Array 1 1044290-1042604 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACJN02000003.1 Desulfonatronospira thiodismutans ASO3-1 ctg19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1044289 37 100.0 35 ..................................... ATTTGTCTGGACTACTGCACGCCAAAAATCCCCAT 1044217 37 100.0 34 ..................................... ATGTGCTCACACATCACCCACCGCTTTCCCCTTG 1044146 37 100.0 35 ..................................... TGCAGGTGGGGCAGACGACCTTTGTTTTGGGCAGC 1044074 37 100.0 35 ..................................... GCCCCATTGCGGGTGGCAAACAGCGTATGGGCACA 1044002 37 100.0 35 ..................................... GTCGCACAGGTAGCTCAGGGCGACCCACAGGGCAA 1043930 37 100.0 35 ..................................... AATTATCACGCACTCGTCATCTCGTATTCCCATAC 1043858 37 100.0 32 ..................................... ATATGGGCTATAAGTGGGAGCCCAGACCCGGC 1043789 37 100.0 34 ..................................... AAAACGCACCACCACATGATCGCCTATCGCAAAG 1043718 37 100.0 35 ..................................... TACAGTTTACGATCAATCCGGCAACGAAAATAACG 1043646 37 100.0 36 ..................................... CCGCATGGGTATCTGACTCCGGTGGAGACCGAATTG 1043573 37 100.0 35 ..................................... ACACCAGCAACGATGAAAATGCCCAGGGCGCTCTG 1043501 37 100.0 35 ..................................... TGGTGGTTATAGGGCAGGGCTTCACCGTCAATCTC 1043429 37 100.0 34 ..................................... ACATTACAAACAGATGATGAAGCTGAAATCTATC 1043358 37 97.3 34 ..............G...................... GTGGTTCCGAAGAACACGACTTTGCGTGGGTGGT 1043287 37 97.3 34 ..........................C.......... CCGTCCAGCATGTCCCGGATGGTGTCAGCATTTA 1043216 37 91.9 34 ..............T.............T.......G ATTCAGGCCATGTATCACTGGAATATGCGCTTTA 1043145 37 94.6 36 ......A.......G...................... TGGCTCAACTGCAAGGATTTCAAGCGTGAAAAGCTG 1043072 37 94.6 35 ......G........T..................... TACCGTGCCGTGTACCTCCGTGAGTATACGGACAA 1043000 37 100.0 35 ..................................... ACGGTTTGCTTGGTTTCAATTCTGGCACCGGGCAC 1042928 37 97.3 35 ..............G...................... AACCCTGGCACTGGTGAATATGAGGGCGGCGGCGA 1042856 37 94.6 35 ...........G..G...................... ATTATATCGACAACCGCTTCGCCGTAGTCCTCCCA 1042784 37 100.0 35 ..................................... ACCGCCTCAAAGCTCTCGCAGCAGGTGAGGCAGAA 1042712 37 91.9 35 ..............GTT.................... TTGAAGGTCATTGTGGCCGATTCCTTGGTCTTGAG 1042640 37 89.2 0 ..............G...................TTG | ========== ====== ====== ====== ===================================== ==================================== ================== 24 37 97.9 35 GTCTCATCCACATTAAAAAATGTGGCTCCATTGAAGC # Left flank : TTGTCCAGAACCTGGGTCAGCGCAACTCCTTTTGTGACAACCAGGCATCACCGCAAGGGACGTGGGAGTTATTTAGACTGGCTTACACAGGAGATATTACTTGAATGTGAGTACCATGGTTTGCCTGAACCTGCTTCTGTAAACTGGATACAATGGACAATCACCGGTCCAAAACCTCTGCGCTGGATGGAATTTGCAAGGGGCAAGAGGGATGAGAGGCCATTCAGAGGACACGGATGTATAATACACTTCAACACAGCTGTGCCTGGGCCATTTGCTTTAGGTGCAAGGTGCCATTTCGGCTTGGGGCTTTTTCAACCTGTAGAATAGCCTGGTGCGAACCCCAAGCAGTTGGAAATCATAGGTACGTTCGCGCAGCAATAAAATCAGGTAGTTATAAGAAACATTAGCTCTTTGACAATTAAATATCTCAGGTTTTGAAAGGGGTTCGCGTAGCAGGGCTCGTAACACCCCAAATGACGGGGTTTTTCATGAAGACA # Right flank : AAGTCAGGCATAGTTTTCAGACTGATTACCTGAACACTACTAACCCCGGTTGGAGGCTAATCCCTGGCCCCTTTATTTGCTAAGGCTGGCGGGGTTGCCCTGCACCCAGGCTATATGAAGAAGCGTACCTGAAAGGGAGCCTGCTGAGTTTAAGATTTCTTTGCTTGCCCTGCCGCCCATGAGTTCGGCAAAAGCCGCATAGTCCTGGAAGCCTTCATGGGACTGGCTGAAGGAGTGAACCAGCATGAGGGCATGCTGTGCGTTGAATCTCTGGGCCTCAATGAGTGCCGATGCTGTGCGGTGCAAAAGCTGATAGCGGATGGAGAGGGGGACTGCGTCCAGTTCAAGCAGCCTTTGCAGAAACTCAAGGCGAGCTGTCTTGCCCGGGTTGGACTGGGCCTGCCATTCCTGTATCGTGGGGCCAAATGACTCGGAAACCTTGCCCTCTACAGCAATGGAAATGAGCTTCCCTTGTGAACGGGCAAGGACCCAGATATCAT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCATCCACATTAAAAAATGTGGCTCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 277891-280378 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACJN02000002.1 Desulfonatronospira thiodismutans ASO3-1 ctg20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 277891 28 100.0 32 ............................ CTAAAGGATTTTCCCGGCAGTGCTTGGTCTCT 277951 28 100.0 32 ............................ GACTAATTAAGTCGGGTTTTGTATGACCTCCC 278011 28 100.0 32 ............................ TGTCCAGCTCATTGTACAGCTTCTGAGCCTTG 278071 28 100.0 32 ............................ AGCAAGCCCCCAACAGCATCAATGTGCACTGC 278131 28 100.0 32 ............................ GTTAATCGTTGATTAGTGGGACAAACGAAAAT 278191 28 100.0 32 ............................ TTCAGGGAGCGCTTTCACCTTGCCCACACACA 278251 28 100.0 32 ............................ TTGGCGTAAATTCGGGTTTTGTCTAGCCAAAA 278311 28 100.0 32 ............................ TTAAAATTTTAGTCTTTCTTGAGGGTCCGAGT 278371 28 100.0 32 ............................ ACACTGCAGTACGGAAAAAATAAACTATAGTA 278431 28 100.0 32 ............................ TATTGGATTAATCTTTAACTAGGAGGTCTAAA 278491 28 100.0 32 ............................ ACATTGGAGGATAGCATGGCTAAAAGGTTCTA 278551 28 100.0 32 ............................ TTGAAGGAAGCACAAGATCTTTATGGACTAAC 278611 28 100.0 32 ............................ ATCCCAATTGAAAGCGTCCCTTAAAGAAGAGT 278671 28 100.0 32 ............................ AATGATTTTAAAGGTTTATTGAGAGTACAATT 278731 28 100.0 32 ............................ AGAAAACAAGTCGGAACATTACACAGCTTTGC 278791 28 100.0 32 ............................ TTCCAAGTTTAACCTGGTTTTAAAATTTCTCA 278851 28 100.0 32 ............................ TGTAAGGACTTTAAAGCCCTTACGCATACTCC 278911 28 100.0 32 ............................ AAAGTAACAGAAGGATTTTCCAGAAAATCCTT 278971 28 100.0 32 ............................ TTAAATATTCGATAATAGCATGGCAAAACTCA 279031 28 100.0 32 ............................ CAAATGATTGAGTTATATTTTTCTTGCTCAAC 279091 28 100.0 32 ............................ AGTACCATTTTTAGACCTCCAATAGTTAAAGA 279151 28 100.0 32 ............................ ATAGCCGAAAATTTGTAAAGGACAATTTTTAA 279211 28 100.0 32 ............................ TTTTTTTTTTTTTTCGGGAAACAATACTATGA 279271 28 100.0 32 ............................ GGTACGCAAAAGCGCTTTAAAGCCTTTACAGG 279331 28 100.0 32 ............................ TACTCAAGAATTTTTGGATATCATGGCGGACT 279391 28 100.0 32 ............................ AGCCGCGGGGAGGATTCGAACCTCCATCCCCG 279451 28 100.0 32 ............................ ACAGGAAGAATGCTGGGCAGAAATAGAGGATC 279511 28 100.0 32 ............................ TCGATCTCGCGCAAGCCTTCCTCAGTATTGTC 279571 28 100.0 32 ............................ CGCAGTCGTGGCACGCACGGGTATAGGTCCGG 279631 28 100.0 32 ............................ CCAGCCGGGAACCGGAGCGTGGGACATGAAAG 279691 28 100.0 32 ............................ ATCACCTGTGGCAGACAATCAAAACTGCAGGT 279751 28 100.0 32 ............................ GTAAAGGACGGACCCATATTGTCGTTTGAAAG 279811 28 100.0 32 ............................ TGGCCGAGGTGTCGGCAAACATAGTCAATCAG 279871 28 100.0 32 ............................ AGGGACTTGTAAAGTTTACATAATTCTATAAT 279931 28 100.0 32 ............................ TACCTGAAGAAAGGGGTTTTACGGCGCAGATG 279991 28 100.0 32 ............................ TGGTGATCTTTGACTATCGGACCGCCGAACCT 280051 28 100.0 32 ............................ GCCTTGACCGGGATAATACCTACTTGCTGCTG 280111 28 100.0 32 ............................ CTGCTCTGTGCGGCGCAGGGAGCCTAGGTTGG 280171 28 100.0 32 ............................ CATGGCTAAAGGTTAATCAAATAAGTCAAGCC 280231 28 100.0 32 ............................ CTTTTCTTTTCGCTTATTAACCTAGAAAAAAC 280291 28 100.0 32 ............................ TTCCTGGTACTACGTCCGGGAAAGGGAACTTA 280351 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 42 28 100.0 32 GTGATCCACCGCATAGGTGGCTAAGAAA # Left flank : TCTGTATGCGTGCCTGGCTTCCCGTTACAAAATTGATGAGTTTACCCGGGACCCTGGGCAGAAAAAAGGGGAAACCAAAGCACAGTTAATCAATTCGTACCTGGACCATGGGAATTACATAGCTTATGGGTATGCTGCGGTTACTCTTCATGGCTTGGGAATTCCTTTCTTTTTGCCTGTTTTGCACGGCAAGACAAGGCGCGGGGCCTTAGTTTTTGATGTGGCTGATTTATTTAAGGACTGGGTAGTGATGCCGGTTGCCTTTGATTGTGGCAGTCGGAAGGTTAAAAATTCTGAGTTTAGAGCTTTAATCATTCAGCAGGCACATGAGCGTTCTTTGCTTGATATGTTGTTTCAGTTCCTGTCAGACTTGGCCAAAAAAGATTGATAAATATCAATGACTTGCAATAATCTTGATTTGCAAATTGAAAATCAATGTATTTGAGAGTTTTTGAAGTGTATCTGCCTGTGACAATTAGGTTTTGTAACAATTTTATGGC # Right flank : ATGTTTCTGCGGGCATGGGGTCTGACCCGCGTAAGGTACATATTTTATTGTATTTATTGTTCAAAACAACCTGTATTTCGACCTTAGAATTAAAAAAATCAAGGAAATTCATCCTCAGCTGGACTTAAGGGCTTATAATATATAGATATTTTCTGCAAATCAGTCTCTTCAAATATCTGCCAGGCCAAGGTGTTCGGCCGGGATTGCGCTTGACCATACAGGGCGGGAGCTTCTTTCACAGTCATCTTTGAAACAAACCTGCCTACACCCTTTTTTATTGTCTCTATGAATCCATTGTCGCCTACAGCAAGTTCAGTACTCCATATTGAATCCCTCGATAAGATGCCTTTTCTAAGGGCTTCCCGAATCCATTTTTGATAAGACTTACTGAGGTGATCTTCCTCTAACCCCAATAGACGTGAAACTTCACTGCGTTTGATTATCTGGTAGCGTTTCTTGGGCCTGACAATCTCATGATAGCCGCCATGCTCCCATTTTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCCACCGCATAGGTGGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGATCCACCGTGTAGGTGGCTTAGAAG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 729341-730304 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACJN02000002.1 Desulfonatronospira thiodismutans ASO3-1 ctg20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 729341 36 100.0 35 .................................... CGTCACTCAGCATAAGTATAAACCTCCTAATTTCC 729412 36 100.0 36 .................................... CACTTTATCGAACGACCCCAGCAGTTCGTCTACTAT 729484 36 100.0 37 .................................... TCTCTCCTTTTTCTCCAGAAACTCTCCAGCTCATCAG 729557 36 100.0 34 .................................... TTGCCTCCTTCTTTTTAGCATCCGTTTCAGCATC 729627 36 100.0 37 .................................... TTCTCAAGCTCCTCAGCCGGGGGCATGAGGGGCTCAG 729700 36 100.0 34 .................................... TGATTTATTTTTGGATTTTAGGGTATATGCAAAC 729770 36 100.0 36 .................................... TCATACTGGGCTTCCCTAGGGAACAGAAAAGATTGG 729842 36 100.0 36 .................................... GGGCGGAAGATCGAAGCTTTCAAACGTAAACGCTGT 729914 36 100.0 35 .................................... AGGAAATATACCTTATATAGATTAAGGATGTCAAA 729985 36 100.0 35 .................................... TTGAGTTGTCTGTTGTTGTTCTTGGTTCTGAATCA 730056 36 100.0 37 .................................... AGCCTCAACTGATGATTACACCTCACGCACTGCATAC 730129 36 100.0 33 .................................... CCGGTGCATCCAGCGTTTATCAGCTTCTGCAGG 730198 36 100.0 35 .................................... CCAACCATACCCTCTTCCAGCTTTTTAGCTGCAAG 730269 36 97.2 0 ..........................T......... | ========== ====== ====== ====== ==================================== ===================================== ================== 14 36 99.8 35 GTCCGAAGGACTGGCAGGGTTTAGAACCATTGCGAC # Left flank : GCAAAAGCACAAATTGTAAGCACGTCCTGCAAAAAAGGAGTGTCTGGTGTCATCCCGGGGGGCTGCAATCCATAAAAGGATATGCAGTCACCCGGGAAAAAATCGACATTTGTCTGAGTATCATTGAAAAGGGTCTCTCGAGTTTCTTCGTGTTTTGAAAAATTTAATGCACAAAAAATGCCAAAATAAAAGGTTTGTTTTCCAGATAACGAATTTTTTGTTAAAAAGTATTTAAATTCAGATATTTACCTCTTAAAAAATTATAAAGCCATTGTTAAGACACACCTTTTGGGATTTTTGTAGAAACTCTCCAACCATCTGTTTTTATTGAATCTGGGTTAAAAAGGGTGAACCGGAGTAAATATTCATTTATTTCGGTATGTTAATTGGTTTTTGTCCCTCCAGAAAGCACTTTCAAATTTACCGGCAGGCAAAATCGGGGTAGGGTGAACTTTTTGCCTCTCAAAACCATTGACAGGAGCGGGTTTATAAGTCTAAGT # Right flank : CTTGTTGGGAGGTTGAGCCTGCCCGACAAAATTGCTTGGCCCCACGTTTCACAGGGATCCTGGTCCTAAAGAAGGTCTTATGACTGATCACAATGTCCAGGAGTTCTGGCCCGGACATAGGCCAGACCAACCACAGTCTCCCTTCTCTGGCAAGAAGACTGGCAGCAATTAAAAGCATTCTGCCCAGTGCCAGGCTTTGGCCATATAAAATTGCTTGAATTTTCCACTTCAGACGACATCAGAAAATCCTCTACCCTTCTGCGCCAACAATAAGTCCCTCATTTTATTTTTCGTAAGCTTCCACCCCCACTTAAGTAATAGGCATGGGGTTGTGCGTATAGTGAGGGGTATCTGTTCTGTTGCCCCTAAAATAAGATTTTTTGCAGCTGTAGCTGCTTGATTTACTTCAAAAAATGTCTGTTACAACACAGGCAGCAGAAAGGAGGTGTTGTATGACGTCTTCCGAACTTCAAACCGTAAATGACAGGAAAGTAGATATA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAAGGACTGGCAGGGTTTAGAACCATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 737408-736657 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACJN02000002.1 Desulfonatronospira thiodismutans ASO3-1 ctg20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 737407 36 97.2 36 .T.................................. TATTTCAAGGAGGACGTATACATTACAGTAGCTCAA 737335 36 100.0 36 .................................... CCTGGTAATTTCATGGAGGACCACGAGGTACCTCTT 737263 36 100.0 35 .................................... AAAGAATTAAAGATACTAAGGGGTCTTGAAGTCAT 737192 36 100.0 35 .................................... ATCAGAATTAAGAAAATTTTACTCAAACCCTAACA 737121 36 100.0 36 .................................... GATATTGAGGGCCTGGGTCTACACTCCCAGAAATAA 737049 36 100.0 35 .................................... AGCTCACCAGTCGTGTGCTCATCAAATGGGGCAAG 736978 36 100.0 35 .................................... GGTAAGGTAGAGGATTTTGCAGGGTAAGTAACACA 736907 36 100.0 36 .................................... CCAAGTAGCGACCCCGAGGTACTACAAAAGCTAAAA 736835 36 100.0 37 .................................... CGAAGGCCGCCGATACCGGCGGCTTTCGTATACATCA 736762 36 100.0 34 .................................... CTCTCTGAATGGAGAGATAGTATCATAGATAATT 736692 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 11 36 99.7 36 GCCGCAATGGTTCTAAACCCAGCCAGTCCTTCGGAC # Left flank : TCTAAGCTCCTTATATTTTATAAAAAATCATACATACAATGACAAAATTATCTTTTTACAAGCACCCTTCGAATGATCTCGATAGCAATTTTTTGAGCGCTGGGGTCCCTGGCAACTATCGACAGTACCTTAATGATATTGTTCATAATGTCCTCCTGTTCTCTTTATACTTTTTCCTTAACCTGGTTTGACACTTCAAGATCAGACTTGCCTTCAACCAAGACACTCGAAAGAAAGCTATCGAAGCATCCTGATGCCTTATTTTTTTATTAGGAAAGTTGTTTAAAGAATGAGTGCTGGTTACGGAATTTGAGACAAAGGATTTGTAAATATCGCCAGGCCAGACCGCATTAAGGCGGTCACTAAGTGGACCCACTTAAGCGATTATCAATTGTTCTAATCAGAGGATCATGAGGAGGAGTTGTTGTGGTGGCAATGAAGTGGGCCATTGAAAGCCGGTCAATGACAGACCATTCTGGGTAAGTGGATTAGATCCACTT # Right flank : ACTTAGACTTATAAACCCGCTCCTGTCAATGGTTTTGAGAGGCAAAAAGTTCACCCTACCCCGATTTTGCCTGCCGGTAAATTTGAAAGTGCTTTCTGGAGGGACAAAAATCAATTAACTTGCCGAAACAATTGAATATTTACTCCGGTTCACCCTTTTTAACCCAGATTCAATAAAAACAGATGGTTGGAGAGTTTCTACAAAAATCCCAAAAGGTGTGTCTTAACAATGGCTTTATAATTTTTTAAGAGGTAAATATCTGAATTTAAATACTTTTTAACAAAAAATTCGTTTACTGGAAAACAAACCTTTTATTTTGGCATATTTTGTGCTTAATAATTCAAAACACAAAAAAATCAAGTGAACCTTTTCAATAACACTCAGACAAATGTCGATTTTTCCCGGGTGACTGCATATCCTTTTATGGATTGCAGCCCCCCGGGATGACACCAGACACTCCTTTTTTGCAGGACGTGCTTACACTTTGTGCTTTTGCTCTA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGGTTCTAAACCCAGCCAGTCCTTCGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 4 1140480-1143097 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACJN02000002.1 Desulfonatronospira thiodismutans ASO3-1 ctg20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1140480 32 100.0 35 ................................ AAGTTTTTGCTGAGGATAACCCCCAGCTCATGCTG 1140547 32 100.0 34 ................................ GATTTTTTCCGGACAGGTATCCGCGACGGTGCCC 1140613 32 100.0 34 ................................ TTTTGCCCGGCTTGCCAGCCTGAGCAGGTATTGC 1140679 32 100.0 34 ................................ ACGCATATCTTAAGTGAATCAGCAGTAACTGTGT 1140745 32 100.0 34 ................................ CTTTTCTAGCACTCTGAGTGTGGCAGAATTATTG 1140811 32 100.0 35 ................................ ATATTCCAAGAGGGAGTCCCGGAGGTTATTCAGGC 1140878 32 100.0 35 ................................ GGGGTCGGTACCCAGGGCGGAATTGAGCTGAACAT 1140945 32 100.0 34 ................................ GGTTAATCTCAGATCATTAACACAATAGGTCTCA 1141011 32 100.0 34 ................................ TGCCTAGAATGTTTCATGAGAGGCCGGCTGCAAG 1141077 32 100.0 35 ................................ AAGAATACATAAGGAACCTCAGGAAAGAGCGTGAC 1141144 32 100.0 34 ................................ GTTATACGTCTTGCCGCAGAACTGCTCCTTGCAG 1141210 32 100.0 34 ................................ AAATTGTTCAGCTGCAGCCTGCTGGATTGCTGGT 1141276 32 100.0 35 ................................ AGGCTGGGATAGTCCGGGAGCACCTGGAGCAGCGG 1141343 32 100.0 34 ................................ GATTTTTTCCGGACAGGTATCCGCGACGGTGCCC 1141409 32 100.0 34 ................................ AGGGACAAGAGTTACAAGCTGAATCGGCAACAAC 1141475 32 100.0 35 ................................ TCCATGAGGCAATTGAAACATTCCATACCTTATCT 1141542 32 100.0 35 ................................ ATGAAAGTGACTATGGAAAAGGTACGGTTTATGGA 1141609 32 100.0 35 ................................ TGGGCAAGGGTGGATTCGCCGGGCTGGTCGGTCGA 1141676 32 100.0 34 ................................ AGGTGTCCAGGGATCGGCAGTCCAGACGCCCGGA 1141742 32 100.0 33 ................................ TTTCCAGGCCACATAGATCCCTCGCTATCTGGA 1141807 32 100.0 34 ................................ AGGGACCACAGTTCCCTTGGAGGGATTGATAATC 1141873 32 100.0 35 ................................ ACGTTGTGCCCGATCCAGGTTGCCGGTTTGTAGAA 1141940 32 100.0 35 ................................ CTGCCAGTCAATATAATAGTTCCCACACTCGTCGC 1142007 32 100.0 33 ................................ ATCTGCGCTAGCAGGTCCGCAATACTCGCCTCG 1142072 32 100.0 33 ................................ TGCCAGGTTGCGCCGTATCCACGGGCTGACGAG 1142137 32 100.0 34 ................................ TCCGGTTCTCTGGGACAGACCACCGTGGCTGTGA 1142203 32 100.0 34 ................................ AGCCTCAGCCATAAACCAGTCAGAATCCTCTAAA 1142269 32 100.0 35 ................................ ATGCCTACTGGCCGCCGCCTTCGGGTCCTGGAGTG 1142336 32 100.0 34 ................................ TCATGCTTCTACCAACGGGGTTCCGGTGAAGGAT 1142402 32 100.0 35 ................................ TCTGTATAAAAAATATGCAACCAGCACGGCCCAAA 1142469 32 100.0 34 ................................ AACAGATCTATCATCGACAGGCCTAACTGGACAG 1142535 32 100.0 34 ................................ TGAATAAGGCTGTAAAGGCTTTAAAGCACTTTTG 1142601 32 100.0 34 ................................ AACAGAAAAGGAAATAGTTGCTGCTGCGTATGAT 1142667 32 100.0 35 ................................ TGGCAGATCATGGTGTACGGGCATGTCCTGCATAG 1142734 32 100.0 35 ................................ AGTACAGAATAGCTTGGAAAGCAATCCTGAATAAG 1142801 32 100.0 35 ................................ TGCAACAGCGCCAGGTCTGAGCTTGATGCATCCAC 1142868 32 100.0 33 ................................ CGTCTATGCCAAGAAATGAGGCTATATCGTCAA 1142933 32 100.0 35 ................................ CAGGTCACCCGTGGTCTGGCTCTCGTTTCGCCTGC 1143000 32 100.0 34 ................................ GCTAAGCTATCGGCCAAAGGCGCCGGAATAAGAG 1143066 32 90.6 0 .............................GCA | ========== ====== ====== ====== ================================ =================================== ================== 40 32 99.8 34 GTCGCCCCCTGCGCGGGGGCGTGGATTGAAAC # Left flank : TATCCGCCTTTTTTCTGGAAGTAAGTTATGATGGTGCTGGTAAGTTATGACGTGAGTTTTGAAGATCCAAGCGGCAAGAAAAGATTGCGCCGTATTGCCAAGGTTTGCGAAAACTTTGGGCAGCGAGTTCAATACTCTGTGTTTGAATGCGTGGTGGACCCAGTACAGTGGACAGCCTTCCGTGATCGACTGCTCAAGGAATATGATGAAGAAAAGGACAGTCTTCGTTTTTATTTCATGGGTAAAAACTGGCAGCGCAGAGTGGAACATCATGGAGTTGGCGAGATCTATGATCCGGAAAATGATGCCCTGATTTTGTGAGTTGCGAACCTAAAGCTCTCAGCATTTTGCCGGGGTATTCGCACTCGTATTTTGATCTTTTATTTTTGAGAGTTGTTGAACACATGCATCACCAAAACTCAAATCAACAGGATTCTTTATCATGGGTTCGCGGCTAAACGGCCTTGAACCCATGTACCCCGTGGCATTTGAGAGCCACT # Right flank : AGCTGACCGGATCTTTGATGCCGAAAGGCGTTAAGCACCATGCTGGAGGTCACTGAGCCGGATAGCTTTAAAGAAACCCTGTTCAACGGGCTGGGTCGGTCCCGGGCATTTGGTTGCGGGCTGATGCTGGTCAGAAGGTGCTAAGATGAAGCCAGATCTTGGTGAAAGTATTCTGTACCAGCCTGAAGACGGTAAATGCGCCCTTGATGTATCTCTAAAGGATGAAACAGTCTGGCTTACCTAGGCGCAGATGGTGGAGTTATTCCAGAGGGACAAGCGTACAATTTCCGAACACATCCGAAATGTATTCAAGGAGGGCGAGTTGAGCGAGCAGGCAGTTGTCCGGAAATCCCGGACAACTGCCGCTGACGCTGACAAAAACTGTTATCCGTGGCATTTTGCCACGGCCTCATTGAAGCACAAATGATTTGTGCAGTTCTCCCGTCCCGGAGGTGGTCAATTTTCGATTGTCACAACCACCTGAATGTGCATTTGAAGGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTGCGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //