Array 1 540144-539790 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQVX01000003.1 Clostridium botulinum strain It29 CbotD0002-I29_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 540143 28 100.0 39 ............................ CAAGGGTATTTAAAAGCAATATAGAAGTAATATTATAGA 540076 28 100.0 36 ............................ ATATGATTTCTTAGTAGATATGCAAACGGGAGATGC 540012 28 100.0 36 ............................ TAATCAAGATTTAACCATTCTTTAGCTTCTCGTAGT 539948 28 92.9 36 .............AG............. TTGGAAAGCTTACTAGATTTCTTACCTATATCGGGT 539884 28 92.9 37 ......A............C........ AAGTTAATTCTTTTGAATTTAATATCATCTGTTACAC 539819 28 89.3 0 ......A......A.............A | TA [539794] ========== ====== ====== ====== ============================ ======================================= ================== 6 28 95.8 37 TGAACATTAACATGAGATGTATTTAAAT # Left flank : TTATAACAATTGCAGGATCAGGAATATTGTATAAAAATTATTTTACTAATATTGATTCAAATAGCTATTTATCAAGCAAAGATGAATCTGAAAGAAGTATTTTCTGTCATGAAGATGATAAAAGCAGTAAAAATACCCACAGTTTTGATTTTAAAAAATTCGATGGCAAGTGGTCTTTAATGGAATTTACATCAAGCAAAGGCAAGCGGTAAATTTGATGTAAGTGTAAATTCAGATAGAAACATAGATATTTCTCATATAGATTTTTTTGATTAATTATATGCACTGATGCTATGAATAAAAACAAAAAAATTCTAAAAGTTTTTCCAACCGCATTTAATTTTAAAACCTATCCTAAGCATTGCAATGTAAGGCTTAAGATAGGTTTTGTTTATGTTTTTCTGAAAAATCACAAATGGCTGGAAAAATTTTTTTAATCATTGTAAAATCAAATGCTATATGCTATTCTTAAAATTAAGGAATGGCTAATTTACTATGGA # Right flank : ATGGTAGTTGTAGCTTATGTTATAGCTATTATTTTTCAATATTTAGAGGAATATTTTTACATATGTAGAATATTTGTATATAGTCCCTTTAATTCATTATCAAATCTTTCTTGAATAAAAAGGAGCCTGTGTATGCAGTGGGGGCTCCTTTTTTATATTATTTGAAGGAATTTTTTAACATTTATAGAATATTAAATATAACGGCTTCCCAATAGGTTGATTATAGACCTCCTTGCTTAAGCAAAAAGAACCCCAATAAAAAGGGGTTCTTTTTGTATGGATTTATATATTGGTGCTATGTATTGGTCTATTTTTACTATATCCAGATGTAGAAAAGTTAATCAGTAAGAAATATATAAGATGTAAATTTTTGAATATATTTCTATAATGAGAGTACCTTATTTTTTATTTTTTTGATAAAAATTTTAAGAAAATTAGCAATTTATTAATAAAAATTTAAAATAATTATTTAATTTCATTTTAAAGTTGTATCAGAATGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 4470-4830 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQVX01000001.1 Clostridium botulinum strain It29 CbotD0002-I29_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 4470 29 100.0 37 ............................. CCATTTAGATATGCTTTGTATTTTTTTAATGTATTAA 4536 29 100.0 37 ............................. TTCTTTACATTTGATGTTATAGAACTTTCACTGTTAA 4602 29 100.0 36 ............................. TCTTTTTTAGTGGTCTTGTATCGTTATGAGCTTCTA 4667 29 93.1 37 ..............AG............. TCTAATTGTGTAGTATCAAATCCATTAGCCATAATTG 4733 29 93.1 38 ..............AG............. AGTCTAATTATTATAACAGCATTTTCTGTGTAAGGCTG 4800 29 89.7 0 .......A......A.............A | TA [4822] ========== ====== ====== ====== ============================= ====================================== ================== 6 29 96.0 37 TTGAACATTAACATGAGATGTATTTAAAT # Left flank : CTAATGCTATTGTTAAAGGACTAGTAGGGAAAACTACAAGCAATAGCACACCAAGCGAACCAACAAATAACAATAATAGTTGGATTAATTTAGATGGAAGAACAGGTACAATAAATACACCAAGCGGTGTAAATGTTAGAGAAAAGAAATCAACTTCTAGCAGAATATTAGGTGCTTTACCTAATAGTTCAAAGGTTAACTTATATCGTAAAGAAGGAGATTGGATACATATATATTATCCACCACATGGGGGTTATGTGTATGCTAAATATGTAAGATATTAAGTTTTAGAGGTATTTTCCTTCATGGAAATACCTTTTATTTTTCCAACCTACTTTAATTTTAAAACCTATCTTAGTCATTGCTATACAATGCTTTAGGGTAGGTTTTCTATATAAATTTTAAATTATCTCAATTGGTTGGAAAATTTTCTTTAGAATCTTGTAAAATCAATACTTCTATGTTATCCTTAAAAATAAGGAATGGCTATTTTACTATGA # Right flank : AATGGTAGTTGTAGCTTATGCCCTATAGCTATTATTTTTTGCATTTAAAGGAATTTTCTAACATTTATAGAATATTAAATATAACGGCTTCCCAATAGGTTAATTATAGACCTCCTTGCTTAAGCAAAAAGAACCCCAATAAAAAGGGGTTCTTTTTGCATGGGATTTTCTATATATTGGTGCTATGTTTTGGTCTATTTTTATTATATCCAGGTATAATAATCTTAATCATGTATAGAGGAATTATATGAAATATGTAGAATAATACAAATTAAGTTCGCAACTATGCTTAATTACATAAGCACTAAGTCATAAACTTAAAGCCCTGGGATAAACCAGGGCTCTTTTTAAAATTACTCTTTGCTATCTTTTTTCATTTATATTAAGATATTCCATTAATCCAGCCTGTAATATTTGCGAAAAATTAACTTTGTTTTCCTCAGCCATTTTATTCAACCATGAAGGTATTGTCAATGTTTTTTTTACTGCTTTATTATCGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : TTGAACATTAACATAGGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 97008-97496 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQVX01000001.1 Clostridium botulinum strain It29 CbotD0002-I29_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 97008 30 100.0 35 .............................. GTAGTTAAAATTGGTTCATATTCTACACCTATTTT 97073 30 96.7 36 ........A..................... TAGTTAATATCCTCGAGAGTTCTTAACCAAAAATTC 97139 30 100.0 35 .............................. CCTAATTGTTGAACATTAGTATTACTCTTTTGTGA 97204 30 100.0 36 .............................. TATACTTAATCATTAATTCCCTAAATAGAGAAGTCA 97270 30 90.0 34 ........T.......A..C.......... ATTCTTTATAGTATTGTAGTAATAATTCATTAAA 97334 30 93.3 35 ........T.......G............. TTTTGCTTATTTTACTTGTGCATTTACTACAATAT 97399 30 93.3 36 ........A.......A............. TTAAAACCTTGAAAATCTTCTAAAACTATAATGTTA 97465 30 86.7 0 ........T......GA............A | TA [97489] ========== ====== ====== ====== ============================== ==================================== ================== 8 30 95.0 35 GTTGAACAGTAACATATGATGTATTTAAAT # Left flank : TATGGCGTGTCGCAATTGTGGTTATACCATACCATATAATAATTGATTTTAATAACGATTACTAGATAAAAGAAAAAAGATTATTTTTTTATTATTCAAAGGAATTTTTTACATTTGTAGAATATTAAATACAATGCTTCCTAATAGGTTAAATATAAATGTACTTATTTAAACAAAAGAACCCCAATAAATGAGGTTCTTTTTGTATTGGTGCTGTATATTGGCTTATTTTTATTACATCCAGATGTAGAAAAATTAATCAATCAGAAATATATAAGATATTAAGTTTTAGAGGTATTTTCCTTCATGGAAATACCTTTTATTTTTCCAACCTACTTTAATTTTAAAACCTATCTTAGTCATTGCTATACAATGCTTTAGGGTAGGTTTTCTATATAAATTTTAAATTATCTCAATTGGTTGGAAAATTTTCTTTAGAATCTTGTAAAATCAATACTTCTATGTTATCCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : AATAGTAATTGTAGCCTATGCTATAGTTATTATTTTTTTATTATTCAAAGGAATTTTTTACATTTGTAGAATACTAAATATAAGATTTTCTATAAGGTATTGACCTTCTCCAAAATACAAAAGAACCCCAATAAACGGGGTTCTTTTTGCGTGGATTTATATATATTGGTATAGTGTCTTGGGCTGTTTTTATTATATCCAGATATAATAAATTTAATCACACATAAAGTTGTTACATAAGTTAAGCATTATGAGAATCATCTATAGTGTTAACTTTGTTGAACTCATTTAAAAAATCTTCATATAAGTTTTCCCTATGTTTTTGGCTTTGGCCTGTTATGATTTCAACTAATTTACAATGTTCTATAGCATTTTTTATGATAGTTCCCATATCTAAATTATCATTTGGTGATTCTAAATAACTAAGTTCACCCATAATTTTTTTACGTTGATTTTCAGGATATTTTGATATAGTATTTTGATAAGCTTCTATTATGGAT # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATATGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 200946-201170 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQVX01000001.1 Clostridium botulinum strain It29 CbotD0002-I29_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 200946 30 96.7 35 ............G................. TGAAAAACATTAGAACCACATCCACAAGGGTTTCT 201011 30 100.0 35 .............................. GCTAAATTCTCATAAGAACCACGCCATCTGTCCTC 201076 30 96.7 35 ........T..................... TTATGATATGATTTTATTTGTTTAAGAGTATCTGC 201141 30 93.3 0 ........T................C.... | ========== ====== ====== ====== ============================== =================================== ================== 4 30 96.7 35 GTTGAACAATAACATGAGATGTATTTAAAT # Left flank : ATCCCGCATGGCATCAATTTTATCATAGGCATAGGTTAATCCAATAGTTAAAAAAAGTTCTGCGGTTATATCAGAATGAGTAAGGGTGTAGCGTCCTCCTAGAATAGGTTCTGTATTAGTTACTCCATCTCTAAATTCCACTGAAAGTTTTTCAGGGTTCAATTTGCTCATTTAATCCCTTCCCGTACAATATTTCTCATAGAACTATTATATGATTAGGTTAAGGAAGTTGTCATTTAGGTAGCTATAAAATTTATTATAATATCATTAGCGCTATATAAATTTATAAAAAGAATATTAAAATAAAAGAAAAGAACAAAAATTTTTCCAACCGACTTTAAGTTGAAAATTTATGGAGACTATTGATATATAAGGGTTTAGGTTAGGTTTTTTATGTAAATTTGAAAATATCCTAATCGGTTGGAAAATTTTATTTATAACCTTGTAAAATCAATGGTTTTATGATATTCTTGAAATTAAGGAATGGCTATTTTACTATG # Right flank : TACTATATCTCCTCTTGTAGCGGGAGTTCCTATACCTGTTGAACATTTAAGTTCCTTTTAGGTGCAATTATTTTTGGGGTATTGACTTGTAGTCTAAAGTTGCACCATAAGAAGGTTCATTAAACACATGTGGAAGAACAAGTAATAGATACAGCACTTGCTATTGATACGGTGAATTGTATTACAAATAACGAAGGTTTTATTTAAAACTGTTCATATGGCTGGATTTAAGAAATATAATAGTGTCCTAAGTTGTATCATAACCTAAGTAAATTATAAAAATATATGTTTATATTTATTTTAAGACTATTGTATTAATATGATTCATCCAGATTTAATTGTGAGAAATTTCATTATAAACTTAATAGGGAAGTCTTAGATTTTTTATTGCATGAGATTATACGGAAAATATTAATTTTCACTATAACTTAACAAATGATTGATACAATTTTAAAAAAATCAGGACCTACAATGATAAAGTAGGTCCTGATTTTTATTAA # Questionable array : NO Score: 3.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 4 204961-205253 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQVX01000001.1 Clostridium botulinum strain It29 CbotD0002-I29_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 204961 30 100.0 35 .............................. CCTCATTTTTGAATTATGAATTACTTATTGTTTTG 205026 30 100.0 36 .............................. AATAGAAGGGCTTAACTATAGATTCCCGATACTTGA 205092 30 100.0 37 .............................. TAATCTTCTAAGTAAGGTATCATTACTGACTTAACCT 205159 30 100.0 35 .............................. ACTACCTAATGTTCTTTATTTTAAAATCACAAGTA 205224 30 86.7 0 ...A...........A....A........C | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 97.3 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : CAATACTAGGAGTAGCTAAAGGACTGCTGATGTATAGTACAAAATTGACATAATATGATATACAATGTTTGTGTTCATCAACTAAGAAAGACATTTCTACCTTTCTTAGTTGATGAACAATTTTCTTATTTAACGACTGAACTATAAAATCAAATAATTTTTCTAAATGCTGTATTATTCAGAAATGAACTTTACGGCATTTTTATGTCGCAATACAATTATATTGTAAAGTTAGATGTATTTAAGTAGTAAATATAAATCTGAGATTTAGTGTGAGGCGCTTACTCATTTGAGGAAGCGAGAAGGAGTTCTACTGACTGAATTTTTCCAGCCAAAATAAATTTTAAAACCTATTTTGAGCGTTGACACATAAGGCTTATGGTAGGTTTTTATTTTATATTTGTAAAAAAGCAAAACTACTTGGAAAACTTTCTTTAAAATCTTGTAAAATCAATGGTTATATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : CTGTTTAGTTACTGCAGATATTCGTTTTTAATATTAACATATGAATTAAAAATTAATATGATATATGACAAAAATTATTAAGAGTCTTAGAAGAATCTAAGGCTTTTTATTTTATGTAAAGTTTTAAAATGGAATATAATAGCTAATTAACTTATTATTAATAAAAATAATAATATTTTTAAAATATAAGTAGAATAATTAGTTATATTAACTAAAGGGTGTATGATATAATATAGATAAATTTGTATAAAGACATGTATAAATGGAATTTTGGGAACTGATTGTAACAGTAGATGATAGACCTTGGCTGCAAAATAATGGGGATTTAGATTTATTTACGCGTAGATTGGAAGATAATTTGGAAAAGAAATATAAAAAACTTTTTTAATGAAGATATAGATGTAAAGGATAAATTTATAAAGAGCATAGAGTTTAAAAATAGAGAGCCAATGCATTACGACTATAAAGGTATAAAGTTATTAGCAAATAAGGTAAGTATA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //