGCGCACCATCCTGGACGTGGG 3163063 37 100.0 35 ..................................... GGTGGCCACAGCGCCGCCGCTTCCCATCATTCCCG 3162991 37 94.6 37 ....................G..C............. GTGGCTCGCCCTGGATCAAGCGTTGCTGCAGTTAGAG 3162917 37 94.6 39 ....................G..C............. GCTGGCTCCCGAGAGCGTGCGCACCATCCTGGACGTGGG 3162841 37 100.0 36 ..................................... TATATCATCAACGGTATGGAAATACCGAATTCTTTA 3162768 37 100.0 35 ..................................... CGACATCAATATTCCTCTGCTCAGCATGAGCGGGG 3162696 37 100.0 37 ..................................... CCCCGTTAGAGCTACACCCCGGTCAACGTCAGCTCGT 3162622 37 97.3 35 ....................T................ GAAGGCTCCCGATCCCTTCGAGGAGCTGAGGCTAC 3162550 37 100.0 38 ..................................... CATGACGATCTCCTTTGGACTTATGACGATCTCCTTTG 3162475 37 100.0 42 ..................................... CCGGATCTATGCCTTGGAGGGCACGGTGACTATGCCTGATGT 3162396 37 94.6 0 ....................G.......T........ | ========== ====== ====== ====== ===================================== ========================================== ================== 15 37 97.1 37 GTTTCAAACCCAGAGCGGGCAAAACAAGCATTCTGAC # Left flank : AGGGCTTTGCCGATGCGCGCCAGTTCTTCGTAGAGCCGATCTTTAAAGGCTCGCTTGCTTTCAGGATGCTGGTATGCCACGCCGATTTCTGCTCTCCTCTCTCTTCTTTGCTCTGTTCTGTTCTGCTCTGCTCTGCTCTGCTCTACTCTACGCTCTTCTCCTGGCTCTCCTTGCTTGCTGAGACCAGACGGCCACGGTTGTTGGTGGGACTGGCTCGGCGCTTGATCCTGCGCTCTCTGTCCACTCTGTGACCGGCTTTGCGGCGCCAGGCTCTGGGTGCTTCGATAGATTGATATTCAATAGAATAATTGAATGATTGAGGGATGTCAAGGTCAGGGGGGGCGCGTCGATGGTCGGGTGAAGGGGCTAAGCCTGGAGCGGATGAGGCGGGCTTCCTGACCTGGGTTGCGGCTAACGATTCTGAGGTGGAGTCAGGCGGCGCCCATCCCAGGCGGGCGCAGGAGGCATGTCAATCCTTACATAAGGTAGGGTCCTGAGAC # Right flank : GGTACCCTCTCCAGAATAGCATCGCAGGCGGCCTCAGTCAAGCCTTTTCGAGCATCCCAAAAAAACGGTCATCAGTGACCGCTTTTGGGAGGTCATGATGCTAGCCACTATGGCCCTGATGCGGCCTGCAAAGCCATTCGAGCATCGCTGCACGAAAACCCGGGAACCGAGATCCTCGAAACGAATGGCATGAGCGGCAAAAGAAGCGCGTTCACCTCCGCCAGCAACCGAAAGAGCAGCTTCAACGGAGAGGAGCTACACCGGCGCCGACTCACCCCAGCTACCGACCACCTCCGGCCTCCAGCGGAGGCCCGAGCGCCAGGGTGCTGGCCGGCAGAGCGAGGCCCTGGCTGGGCCCACAAGGGGAAGAGATTCAAACCTCGTCGCACCCTCGCCCTCGGCAGCGGACACCTACCCCCAGCGCAGACCGAAGACGTGCCAGCGCGACGAAGTAGGCGGCAGCGACATATGTTTCCTTCTTGGCCAGGGGTGCCAGTAAG # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACCCAGAGCGGGCAAAACAAGCATTCTGAC # Alternate repeat : GTTTCAAACCCAGAGCGGGCGAACCAAGCATTCTGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 9 3261929-3261586 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNIM01000001.1 Thermogemmatispora carboxidivorans strain PM5 N688DRAFT_scf7180000000002_quiver_dupTrim_7460.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 3261928 37 97.3 36 .........C........................... CATCCAGCAATTCCGCGTGTAATCGAAGAACGCCAA 3261855 37 100.0 42 ..................................... ATATTCTCGAAAATAATTTCGAGTTATCTTCCAACCACAAAA 3261776 37 100.0 42 ..................................... ATATTCTCGAAAATAATTTCGAGTTATCTTCCAACCACAAAA 3261697 37 100.0 38 ..................................... TCATGACACAACTCCCTGACTCCTCTTCCTCGCTGTTC 3261622 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 5 37 99.5 40 GTCAGAATGGGAGAGAAGCCCGCTCTGGGATTGAAAC # Left flank : TCCTTCCTTTCTTCTGGTCTCGGCTAGTAAGGCAAGCTGTGCTCTGCACAGAGAGAGATGCATCTTACCACGATTGAGCGGCGCCCATTTGCTGGAAACGCTGCGTCTCCTCTTCAGTGCTTTGGCGGGCCGCTCCGCTGACATTCTATATCGCGGTCCGGCTATAAAGCAAATAGTCTTTTTGGGGATATGTATCAATAAATTGATGGTTGGCCTGGAGTGGTACCGCAGCTTTATTGCCGTCTCCCACGCCGGCGCTCTCTCCGGGGCAGCAGGACCCTCTTGGGTAAATACCTCTTTTGCCGCTCATGCTGTTCGCTTCGAGGATCTCAGTGCCCGGGTTTTCATGCAGCGATGCTCGAATGGCTCCCCGGGCTGCACCAAGGCCATAGTGGTTGGCATCATGACCGCATAAAAGCGGTCACTGATGACCGTTTTTTTTGGGATGCTCGAAAAGGCTTGACTGAGACCGCCTGCGATGCTACCCTAGGGAGGGTACT # Right flank : GCTAAAGACCTTCCAGGTCAAGTTGCATCTCCGCCAGGCCCTCCTGAGCGACATAGCGGACCGTCAGGCCGCTGATACGACAGGTCAGGCTCTGGCCGCTACCCGTAGGCGCCAGGCTATCGGTCAGTGTCACGGCATCGAAAAGCTGTAGCGCTGGATTCAGCGGCACAGTGATGCGGTGGCGGCTGGCGGCGCGTTGCTCCTGAGCCAGCAAGAAGGCCGCCTTCTGAGCGCATTGGCTGGTCGTGGTCAGCTTGTGGTCAATGTGATAGCGCAGGCGCTCGCAGCCCACCTGCTGCACATGGAGATCGTCGTAGGCCTCAGCGGTCGTCAAGGCTTGAGGCGAACCACTGGCCGGTGGCTTGCCACTGACGATGATATGATTGGCGCGCTCGTCGCTGCTGCCGATACTGAGCAGCTCAATCTCTGGCTGGTAGGACCAGACAGGGGCCTCGCTGCTGCTCAGCTCACGGAAGCGCAGAACCTCATCCTGATCAAGG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAATGGGAGAGAAGCCCGCTCTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : NA // Array 10 4027279-4030726 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNIM01000001.1 Thermogemmatispora carboxidivorans strain PM5 N688DRAFT_scf7180000000002_quiver_dupTrim_7460.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================== ================== 4027279 37 100.0 36 ..................................... TTCCGCTTTGCTGAAATTGGTTCGACGCGGCATATA 4027352 37 100.0 38 ..................................... CTGTTCAACCAACATCATGTACGACTTCTCGGATGCTA 4027427 37 100.0 39 ..................................... CCAGACCAAGATGATCAAGGAAATTGCCAAGATGATAAG 4027503 37 100.0 35 ..................................... TCAGTGCCAGCTCGCTGATGGTCGGAGAAGGTTGG 4027575 37 100.0 35 ..................................... TCTTTGGAGCTGTTGAGTGGATGTTTGCCAACGCA 4027647 37 100.0 37 ..................................... GCCGAAACCTGGCAGCGACCATCTCTATCTGCTCTGT 4027721 37 100.0 41 ..................................... AGAGACGGAACGCATTCGTGTCTCTGGCGTGGAATGTATAT 4027799 37 100.0 37 ..................................... GGCGGGCGAGCATTGTTCTGCAAGAGGGCTAAGTTCC 4027873 37 100.0 35 ..................................... AGAGAAACCAAATAGGCTGAAAAGGGATGTTGACA 4027945 37 100.0 37 ..................................... ACTGAGGTTTAACCATGATGCTCTACCGGAATTTCCA 4028019 37 100.0 38 ..................................... AGCTGAGCCGTGGCCAGCAAACTGGTGGGTAGGGGTAA 4028094 37 100.0 36 ..................................... GTTAGACAAGACCTCAAGCCCTTATGGCGAAAACAA 4028167 37 100.0 38 ..................................... ACTGGCTGACGGTTTCAGCCGTGGTCACACAGGTACAG 4028242 37 100.0 39 ..................................... TTCATCCTTCTCATCCCCTTTCTTATCTTTCTTCCCCCC 4028318 37 100.0 35 ..................................... GCGTTGACCAGCTCTGCAAAACATCTGTCTTTGTC 4028390 37 100.0 39 ..................................... ATAATCCAGCCAGCCCCGTGCAGGGAGTTCCTCTTGTTC 4028466 37 100.0 36 ..................................... AGACGGTCGTTCAACACCCGAAGGATTTGGAAAGCG 4028539 37 100.0 40 ..................................... TAGCCTGGTGCTCCCTGTGGCGCGGCGGGCGCGCCGGGTT 4028616 37 100.0 35 ..................................... TTTTCTTCGCGCTGATCAGGCGCAGAGCCTGGGGC 4028688 37 100.0 37 ..................................... TCGATACTAGGCTGGCTCTCCCCCTCCGTCACATAGC 4028762 37 100.0 38 ..................................... ATGAAGAAGGGACACAAAAGAGTAAAAGGAGTTTCTTT 4028837 37 100.0 37 ..................................... ATTTTTGATTTTACCACGGGACACAACAAGGCTCCAG 4028911 37 100.0 36 ..................................... CCACAGAGATACTAGCATGTTTTCACTCTCTCAGTC 4028984 37 100.0 37 ..................................... ATTTTTGATTTTACCACGGGACACAACAAGGCTCCAG 4029058 37 100.0 36 ..................................... CCACAGAGATACTAGCATGTTTTCACTCTCTCAGTC 4029131 37 100.0 38 ..................................... GTTTCAGAGAGAATGGATACATCGCGCAAATTATCGGG 4029206 37 100.0 38 ..................................... GAGCGCCTCATGGCAGGGGACCGATTGAAGTGAAGATG 4029281 37 100.0 37 ..................................... TCAGACAATGCCAAGGAGCTGACACCCAGGGCTGTTT 4029355 37 100.0 37 ..................................... CTTTTTGCAAGAGGGACATGCGCTTTCGCAGAGAGCC 4029429 37 100.0 35 ..................................... GCGGGCGGGGTAGTGGTCTATGCCCTGCTTGCCAG 4029501 37 100.0 39 ..................................... TGCCGGACTATGGACGTGCGCGTGAATATCTTGCTGCGC 4029577 37 100.0 37 ..................................... GAATCTAGATTTTGTGGAGTATGTTGACGTCATTTAC 4029651 37 100.0 36 ..................................... GGTCAAACGCTTACTGGACGCGCTGTTTCCCCACTA 4029724 37 100.0 35 ..................................... GTACTTCATAGCCACTCATGCTGTGTTTCACGTCA 4029796 37 100.0 36 ..................................... ACCTGGTACGCATGGGTGGCCGCCGGGAAGCCACCA 4029869 37 100.0 36 ..................................... GCTCAGGCTGTTCATTGCCAATCGCCAAGAGCAGCG 4029942 37 100.0 35 ..................................... GGCAGCTCTTAGAGGCAAGAAAGGAGGAGAGTCAT 4030014 37 100.0 36 ..................................... ATTTCCAGAGGATGTACGCGACGGCCCAGCAGCTCG 4030087 37 94.6 36 ........................C....T....... TGCATTCACGATTGAGGAGAGCGATGATGCAACAAC 4030160 37 94.6 35 ........................C....T....... TCGTCTTTTCATTGCATGTTGGCTTTTCTTCTGTG 4030232 37 94.6 38 ........................C....T....... ATAGCACGGATAGATACCGAGCGAAGATAGCCTCCAGC 4030307 37 91.9 37 .........A..............C....T....... CTGCTGGCAGAGGTGTTTGAAGAAAAGAGAGAGCAGA 4030381 37 83.8 36 ..........GG.........AC.A....T....... CTCGAAAGAGGAACTAGCGCGCCGATTACAGTGCAC 4030454 37 89.2 38 .....................AC.A....T....... GGACTGATACGCCATACACAAGCAGATCGCCTCAGCAA 4030529 37 97.3 52 .............................T....... GTGGATACTGAAAGGCCTCGATGATCGCCACCCACCCATCTGCCAGATCCGA 4030618 37 86.5 35 .C........GG............C....T....... ATGAGAATGGACAGCGATCTCTTCACGATATCAAC 4030690 37 83.8 0 ..........CT........TAA.G............ | ========== ====== ====== ====== ===================================== ==================================================== ================== 47 37 98.2 37 GTGGCAGGGGTCTCGATCCGCTTGTGGATACTGAAAG # Left flank : GTCGCCTGGCGGGGGGCTGCGCTGTTATGTGCCCGAGGTGACAGGGCCGGGCCATCAGGGGAGTTAGTAGGCCGTCACTATCGCTTCCGAGGGGGGCGTGAGCGTGCGGGCAGGGTCTGGCCCGCATGCTTTTTGTTTTTGGTGGGAGAGGGAGACAGAGGAGCAGTGAGTGGGGTGGGTGAGGGAGCCTGGCCAAAAAATGGCCCATTTAAGAGGCCGATTCGAAACTCTCCGCGGGTGCCCCCCCGATCCGGTCAGATTCCGGCCAAAAGTGGCCGGAATCCCGCATCTTTTGCTGCTTTTATAAGTGAAAATATATTGATGCTTTCTCGAAACTCGCCCCTTGCGGCTTGCAAACAACGAGTTTCGAGAAAGGTCGTGATACGATAGATTCTGGAGGGTGGGGGGCGAAGAAAACGAGGCGTTGAGATGCCAAAAATGGGGCCTCGATCGTTATAGAATAAGTGAGAAGTATCCCCGGTGCTCTTCCGCCGGCTGCG # Right flank : GCAGCACAAGCAATAAAAGCGCGGAGGAGGCTCTCCCTCCCCCGCGCCTGCAGTCAACCAATCACAACAAGGAGCCTATCGCCCAGGCAGCTCAGCCCGGACCTGGTCAGCCGCGACACCACCCCCCAACCACAGCCCAGCAACCTCAGCCCACCGCCCGCCTGAGTAGCTCCCTGATCCGCTCCTCCTCAGAAGGCCCCAGCGCCGTCAGCGCATAGGCCGTCGGCCACATCTGTCCCTCATCCAGATGAGCCACATCGTTGAAACCCAGCGTCGCATAGCGCGTCTTGAACTTCTGCGCCGGCTGGAAAAAACAGAGAATCTTGCCATCCCGCGCATAAGCCGGCATCCCATACCACGTACGCGGCGCCAGCTCCGGTACACACTCCTTCACCAGCTCGTGCAAGCGCAGCGCTAAACTGCGATCCGGCTCGCTCAGCTCGGCAATCTTCGCCAACACCTCCTGCTCGCCCTGCTCCCGATCCTTGCTGGCCTTCAGC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGGGGTCTCGATCCGCTTGTGGATACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 11 4084443-4082566 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNIM01000001.1 Thermogemmatispora carboxidivorans strain PM5 N688DRAFT_scf7180000000002_quiver_dupTrim_7460.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 4084442 37 100.0 42 ..................................... CTCCTGTTACCTGCAAGCACTCTCGTCTGTGACGGGGGCCGT 4084363 37 100.0 36 ..................................... TCGGGTGTTGAACGACCGTCTGGGGACTAGTTACCG 4084290 37 100.0 37 ..................................... GTGGACTCCTGTCATTCAGCAAGGAGAGAAGGGGGGG 4084216 37 100.0 35 ..................................... GGTCTTCTTCTGCAGGGGCAAGGATCGACTCACCC 4084144 37 100.0 36 ..................................... GCTATTTTCGCGAGTGCCGTGCACGCGGTATCAAGA 4084071 37 100.0 38 ..................................... AACCGGAGCCGGGTGATTGCGCGCACAGAAACGATCGC 4083996 37 100.0 36 ..................................... AGAGTCCCATTGAGGGGCGAGTGGCCGCAAGGTCAA 4083923 37 100.0 39 ..................................... TTGCTGAATGCGCTCCCGAATAACTTGAGCCAGCCATTC 4083847 37 100.0 37 ..................................... GTAGTGCTGCTCTGGGTCAACCCCATGCTGTTTCAGT 4083773 37 100.0 37 ..................................... ACTTGAAGGGCCATTAGTTATCTCCCCTCCAAACAGC 4083699 37 100.0 39 ..................................... AATCCATCGGCAAGAATCCTGATGGTTGTTCCAGCGAGG 4083623 37 100.0 37 ..................................... TGTACCCCAAGGGGTAAATGCCCACTTTTTCGGGACA 4083549 37 100.0 36 ..................................... TTTCAAGAGTGGCGACAAGCTCAAAGCTTGTTGCAG 4083476 37 100.0 35 ..................................... GATTTCATCCCAGTAGCCATGCCTCCTTTGCCGTC 4083404 37 100.0 38 ..................................... TCCCGTCAATGTCAACTTGCGACGCATGTGCCCCCCAT 4083329 37 100.0 36 ..................................... GCTATTTTCGCGAGTGCCGTGCACGCGGTATCAAGA 4083256 37 100.0 36 ..................................... GCACCATCTCTTCATCAATCGTGAGCGCCCACTCAC 4083183 37 94.6 35 .....................AC.............. CTTGAGCAGCCTCGCGCACATTGAGCGTGAGCTGT 4083111 37 100.0 37 ..................................... GTGCCACCGCTCTCGCGATTCACTTCCGCCGCAGTTT 4083037 37 100.0 35 ..................................... AACATCCCGACCTGCGCCGACTCCACTCGCCCAGT 4082965 37 97.3 36 ...........G......................... AATGGATTTTGCAGGCAATGGCGATCACCCATGTCC 4082892 37 97.3 35 ...........G......................... AACATCCCGACCTGCGCCGACTCCACTCGCCCAGT 4082820 37 94.6 36 .....................AC.............. ACGGCTAGAGAATGACCATTTTGGGGCAATACATGC 4082747 37 94.6 35 .....................AC.............. GCGTACCTGGTTAGGCTGTTCGGACGTAGCCGTTT 4082675 37 94.6 36 .....................AC.............. AGATGGCCTTCGCAGGATTGCACGGTTGGGAAGCCC 4082602 37 89.2 0 ..........AG.........AC.............. | ========== ====== ====== ====== ===================================== ========================================== ================== 26 37 98.5 37 GTGGCAGGGGTCTCGATCCGCTAGAGGATACTGAAAG # Left flank : GCTGGCGTTCGACGGCGCGTATGCGGTTACTCCAGGTGCTTTTTCATCTCTATGGTGTTGATGAGGTGCAGAGGGCACTGGCTCATCAGGGGTGATCTGCACTGAGGAGCGCCTGTTTGCAGCGCGGGCCGGCGGCTGGCCCACGTGCTTTTTGTTTTTGGGGAGAGAGGGAGGGAGGGAAAGGGAGCCTGGCCAAAAAATGGCCCATGTGAGAGGCCGATTCGAAACTCTCCGCGGGTGCCCCCCCAATCCGGTCAGATTCCAGCCAAAAGTGGCCGGAATCTCGCATCTTTTGCTGCTTTTATAAGTGAAAATATATTGATGCTTTCTCGAAACTCGCCCCTTGCGGCTTGCAAAAAACGAGTTTCGAGAAAGGTCGTGATACGATAGATTCTGGAGGGTGGGGGGCGAAGAAAACGAGGCGTTGAGATGCCAAAAACGGGGCCTCGATCGTTATAGAATAAGTGAGAAGTATCCCCGATGCTCCTCCGCCGGCTGCG # Right flank : AGATGAGAGCACAGAAAAGCACAAAGAAATGAAACATGAGCGCCGGGTAGCATGCCCGGCGCTCACCGTGCTTCTCTTCCCTAATTCAAGAGATGGCAACGAGCAAAAGGAAAAGATCCATCCTCCACACTCAGACAGAAGAAGAGCGCAGCCTCAAGCCAGGTGCCACCTCGCCCAGCACAGCATTCAAACGCTGCAAAGCCTCCTCCGTCACACGACTGGCCGGCTCAACCTCGATCCCAACCTGGAGACGCAGAGTAAGACTGTAGTCCCCGCAGATCTTGAACAGCTCGCCAACTACCTCAGCCAGATTCTGAAGCTCGCCGCTCTCAAGCGTCGCCTCAGCGCGCAGCGGTAACACGTAAGCCGCGGGCTGCTCACGCGCGGTGCTGACACCTGCCACCCCCATGAGCGTGCTCTGCAGGCCAGCCACCATTACCGGCTCCTGGCGCATCACCTGGATCTTCACTCCCCGCGCCCCCGCATAGTCACACGGCCAG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGGGGTCTCGATCCGCTAGAGGATACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 12 4095065-4091629 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNIM01000001.1 Thermogemmatispora carboxidivorans strain PM5 N688DRAFT_scf7180000000002_quiver_dupTrim_7460.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 4095064 37 100.0 36 ..................................... TACGACTCAACCTGGCAGGACTTCTTTGGGTCGCTC 4094991 37 100.0 37 ..................................... CGACGAGCAGCTCAGCTGTGGGCTTGCTGCTTAGGAC 4094917 37 100.0 38 ..................................... TACGTGATCCTCAAGCGGAAATCTATCGGGAGGACATA 4094842 37 100.0 38 ..................................... CTTTCATATTGTCGTACGTGGAGGCACTGGTATCACCG 4094767 37 100.0 35 ..................................... TCAGACAACGACAAGACAGGGCATGGCAAACAAGA 4094695 37 100.0 36 ..................................... CGGCGTACAGCATTCGTTACCTGACAGGTCAGGTGA 4094622 37 100.0 36 ..................................... TTGATGAGTATCGCCGTACCCCGCAGAAGCATAATC 4094549 37 100.0 36 ..................................... AGAGCGGCAGGTACGGCTCATTCAGGCGCCGGAGCC 4094476 37 100.0 37 ..................................... TGTCAGCGCTTTGGGGCGGTATGACCGGATGCCGCTG 4094402 37 100.0 36 ..................................... CCTTCATATGTAAAGTACTTTATGTCCACCCCCTTC 4094329 37 100.0 37 ..................................... GGATGACGTCTTGCCGATGAGACGGAGTTTTTCGGTG 4094255 37 100.0 36 ..................................... TCTCAGGGGGTGCGAAGGGACAAGATAACGTAGCAT 4094182 37 100.0 38 ..................................... ATGCCGCGCGGATGGCCGCGCGTGCGTTGGGAGGCTGC 4094107 37 100.0 40 ..................................... ATCGCAGGGGGATATCGGCGCCGGTGGCAGAAGTGGCCCC 4094030 37 100.0 40 ..................................... GATCGAGAGAGAGCTGATCAAGCAGCAGGGACTGTAGCAA 4093953 37 100.0 36 ..................................... GGACGCGGCTGAGCTGCTCACCGGGCAAACAACAAA 4093880 37 100.0 37 ..................................... TGTCAGCGCTTTGGGGCGGTATGACCGGATGCCGCTG 4093806 37 100.0 39 ..................................... CAGAAATGTGCGCTTGAGTCTGATCAAGCGCGTAGAAAG 4093730 37 100.0 42 ..................................... GCATCAGAAATCACGGTGATCTCGCGCGAGAGCCGTTCTTGA 4093651 37 100.0 38 ..................................... GGTCAAAGAGGGGGCCACTCATGGTACGCCAGGCGAGA 4093576 37 100.0 36 ..................................... AGCGTTTTGCCCCTCGTTTTGAGCGCTGGCAAAACC 4093503 37 100.0 36 ..................................... GCGGTCTATAGACCCGTCCGAATTGATATGCTGAGC 4093430 37 100.0 37 ..................................... AACCAGAGGGGAAAGAGGAGAAAGAACAGACACGCGA 4093356 37 100.0 38 ..................................... GGCTTTGAATAGCCTTGCGTTCCTTGACGATCTGCCCA 4093281 37 100.0 36 ..................................... GCATTGGCGGCAATGATAATGCGGGCGGCGGTCATG 4093208 37 100.0 37 ..................................... GGCCGAGCGCATTGCCACCAAAAGCACGCTCTAACCA 4093134 37 100.0 36 ..................................... AGTCGAGGCTATCGACAAAAAATCAACGGCTCCAAA 4093061 37 100.0 36 ..................................... ATAGTGTGTATCGACTGCTAGAGCATGTCGATGACG 4092988 37 100.0 35 ..................................... GTGTCAGCGCCGACCTGAACGTATGCCGGGTGTAA 4092916 37 100.0 37 ..................................... TTTGAATTGCTGAGCTGCCGTGTGCTCTTGCGACCAG 4092842 37 100.0 37 ..................................... TTTTTTGGGGCGCTACTTTCAATCGCACGCGCGAGCT 4092768 37 100.0 35 ..................................... ATCTGCTGAGCACAGGTCTCGTGAACACGCTGTAG 4092696 37 100.0 37 ..................................... GGCTGGGTCCGCTTGAGACGATCGCACTGCACGAATC 4092622 37 100.0 37 ..................................... CTTCAATTTGAGATGGATACCGCGCATGCCGGCGATA 4092548 37 100.0 36 ..................................... GGAGAGACCGATGGAGATCCGGGAAGATTCGGAAGG 4092475 37 100.0 36 ..................................... GGAGAGACCGATGGAGATCCGGGAAGATTCGGAAGG 4092402 37 100.0 37 ..................................... TGTCTCTTCCTCTCGCCGCAGATCTGACTCTTGATGA 4092328 37 100.0 37 ..................................... CAATACCGTTGAAGTGACGCGTTGTTTCGGCAATTGC 4092254 37 100.0 35 ..................................... GTCAATACTCGACTTGAACTCACCAGGAACCTGCC 4092182 37 100.0 36 ..................................... AAAAGTACTACTCGTGAGTCCTAGGGAAGGATGTAC 4092109 37 100.0 39 ..................................... AATACAGCATGGCTCTGGCGCCTCTTTGTGGCGCAAGCT 4092033 37 94.6 36 .....................AC.............. ACACGGCAACAAGCTCATCTACGTCTCTGACGGCAT 4091960 37 94.6 36 .....................AC.............. ACACGGCAACAAGCTCATCTACGTCTCTGACGGCAT 4091887 37 94.6 36 .....................AC.............. CTGGGCCAGGACCGACTTCACGACGGGCAGCCCTGT 4091814 37 94.6 38 .....................AC.............. CTGTGGTGAGCTGGCTCCGGAACACTCCATCCCAACAA 4091739 37 100.0 37 ..................................... CGATGGAAGGTGGGGCGGAAGGCCGTCATGAGGCCGC 4091665 37 97.3 0 .......................A............. | ========== ====== ====== ====== ===================================== ========================================== ================== 47 37 99.5 37 GTGGCAGGGGAGTCGATCCGCTAGAGGATACTGAAAG # Left flank : CCCGGTGTCAAGTCAAGGGGGATACGGTGGATGCACCTCTGATGCTGTTTGCCGTTGATGGCTGGACTGGATTGGATCGGACCGAACTAGCTGAGCGGGGACAGATGAGAGCGGATGGCCTGGCTCTCTGCTGTCCCCGCCTTCGTTGTGGCTGGGGGAGTGGGGTGGGGGAAGGGGAAGAGATCAGGGGGGACGTGGAAAGGCCCTTTTGAGGGGCTGATTCGAAACTCTCCGAGAGCACTCCCGAAATGCGGTCAGATTCTGACCGCATTTCCCTGTGATCGCGCATCTTCTGCTCTTTTTGTGATTGAAAGTATGATGATGCTTTCTCGAAACTCGCCCCTTGCGGCTTGCAAAAAACGAGTTTCGAGAAAGGTCGTGATACGATAGATTCTTGACGGCTGGAGGAGGGAAAAACGAGGCTCTCAGATGCCAAAAATGGGGCCTCGTTCGTTATAGAATAGGTGAGAAGTATCCCCGATGCTCCTCCGCCGGCTGCG # Right flank : ACCTGGAGCCGGAGATAGCACTACGAATCTCCCCTGCCACCCCTGGCAGATTATGGCGTAGCGCATAATCACTCACCAGACAAACCCTTGGCCCCAGCTCCTGCAAGGGATGCCCGGTTTGCTTATAGTCCTGCTCAACAGGATAGGTACCGACGGCGAGCAGGTTGCCATCCTCGTCCTCAACAAGCAGCGGCACCGAGTGACCAGCCAGCCAACCTGGTTGCTGGCAACGGTAGCCCTGCAGTCTCAAAAACTGAGCCAGGTCCCCAAGCTGTCGCCTCTGCTCCTCCAGGGAGAAGGCCGCCGGCGCTCGCTGCTCGACAATCGCCTCCAGCAGGCGCCGGCCAAGATGGCGGTCAAGACGATAGTGCAGCATGCGATTGCCATAGTTGCGCAAACAACGATAACAGGACTGCTCACAGCTCTCTGGGCACTCCTTGAGAATCTGTAGCGTCATCTCGAGCAACTGCTTGATCTCCTGACCTACCTGGGTGGCATAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGGGGAGTCGATCCGCTAGAGGATACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 13 4298912-4299392 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNIM01000001.1 Thermogemmatispora carboxidivorans strain PM5 N688DRAFT_scf7180000000002_quiver_dupTrim_7460.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 4298912 37 100.0 39 ..................................... TGGTAATTTCCTCTGCTCCCTGGTCCAGAAATCTTCCCA 4298988 37 100.0 36 ..................................... CGGCACAAGGAGATCGTCCCGATGCGACAGCGCTTG 4299061 37 100.0 37 ..................................... ATCAGCCGCTGGGGTATACCGATGCACAATAGCTGGC 4299135 37 97.3 39 .........C........................... GATCGTTAACACGGTACCGATCGCTAAGCCCTGGCTATT 4299211 37 97.3 36 .........C........................... CCATCAACTCACGCAGATCCTCAGCCAGAGCACAGC 4299284 37 86.5 35 .........CT...........G..T..........T GAGCAGCGCGAGGTCAAAGCGCTGGTTATCAGTGC 4299356 37 81.1 0 .....C...C.G..........G..T....C.G.... | ========== ====== ====== ====== ===================================== ======================================= ================== 7 37 94.6 37 GTCAGAAAGACCCTTTAGCCCGTTTAGGGATTAGAAC # Left flank : GGACGGCGCGGCGGCTCGTTCGCTAGTGTTGCTTCTGCGCTGGCCGTGTGAGCCTCGGAGAGCAGGGCAGGAGCGACCCATCTACCGTCTATGGCCTGGCCTACGCCGGCAGTCGTTGCGGTTTCCTCCCATTGCTGACCGCTGGCTTGCGCTCACTGAATTACTCGCCTCACTCACATGCTTCGCCCTCTTCAGCACAGGGCAGTGACCTGCCAGTACTGCAGGGTCGAGCCATCTTGGACCCACGAACTAAAAATATCCTTTGCTCTCCTAGAGAGAGAAATATTCCTCAAGTCATTGTTGCCGTTGGTGCTCGTCGCTTCGAGCATCTCGGCACCCGGGATCTCACGCAGCGATCCTCGAATGGCTTTTCATGCGTCTCCAGGGCCATAGTGGCTGGCATCATTACCGCGCAAAAACGGTCACTGATGACCGCTTTTTTGGGATGCTCGAAAAAGCTTGACAGAGGCCGCTCCAGATGCTACATTAGAGAGGGTGCT # Right flank : CATCAAGGAGACTAGAGGGCCTGCCTGGAAGCTGAGATCAAGCTTCAGCCTCTTGCTTCCCCTCCCTTTGGCCTGGCATCCCAGGCAGGCCCCATCTTCATTACAGAAGCTGCTTGCCTCGCCCGGCCTGGTCTAGAGAGTGCGCCCGCGCCCGCGTCCCGGCTGGTTCAGCAACAACCGCAGGCGCGCCACCTCCGGCGCACTGCCAAACGGCGAAGCCGCCAGCTGCTCCACGAGCCGGCGCGCCCGGTCCAGATTCACCTGACTACGGATCGCGTGCGCCACAGGTACCGCCTCCAGGCCCAGCGCCGCCGCCTGCTCATACTCGCCCAGCCGCGCATAGGCCTCCGCCGCCAACAGCTCTGCATAGACATTGGCGCGCGTCATACCGCTCAACTGGCGCGTTGGCAGACTATCCAACGCCTCCCGAGGCCAGTTGAGCGCCAACAGCACCGCGGCCCGATCAATCTGAAAACGCTCCCTACTCAAAGGCAGATGAT # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGACCCTTTAGCCCGTTTAGGGATTAGAAC # Alternate repeat : GTCAGAAAGCCCCTTTAGCCCGTTTAGGGATTAGAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //