Array 1 5315-5953 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTA02000073.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0359 NODE_73_length_13494_cov_18.554650, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5315 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 5376 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 5437 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 5498 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 5560 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 5621 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 5682 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 5743 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 5804 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 5865 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 5926 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34746-31849 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTA02000046.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0359 NODE_46_length_43920_cov_20.030050, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34745 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 34684 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 34623 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 34562 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 34501 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 34440 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 34379 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 34318 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 34257 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 34196 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 34135 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 34074 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 34013 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 33952 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 33891 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 33830 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 33769 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 33708 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 33647 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 33586 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 33525 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 33464 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 33403 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 33342 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 33281 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 33220 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 33159 29 100.0 32 ............................. TTGCGCGCTGAGCGGGCAGAGTTACAGGAACG 33098 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 33037 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 32976 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 32915 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 32854 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 32793 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 32732 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 32671 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 32610 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 32549 29 100.0 32 ............................. CAGTGAAATAAAACCAACGCACTGGGTATCCC 32488 29 96.6 32 .......T..................... CCCACCGCCCAGCCCGGATATAGTGAACTGGT 32427 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 32366 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 32305 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 32244 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 32183 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 32122 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 32061 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 32000 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 31939 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 31878 29 96.6 0 ............T................ | A [31851] ========== ====== ====== ====== ============================= ================================ ================== 48 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //