Array 1 209244-210004 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZCX01000004.1 Schleiferilactobacillus kimchicus JCM 15530 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 209244 28 100.0 33 ............................ CACCCCAGTCAGCACCGATGCGGTCCAAATCTG 209305 28 100.0 33 ............................ TAATGCCATTGTTATTCGAAAGGTCGACTACGT 209366 28 100.0 33 ............................ TGACTGTTCATATCACCCGTTGTAGACACATCC 209427 28 100.0 33 ............................ TATTTGATGGGGGCATTACGCTTTGACGTTGAG 209488 28 100.0 33 ............................ CGCAAACGCTTCAAATGTGGACTTGGTAAATTG 209549 28 100.0 33 ............................ TCCTTAATATCGTCAACTTTGGTAATCGTCGCT 209610 28 100.0 34 ............................ CAAAACGATTAATATGCGGACCGAATTGCTTGGA 209672 28 92.9 33 ...A.........T.............. CCAAACCGTTCAGAATATTGGTGATGGTAAAGC 209733 28 96.4 33 .............T.............. CATCTCTACACTTAACGCCGGAGACCGGGTTAA 209794 28 92.9 33 ..............C.........G... TCAGAGCTTGCAAAAAGTGGACCAAATGAGTGT 209855 28 96.4 33 ..............C............. CGGGCTATCCGATACCAGCCTCGACACTGCCAA 209916 28 96.4 33 ..............C............. TGACGCGCTGTCTAACTCGATCCGCGAGCTATC 209977 28 92.9 0 .............T.............T | ========== ====== ====== ====== ============================ ================================== ================== 13 28 97.5 33 GTAGTCTCCGCACCAGCGGAGGTGATCC # Left flank : CGAGCTTAGAGATCAACTACCTGCAAGGCATTATTGATCAGCAAGCCAATAGACTGGACCAAACTTTTTCTAATGCAACTAACCTAGAACAAGTTTTGGACGCTGCCACTAGAGCTCAAACTGAGGCTCAACAGAGATTTACTCAACAATCACAACAATTTCAAGAACAGTTTGGTAGCTTGACCCAACAAATTGTTAAACTACAACAGACAGTAACTGAGTTACAGACAAACAAGTAGGAGGGACAGAAAATGAAAAACCCATTTAGCTTTCCAAATTATGACACCGCAAAATTGTACAACTCTTGGGGGTTAAAGATTGATTATATGGTTAATTGGTGCCTTACCCCAGAACAATATAAAGAGATTACAGGTATTGACTACACGGGAAAATAGTTGAAGTGATCGAAGTTATGGTGTAGTTTTAACACAGGATTCGAAACTCATAAAAATTGAGGTTACACCTTTTGGAAAATCCCGTTGTATCAATGATTATTTAGT # Right flank : TCCGGTGGGAATGTGCCAAGCCATTTGCTCATTATCGCTTACTAACTTTTAGTTTAAATTATTAATTAGAGGTGAAAATACTATAAAAATTAAAAGATCGTGATGTACAGAAAGGAAATAGTGATAAAATGAACATGCGTGGTAATGAGTGCGGCTATACTACTCTAAAATTTGATTTTTAGGCATTTACCACGTATAGCACTTATCTTAATTGGTAAGTGCTTTTCTTTTGCTTAGCACTATTGAACTCGAAATTAGGTTTTATGCGGTTGTATTGCTCAAAGTAATGGTGTATTTTAAAAATAAATTGTTTCTCATTAAAAAATGAGGGATATTCCTTTAAAGAAGCCGCTATATCAATGATTGTTTATTGGTACTCTCCGCACCCGCGGAGGTGATCCTTCTTCCTGCGAAAGTCCCTTTGTTTTTCTCAAGTACTCTCCGCACCCGCGGAGGTGATCCCAACCAAGAGGGTATCGACATGGATCAGCAGACGTACT # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCTCCGCACCAGCGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 271393-271971 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZCX01000002.1 Schleiferilactobacillus kimchicus JCM 15530 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 271393 29 96.6 32 ............................C AAGCTACCCAAATGGCGGCATTGCCAAAGGTC 271454 29 100.0 32 ............................. ATATTCTTGTTTGAAATAATCGGCCGGAATTG 271515 29 100.0 32 ............................. TTCCAGCACTATCAAATCACAGAACAAGGTAC 271576 29 100.0 32 ............................. GTGACTGGTCAATGGCAGCTTGCTTGGCGTCA 271637 29 100.0 32 ............................. ACAATCGATCTGAGTTGGATAGCGATTCGACA 271698 29 100.0 32 ............................. CATCTTCTTGACTGGTTCGTTATACCCAAAAG 271759 29 89.7 32 ............GG..........G.... AATCCGTGACAGTGGTTTTTAGAAAAATTTGC 271820 29 69.0 93 ........C..CTG.......A..G.TTC AAGTCACATATTGTGTACTATAATAAATGTAAGTTTTCTCTGAACGTACAGGGTTGATTTCAACTCTAATGACACGATTCGTACAATTTTAAC 271942 29 69.0 0 ...G.T..C.....A..G......G.TTC | C [271967] ========== ====== ====== ====== ============================= ============================================================================================= ================== 9 29 91.6 40 GTACTCTCTGCACCCGCAGAGGTGATCCT # Left flank : GTACGGCGAAAGTAATTAAAAATGCTCATTGGAGATTTGAAAATACTGTTAAAATAGAATTAGTTTACGTACTCTCCGCACCTGCGGAGGTGATCCTAAATTCGGCTAAACCGGGATTTTGAGGTCATAGTACTCTCCGCACCTGCGGAGGAGAATTCTAATGATCTGGCGTCTCAATTTTTTACTTTGCATCTGAAGCGTCTAGAAAGTCGTTTTTTGTCATAGCAAATTAATGCTGTTTGATGCTGGTTTTAATTTCTCAGCCGTTCGTTTCAGGGCAGAAAAAGCTAGGTATACTTGGCCCCGATTAATTAAAGCGCAACGTAAAGATTTGACGAGATTTGACCAAAATTCATATTATTTGTTGGGTATTTTTTTGCCGATTACGGTTAAAATGAAAGTGTGTATTTATTATTGAATTATTTTACTCGCTGACGGAAACTAATGAAAAATTAGTGTCAGGGTAATCTAAAAGGGTATTAAACCGCCGATTTTTTACT # Right flank : CAAATCATTTTGATAGTCGGACATCGACTTTAAATGATAATCGGCCTACAGATGTCATAATTGAACGAATTGGAGGAATGTTTAGTGCCAAAAGGGGATATGCAAACACTGCTTCGACGGATAACTGCTCTCAAAACAGAAATGGACCGATTTCGGCCATTGTCGCAACAGCAGGTGCGTCAATTAGAAAAAGAGACCCGAATTGAACACGTCTGGTCCTCAAACGCTATCGAAGGGAATCGTTTAGATCAGTTCGAGGCAGCTTCCATTTTGAATACTGGCGTTACCGTGCACGGTGCATCGGTCAAAGATATTCTAGAAACGTTAGACTTAAACGAAGCCTATGAGTACATGATGTCTTTAGCCTCTAAAAAAGAGCCTCTGACTCAAACGACCGTCCGAGATTTAAATCGTATTGTTACCTTGCAGACCACATCAGACAAATCTGAGGCGGGCGTCTATCGTGCGGTTAGCGTTTGGCCAAACGGTTTAGAAAATCA # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTCTCTGCACCCGCAGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 273418-274848 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZCX01000002.1 Schleiferilactobacillus kimchicus JCM 15530 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 273418 28 100.0 33 ............................ TTGAGATCCCTGTGGAAGCCCGGAACTCACTAC 273479 28 100.0 33 ............................ TCTCATACTTGCGATACGTGTGCATCACTCGAC 273540 28 100.0 33 ............................ CGGATCGTCCAGCCCTCGGAATAGAATCTTTTG 273601 28 100.0 33 ............................ CCGGTTTATTCAAGGCGGAATCATTACAAATGA 273662 28 100.0 34 ............................ TAGTACACTGTCTCCATGCCGTCATGATCACTTA 273724 28 100.0 33 ............................ TCTCGATGAGCTTACGCTGATTTTCCTCGAGAA 273785 28 100.0 33 ............................ CGCCACGACGGCTCCTGTGGTCGCCACACGAGG 273846 28 100.0 33 ............................ TAACAAAGTTTCTAAAAAAGATACGAAAAGTTG 273907 28 100.0 33 ............................ TAAGCTGGTCTTACATCTTCACTCATTTGATTA 273968 28 100.0 33 ............................ CTTTTTCTTCAAGTGATGGAGAATTAATCATTT 274029 28 100.0 33 ............................ TATCCTTGGCGCATGAGTTCCGGGTGCTCACCA 274090 28 100.0 33 ............................ TAGCACCGGTGCTTGGTTCAAGATTGGTGACTG 274151 28 100.0 33 ............................ CTACCTTACAGTGCCGAAAGACTGGTTAGGGAA 274212 28 100.0 33 ............................ TAAGCCGTCCGCGTCTACGGTGGCACCTTCCCC 274273 28 100.0 33 ............................ ATGAGAAAGGTATTTCAAATCTTCGGAAGCTAC 274334 28 100.0 33 ............................ TTATTGTGGCTACTGAAACCGACAAGCGGTAAT 274395 28 100.0 33 ............................ TCGATTAGCTCACCCTGAAATAATTTCGAGAAA 274456 28 100.0 33 ............................ CGTGGCATTTAACTATAATATTTCCTACGAGAT 274517 28 96.4 33 .......................A.... CGACCAGCTATCAGTCGAAGATTACCGTCAAAC 274578 28 100.0 33 ............................ TTTGAAAGCGACCGTGGTGGAGATATCCTAAAG 274639 28 100.0 33 ............................ CGTGAAGCCCGCAAGGCTGGTGGGCGTACCAAC 274700 28 96.4 33 ............T............... CAGGATAAGGGAGTCCGATACCACAAGTGGTGC 274761 28 89.3 32 .............C...A.....A.... CGGCCTGGAGGTCTTGCTGGTACCGGTTAAAA 274821 28 78.6 0 C.......T...T.C..A.......C.. | ========== ====== ====== ====== ============================ ================================== ================== 24 28 98.4 33 GTACTCTCCGCACATGCGGAGGTGATCC # Left flank : ATTTTCAGATCGATAACGGGCTCTGGTTGGTATAGCGATGCTTTTGCCCCGTCTTAAATACTAATACAAATTTATTGTACTGTAGAGGGATGAGAGATAAGTCATTTCTCAAAAAGGACAGAGTTCAAACACGAAGATTTAAAATAATGGCTCATGTTTACAGTTTAGGATTGTCTCATTACTGGCGATAGGGAGTATCATAGCTAACTTTAAGAAGAATATTGAATCCCAGATATAGAGTGTGCTATCGTATCTTGTTTGCAGTTATTCTCAAGCTAGAGTTGATTAAACAGAAACGAAGAGAGCGAGACCAGCCTGTTTTGAAAACCTGGGAAATCAGAGACTGACTCAAATGATAAGGCGATTTTGATAACCAGGTAGAACGTCAAAAGATTAAGCTGATTAAGTACGTAACTTAGGTGCTTGTTGCGTGCGACGAAAGTAATCGAAAAATGGTTCTTGGAAATTTAAGGATGCTGTTAAACTAGGATTAGTTTACT # Right flank : CTGGGCAGGGCTAATTGCTTACATCTAACTAACTACCCCAAAAGCCCAAAAATATCAAACCAAATCACCACCACTCAAAAAAGCGATGCCCCAAGGCATCGCTTTTAATATTCCCATCTAACGCCCCTCAATACGGCCGCGCATACTGATTGCCGCGCGCTGCTCGGGCTGCGCCACCTGCCTGAGCTTGTGTTTCGCTTTCGTATTGGTAATTGGCAGGGTTGGTGACTTTGGCGTAATACTTGTGACTGTCAGAAACGTAAACCATGCCTGGTGCTGCGACGTGCCACTTTCCGGATGTTGTTGCGGAAGCGGGCTTGCTGACGCGGCGAGTTTGACGAGCCGTTGTTGTGGCATGGCGTCGAACTGGGGCAGAGGTTGCGACTACTGAATGGTGAGTCGGTGTCGTGACCGGCTTAGCATCACTGCTACCGTTGTTATAGTCGACTTTAATGCCCTCTGCGGCGTTGATGACGACGATTTCAGTGTTAATCGTGCCA # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTCTCCGCACATGCGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //