Array 1 2755-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJIP01000001.1 Thermosipho africanus H17ap60334 Contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 2754 30 100.0 42 .............................. TTAGTGTGAATTCGATTGTGCCATCATATGTGTTTCTTTTTG 2682 30 100.0 37 .............................. TCCTGTCAATCTTGTCAACTTGAAATAGCGATATTTC 2615 30 100.0 45 .............................. TCCCATATTAAGTTTCTTTGTATTTCTCCATCATTTGCAAGGACA 2540 30 100.0 40 .............................. TTTTTTTACTGCTGTCATACTTCTCCCTCCTTTAAACAAT 2470 30 100.0 39 .............................. AAAAAAGTGACCAACCAAAAAGTTGGTCACTTAATAATA 2401 30 100.0 44 .............................. TTTCCATTTAATTTGTGATATGCTTCGACAAATATTTCTGTTTC 2327 30 100.0 40 .............................. TACTGCTGCGAAAGCTCGTGGGTGCTTCCAATATACAAAC 2257 30 100.0 43 .............................. TGGTACATATTTTTGTGGAATGTACTTAGCGGTTTTAGTAAAA 2184 30 100.0 37 .............................. GGAAAGCATCACAAGAACTCTTGAGAAAGGTAGTTTT 2117 30 100.0 45 .............................. ATTGTTCCATCGCGCAATTTGTATTTCTTGCATTCAAAAACACCC 2042 30 100.0 37 .............................. TTATTTTGTCTAAAGGAATTACATTTCCTTGAATTTC 1975 30 100.0 39 .............................. GGAACTTAAAAACGTAATCCTTTGTTTCTTGTGGAATTT 1906 30 100.0 45 .............................. AGTTGGTGCTGGAAGGTCGACAGGGTCCCCGTACGTTATTTTAAA 1831 30 100.0 40 .............................. CCATGTTACAAATGAATCCGACCTGAGTAAAAAGAAAAAT 1761 30 100.0 41 .............................. GTATATTATTACAAATTTTTACAGAACAACTTTTATTCATA 1690 30 100.0 40 .............................. ATCTTACCCTCTGGCAGCCTTTCGAGAAGTTGTAATACAA 1620 30 100.0 40 .............................. CAAAACATCTCTTTTTATTTGTTCAACGTCCATTTTTAAG 1550 30 100.0 44 .............................. TTCATTAGCCATTTGCTCCACCTTGATTAATTCTTTTTCTACAT 1476 30 100.0 39 .............................. TCAATATTAAATCTAGGTACAACTTCAACAAAATAATCC 1407 30 100.0 38 .............................. CTTTCTTTGCAAGCCTATTCTTAACATCCCTTATGTTT 1339 30 100.0 39 .............................. TTCAAAACACCAATGTATTCTATATCTTGCAAGTCTACT 1270 30 100.0 38 .............................. CTGATCTTTCAGGGATTGTATCTCGTTGACGAGATTTT 1202 30 100.0 40 .............................. CAATTTTCCTTTTGCCCGCGCATATTGAATACGATTAAGA 1132 30 100.0 37 .............................. AGCTAATTCCAAAAAAACTGGATTTTTGCCTTCTTCT 1065 30 100.0 36 .............................. GATTAGATGATGAAGATAGGAAAACATTTTTTGAAA 999 30 100.0 43 .............................. GCAAAGGCTCTCGGATGCCTCCAATACGCGAAAATCGCGTCTT 926 30 100.0 37 .............................. TTACTTTTGCTCATTCTACCCCAGAACCAACTACAAC 859 30 100.0 34 .............................. TTCTTGGACCTTGGTACACTTGCGCGTCTAATTC 795 30 100.0 49 .............................. CCCCACATTGATAAATTACAGCCTCATTTTTTGTTTTTAAATAACTCAG 716 30 100.0 45 .............................. GCTCCCAAGCCCCACCGTGGGGTGGGATATTTTTATCAATTTTCC 641 30 100.0 35 .............................. TCGTCTGCAAGTAAAACCCCGCTGTATCCTTTGGC 576 30 100.0 43 .............................. TTGTGGGTCTGGCAATCCTTGCACAGACCCGAATTTAGTTCGA 503 30 100.0 44 .............................. ATTTTATCCCAGACCCGATTTGGCCAGCCTGGGGACTTAATACA 429 30 100.0 39 .............................. CTCTTAATATAGACGGGCTTTAAAGGGGAGCCGTCTACA 360 30 100.0 47 .............................. TTCAGGTTCAAGCAGGAGCCCGCTTCGAACCCTGGTAATATTCACTT 283 30 100.0 45 .............................. GAAAACACCGAGGAATTCAATGATCCAGCAAGAGACATAAAACAC 208 30 100.0 39 .............................. ACCACTATTAGAAGGAATAGCACATGAGAAGAAAAAACA 139 30 100.0 39 .............................. TGTGTTTTGTAATTTATCATGTAACTTTAACATACCTTC 70 30 96.7 0 .........A.................... | ========== ====== ====== ====== ============================== ================================================= ================== 39 30 99.9 41 GTTTAGAATCTACCTATGAGGAATGAAAAC # Left flank : ATGCAAAAATAGAGGATAAAGATGAGAGGAATGAATGAAAGGAAGCTAAAGGCGCAGATTACATATATGTTACTAGGGCAGCAGTTAACGATATTAATAGACACACTCTCTGTTCATCCTAAGATGATTAGATTGATTGAAAAATAATTTTTACATTGACCAAGCTGTAACTCTAGATATCGAAAATGCCTCTGAAAACAATCTGTTAACTAAATAGAAACTTAATATTAACTAATAAAATTATAGTTGCTGGGTCTAAAACAGAAGAGTGTCTTAACATTATTGTAATCAATGTCAAAAAGTTCCTTTTTTACTAATTTATTATTACGGTATTTGTAACGTTTGTGTTAATAATTCAAAATTAGATGATTTTTTAGGAGATGTTTTTAAGTATGAATGATCGTGAAGGCTTATAAATTCTATATTTAACTTACAGTTTACTTCCGCTCAAAGGTTTTGTTACTTTTCTTTGTTATATTTATTTATGTGAATATTTATAG # Right flank : CGTGTTCTTCCATCCTTGCCCACAATATTGCTTGTTGTTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 661-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJIP01000018.1 Thermosipho africanus H17ap60334 Contig18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 660 30 100.0 36 .............................. ATTCTATGTATTTTTCCGCTTTTTGTCTTTCAAATT 594 30 100.0 37 .............................. CTTCGTGTAATCGATTCTTCCTTCCTTAGTCCAACAA 527 30 100.0 36 .............................. GTAGAACAGCTCAACTCAACAAGTTAGCTTTGTTGC 461 30 100.0 36 .............................. AAAAGTTCTGTTCTACCACCATAATAACTATTCCTA 395 30 100.0 35 .............................. CACAACACCCCCGTTTAAATATATCTTTCCTTATG 330 30 100.0 34 .............................. AATTAAATCTTTAAAAAATAAAATTGAGTAAAGG 266 30 100.0 37 .............................. GTTGGTTCCAAATTATGCTTATCCATTATTATTCTTA 199 30 100.0 38 .............................. TTGAATTCAATTGAATTTCATTCTAATTTAGTTCAATT 131 30 100.0 38 .............................. TCACCCTCCCCTACTCAGATACAGGATACTGTAGCTCA 63 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 100.0 36 GTTTGTACCTTACCTTGTAGGAATTGAAAT # Left flank : GTGCACAAGAGCAAAGTGCAAGTACCGAAGAAATGAGTTCAGCTATGGATACTATTAACTCTTCTATACTCTCAATCTCATCAAATCTTGAAAAAGCATCAAACGAACTAGTCAAACAAGAAGATTTAATAAAAGAAACGTTTGAAACCTCTAAAAAACTTTTCGAACTTTCTGAAAAGCTTTTAAATTCAATAAACAGATTTAAAGTAAAAGATTAAAATAAACACCATCAAAACTCTCCGCACAAGGCGGAGAGTTTTTTATAACACTTTACACTCATTCTTTTACAAATTAAATTTTTATATAAACGAAACAAAATTTTTATAGTTAAATTCAGTCGATGTTCAGTAGTGTAAAAAGTCCTGGAGATCGACTGAAAAAAATAAAAAATTATGTAAATTCAAAGTATTTTACGTTAATATTGTTTATTATTTATTATGATTTTTTCAAAAAGGTTGCAAAAAATAATGATATGTAATATAATTATAATGTAATCTATG # Right flank : TACAAAATTCCAATCAATTAAATCAGAAATAAGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTACCTTACCTTGTAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 55880-55379 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJIP01000017.1 Thermosipho africanus H17ap60334 Contig17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 55879 30 100.0 38 .............................. AGTAATTTTCTTCTCAGTTCTTCAACCACTTGTGGATC 55811 30 100.0 36 .............................. GCTTCTTCTTTAGCTTTTTGCTCCAAAAGAAGGGCC 55745 30 100.0 36 .............................. TTGGCTTGTGTAGCTAAGAGCTGTGTGTTAAATTCC 55679 30 96.7 39 ......G....................... ATGTTTTGTAGTTCTTTATTAAAGCGTTTTGCATCCGCT 55610 30 100.0 37 .............................. AGCTCACACGTGGGTCGAATATTTAAGCAAGAAAACT 55543 30 100.0 37 .............................. CCACGCAAAGAAAAAGTTTTTTCATGAACAAAATTAG 55476 30 96.7 38 .............................C ATTACAAATTCTTCAAACTCCATTCCAAACTTGAAAAA 55408 30 90.0 0 ....................T....T..T. | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 97.9 37 GTTTGTACCTTACCTTGTAGGAATTGAAAT # Left flank : TGATGTAATTCTAATAGATTCTAAAACTGAAGATTT # Right flank : ACAGAAGATACAAACATACGCTTTGCCTTGTAGTAATTTACATTTAATGATTGTTAAAAAAATCTCCCACATTTAATGAAAGTGGAGATTTTTTTAAGTTATTGTCTAAATTAATTTTCCATACTATAATGTTATAAAGCAAAATGTGAATTAAAATGGAAGAATCGAGGAGGTTTAAAAATGATTAACAACATAATTTTTGATCTTGGAAGGGTTCTTATTAACTGGGAACCTGAAAAATACATGAAAAAAGTTTTTGACGAAAATACAACTTCTTTTCTACTGGAAAAAATATTTAACACTAATGATTGGAACCTTATGGACAAAGGAGTTATTGATGAACAAACACTCTGGGAAAATAAATTAAATCAATATCCAGAATATAAAAAAGAAATTGAGCACATGAAAAACAAAGTTTTAGATTTACTCACACCAATTGAAGAAAATGCAAAGCTTCTTTATATACTAAAAGAAAAAGGCTATAATCTATACATCTTATC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTACCTTACCTTGTAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 95739-97839 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJIP01000005.1 Thermosipho africanus H17ap60334 Contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 95739 30 100.0 40 .............................. GAGTAAACACAATTGTGTTTCTGCCACGTTTTGCATATAA 95809 30 100.0 39 .............................. CAACTCCTTAACCCAAAAATACTTAAATTTATAACCATG 95878 30 100.0 43 .............................. TAAATAATAATATCTCATAAAAGCTGTTGCATCTAAAAAAGGA 95951 30 100.0 39 .............................. AACTCCATTCTCTTACAACTAATGATGTTCGCCATTTTG 96020 30 100.0 46 .............................. TAATGTTTCCAATGTGCCCCAAAATAATAATTTTGGAATAACTCGG 96096 30 100.0 39 .............................. TTGACTAAATCAAATCTTTTTACTAACATCATAATATCC 96165 30 100.0 43 .............................. ATTGTTTGCTTATCTCTTTTTCTTGCAATAGCTTCATATACTG 96238 30 100.0 43 .............................. ATCCACTTGTTCAAATTAAAATCTTTAACTGCATCTCTTAAAT 96311 30 100.0 44 .............................. TCCTCCTCAGGCGCCCTACTTTCGCCACCTACCTATTCACTTTT 96385 30 100.0 44 .............................. AACAGTGTCAGAAGCCGAAAAAAGCGCTATTTTGAATTCAATAT 96459 30 100.0 42 .............................. ACACCAATTCGCACAAGACATGTTATAGGACAAATTACAGGC 96531 30 100.0 38 .............................. TCATTTCCTATTTCTCCAAACTCGCTTAATAGTTGCCA 96599 30 100.0 42 .............................. TTATTTAAATCAAAATGTGATATAATTATGTAAAAAAGGTCC 96671 30 100.0 42 .............................. TTTGCAGCCTCGTAAAATTCGTTTCTCCAGCCATCAGTCCAG 96743 30 100.0 44 .............................. CATACGTTTGGTATATAGAAGCCACCTGCTTGGTATAATAAATA 96817 30 100.0 43 .............................. GGTTTCGTAACCTAATCCTAATGGGTTACCAGTTCCTAAATAA 96890 30 100.0 44 .............................. TATAATTTTCATCTGCTTGTTTCAATGCAAGATTAAAAAGTCGC 96964 30 100.0 39 .............................. CCAAGGTTCTTTTGGTCATCTCCCTTCCCTACTCAGACA 97033 30 100.0 42 .............................. TTACTATAAAGGGCTCCAGGGCCCTTTATTTTGTATATAACC 97105 30 100.0 39 .............................. ACATCCTATCGGCAAGGAACTGTATAATCGTTTAAAAGA 97174 30 100.0 37 .............................. GAATGTATGCGTCTGTCCAGATTGATGGTTTGTATTC 97241 30 100.0 44 .............................. AATAGTTGCATGGAACAACAAATATTTCGTCTTTTGTAACTATA 97315 30 100.0 45 .............................. GTATGCGGGTTCCTCAGTGATATTTAACACAATTGTAAGAATGGA 97390 30 100.0 38 .............................. CTTTTTAACTTTTATGTAAGGTAATGCATTTAATAAAG 97458 30 100.0 43 .............................. ACAAAAAAGGTGCTCCAGACGCAGGTACAAATAAAAAACCCGC 97531 30 100.0 39 .............................. ATAATGTGCGGAAGGCGTCGGTTGGTGGGCCAGTTCGGA 97600 30 100.0 42 .............................. TTGAATCTCCTACCAAAAACGATTTTGCAGGCGTCTGCAAAA 97672 30 96.7 39 .............T................ ATAATGTGCGGAAGGCGCCGGTTGGTGGGCCAGTTCGGA 97741 30 96.7 39 ...................T.......... ATTTCTTTGAACAGTACTTTTTCAAAATATGTCGTTTTT 97810 30 76.7 0 .........T.......T..C....TGTT. | ========== ====== ====== ====== ============================== ============================================== ================== 30 30 99.0 41 GTTTAGAATCTACCTATGAGGAATGAAAAC # Left flank : ATTTATCAAAGACAAGAATAGATATTTTGTTGAGTAATTTTTGTGGTAAAATAATATTGAAGTGGATATTGTTGGGCTACCCCTCCATGTGTTAGATAACATTTGGTATAAAATAATTTTAGCAGGTGTAGCCCTTTTTTATATTCTAATTTAACCTATTTTTTACTTTGGCCAGGGTCTACTAAATAACATTAGAAAAATAATATTAACTAAATAAAAAATTATTATTAACAATCAAAAATCAAAAAAATATTTTAAGATAAAATGCCACATTAACACTTTTGTAACTAATTTCGTAAAAACTTCTTTTTTTCTAGCTTCTTATTTTGATATTTGTAATATTTATGTTAACAGACTGAAATTGGACAAATTTTTAGGGGATGTTTTCGAAGATAAAATTAAATAAAAGCTCATAAATTCTAGATTTAACTTACCGTTTACTTCCACTCAAAGGTTTTGTTACTTTTTCTTGTTATATTTATTTATGAGAATAGTTATAG # Right flank : CATAATAATTAATAATTTACTTCTCCAACTTTGAAGTTTAAAATCATATGCATAATTAAAATCTACTGCCACAATTAACTATCTTGTAGGATTTTCATTTATTTAAGATTTATTTCTAGTGTATTGAAAAAAATTCTCCTGTTTTATACAATTTTTTTCTTATTTCATTTTTAGAATTCTTAATTTTATTAATCAATAAGTAAAATCTTAATAAAAAGTAATCCATAAGTCTTTTTAATAATGTATTTACAAATTTAAGTTATTTATATGGTTTAACTTTCTGTTTATAATAAATTTGATATTAAGAAAAACATTATTATTCTCAAATTCATTCGATTTACGATATAATTTTTTAATTACTTATTTTTATTGTAATTTAACAAAAAGTTACTAAACAAAAAATGTTATTGTAACATTATTTGTTTTGTGCTATAATTCTATAAAGGGGTGATTAAATTAAAATATAAGGAATTATTGAAGACATATGAGGAGTATTTTTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 73430-76897 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJIP01000043.1 Thermosipho africanus H17ap60334 Contig43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 73430 30 100.0 37 .............................. ATATCAAATTCGCCAAGCCGCTGTTCCCAAATATTCC 73497 30 100.0 42 .............................. TACAATTGACGGGACAAATATGGGTCGAAGCAAAAAGCCAAA 73569 30 100.0 40 .............................. ATGGCATCACCCTTTCTTTGCCACAATCTGTTACAGTGGC 73639 30 100.0 37 .............................. GGTTGGTAAAGTAGCTGATGTAGTTGTACCGAATTTA 73706 30 100.0 45 .............................. ACTTATTTATGAATGGTATAATAGTGATTTTGACATTGAAATTCT 73781 30 100.0 38 .............................. GAAATTGCATTCAGTTATAGCCTTGTTGATTCTACAGA 73849 30 100.0 41 .............................. AGAGAATTTTTGAAAATTGATGGTGCAACTGTGTCTGTGGA 73920 30 100.0 41 .............................. TATCTATTGGTGTTACTGCATTTGAACTGGGCGATAAGCTC 73991 30 100.0 44 .............................. TTCTCTTACCAAGTTTAGCTTCTTTCATAACTTCTTTTATATCT 74065 30 100.0 37 .............................. TTTATTTGAAATACGATTTTAAAACGGGAGATGCAGA 74132 30 100.0 42 .............................. GTTTTTATTTACGATGATGCACATTCAGAAGAATGGAAACAA 74204 30 100.0 40 .............................. ACCTGAAAAGACACAGGAGGGAAAAATTCCTCATGAGCCA 74274 30 100.0 43 .............................. AAGTTCGAAGCGGGCACCCGATAGAACCTGAAAAGACACAGGA 74347 30 100.0 36 .............................. AAATTCAAAGAAAGCGATTACTTCGAGGAAGTAAGT 74413 30 100.0 40 .............................. TGAGAATTGGTGTTCGAAGATATTTTAGCTATGAATATAC 74483 30 100.0 39 .............................. TCAAAAATTTTGAAAAACTGATGAATGAAGTAATTCAAC 74552 30 100.0 36 .............................. TATTCTAATTATCCAGGAGCTCGAGTTACAATTCAC 74618 30 100.0 40 .............................. TTCGACTTCGACTCCAAAAACCTTATTCGGATCTTTATTT 74688 30 100.0 42 .............................. GCGATCTTGTAATGGTAATTGGTGAGCCACAATCAAGACTTT 74760 30 100.0 44 .............................. CAACGGATTAAGAAGTTTTAAAGTAAAGTTGGTAGAAAGCGATG 74834 30 100.0 40 .............................. AGGTTTTGGAAGAAAGTGGATTGCAAGCCAAATATGTACC 74904 30 100.0 39 .............................. AAAGAGTTTAAGTATAGAATGCGGGAATACTACGCTAAC 74973 30 100.0 41 .............................. GTACCTTCAATTAAAATCGGTGGTAAACGTTTTATTGAAGA 75044 30 100.0 36 .............................. TGATTTTGGAACATGGAAGTTAGTGGATAGAAATGG 75110 30 100.0 34 .............................. GCAGCATCTTCTGGAAGTACAAGCAACCTAAAAA 75174 30 100.0 40 .............................. TTGATGATGTGAACGAAAAAATATATCGCAAGATAAAAGA 75244 30 100.0 36 .............................. TGATTTTGGAACATGGAAGTTAGTGGATAGAAATGG 75310 30 100.0 34 .............................. GCAGCATCTTCTGGAAGTACAAGCAACCTAAAAA 75374 30 100.0 36 .............................. TATGTTTTACGTTGAAGGGATTATTACATATCTTGA 75440 30 100.0 39 .............................. TTTTTAGGAAAAACCTTACGCGAAATTGGTAAAGAACTC 75509 30 100.0 39 .............................. AATCATTTCAATTGTTCCAGTAATTTCTAGTTTATTTGC 75578 30 100.0 38 .............................. AACGTTTATAAACAAATTTTTTGGAGGCGATAAGAAAA 75646 30 100.0 39 .............................. ATGAGGAAAGCCCAGGTTGTACTGTCAATTTCTGAAGAT 75715 30 100.0 42 .............................. AAGTGTTGTATTTGAATGAAAAAGAATTAAAAAACATGATAA 75787 30 100.0 39 .............................. GGAAATAATTCCAATGTATATAACAAGATATGTGTTTGA 75856 30 100.0 49 .............................. AAAAAATGTAGAAAAGGAAAGATTTTTGTTTTGGATCCGACCAAAGCCC 75935 30 100.0 46 .............................. TAGATTTTATAAATCTCGAAGATAGGTGACCTTTCGGTCACCTTTT 76011 30 100.0 45 .............................. GAATGCATAAGAAATCTGGTTCTAGCAATAATCGCTGATTGCGAT 76086 30 100.0 42 .............................. ACTGCTGAATTTGAAGGCAGACTTCCATACGATGGCATGAAA 76158 30 100.0 47 .............................. CAGGGACCCCGATGTTTGGGGGGCTCCCTGGGAGTGTATCCAAAACC 76235 30 100.0 42 .............................. ACTGCTCAATGTTTCGAATGTTTTAATGTTTGAAGCTTTTGA 76307 30 100.0 44 .............................. ATTCTTTTCTTCGCGGGGGCAAGGTTCTTGCCCCCAGATATTTT 76381 30 100.0 34 .............................. TTTTGCGTTTGGTGGGATTTCTTTTGCTAAAATC 76445 30 100.0 38 .............................. AAATATTTAATAATTACAAAATAAAATACGAAACTTTA 76513 30 100.0 37 .............................. ATTTTTACTTAGTTGATGAAGGGAGATAAAAAATTAT 76580 30 100.0 41 .............................. AATGTCTCTGAATGGCTGAAGGAAGAAATTCAACAAAAGCT 76651 30 100.0 39 .............................. GGAAATAAGTTTGTCTGGAAAGAGTTGGGAAGAGACGAA 76720 30 100.0 42 .............................. TTATGGTGAAAAAGAATTTGGTAAAACTTGCAAGAGTTTTAA 76792 30 100.0 46 .............................. AGTGATGAAAAAATGGTTAATGTAAAAAAGGTCAATTTCGAGTACG 76868 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================================= ================== 50 30 100.0 40 GTTTTCATTCCTCATAGGTAGATTCTAAAC # Left flank : TTATACGTCCTTACATAAATATCTATCAAATAATCATCTTCGCTTTTAATAATACTTCTTAGTTTCACTAATCTTTCGGCAGGAACTTCAGGCTCAACTACGTAATTGTATATTGGAGCAATAATACCAAATACAAAACCACCTAAAAATGGCCAAAATTTATTAACATCTTCATTTGCATGAACTCTAGCTAAAGATTCCACTTGTGATGGTGTTGTTAAAAAGTTTTGCTCACCAAAAGAGATTATAATAAAAATACTTATTAAAAGAACTATAAAAAATTTTCTCACAAAAATCCCTCCTTTAAAATTTGCTTTACACTTATAATACGATTTAAACCTTTAAAATCTGACATAAAAAATTGGAGCAATTAATTGCTCCAATTTAAAAAATATAATTTATCCATATCAATTTGTTAAATCATGATTTATTAATAATCTTCTTATATTTTTTCAAATAAGTTCTAAATATAAAATTATATTTTTTAAATAAATAATACA # Right flank : CCCTATAACTATTCTCATAAATAAATATAACAAGAAAAAGTAACAAAACCTTTGAGCGGAAGTAAACGGTAAGTTAAATCTAGAATTTATGAGCTTTTATTTAATTTTATCTTCGAAAACATCCCCTTGAAATTTGTCTAATTTTAGTCCGTTAACATAAATGTTACATCTATTATATTATAGAAAAAGTAAAAATAAGCTTTTTTTGAATCTGGTTAAAAGTATGTTAAAAAGATTTTCTTTCATAGAATTACTTCAACACTTTTTTATAGTTAAATTTAAATTTCTTTTTAGTTAATTTTTTTATCTTATTTTCAAACAACTACAAAAGTGAATACACCCGAGTCAATATAAAAAATTATCTATCGATTAATCCTATCATTTTATGATAAGTTGTAAGTGCTTCTATTCTGCTAACTGCTATCCTAGTAATATATATGTCATCTGTTATTTTATTACCTTCTTATTAATCTTCTGTTTTAACTTTTCTATATACCGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCATTCCTCATAGGTAGATTCTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [91.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 311-4214 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJIP01000044.1 Thermosipho africanus H17ap60334 Contig44, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 311 30 100.0 40 .............................. CAAAAATTACAGCAAATTCTTTCAATTGCCATTTCAAAAC 381 30 100.0 41 .............................. TTATTTAATCTTCAGGAACATCACTTATAATATTTAAAAAT 452 30 100.0 44 .............................. TACATTTTTTATGGGTGCCCGCTTAAGAGCACCCAATAATTAGC 526 30 100.0 41 .............................. CAACAAATACTCAATTTTATTTTTTACAGATTTAATTTTAA 597 30 100.0 39 .............................. CCAAAGTTCCGTACCTCTTATCATAAATTTTTTCAACCT 666 30 100.0 43 .............................. GTTAATTTAACCCCCACGTCCTTAGCTCTTTTTCTCAGGAACT 739 30 100.0 44 .............................. TTCCTTTCATGTTTTACACCTCCTAATTTAATCTTTTTTAAATT 813 30 100.0 42 .............................. TCAGGTTCAAGCGGGAGCCCGCTTCGAACCTTGGTTATTCAC 885 30 100.0 43 .............................. GGAGTTTTTCCCTCCCATGCCCTTTCAGGTTCAAGCGGGAGCC 958 30 100.0 38 .............................. AAACTGTTCTCTGTGAATATCTCTGTCAAGGCCTTCGA 1026 30 100.0 40 .............................. AATTGAAATACTCTTTCCTTGGCCCTGTGTAGATTTGTTC 1096 30 100.0 42 .............................. ACGTAGACCTCGTTAATTAAATGGTCCACCTTCAGCTTCATA 1168 30 100.0 36 .............................. AAGTAAGTGTGTATCGAGGTCACGTAGACCTCGTTA 1234 30 100.0 37 .............................. AATTTAAAAATTAATTTAATACAAGCGATTAAAAAAA 1301 30 100.0 40 .............................. AAAGTTTTCATATATTATAACTTTTTGAAGTTTTTTGTTT 1371 30 100.0 40 .............................. TTAAATACACCATAGAGACGTTTTAAACGCTCTGGATATA 1441 30 100.0 46 .............................. TCACCCAATCTTACACTCATTACATATCCATTTGTGAATGTTCTTA 1517 30 100.0 41 .............................. CAGAGAAGGACACCCACCTCCTTTTTTATTTTTTATTTTTC 1588 30 100.0 39 .............................. TCATCGCAATCTTCGATTATTGCCAGAACTAGGTTTTTT 1657 30 100.0 41 .............................. ATACATGTGCAGGCATTTCTTCCCGCTTTTTAGAACCAACA 1728 30 100.0 40 .............................. GTTGGAGTTGAACGTGTTCTTTGAGCTCTTCAAAAATGTC 1798 30 100.0 44 .............................. TTTGGAGCTAGAACATCTTTTCTATCCGTGGCAGCAAAAACTAT 1872 30 100.0 38 .............................. TCCCCTACTGAGGTGCAGGATGCTGGGACGCATGTAGA 1940 30 100.0 37 .............................. ACTTTTCCCACTACCAGTCATTCCAGCTACAAAAATA 2007 30 100.0 42 .............................. TTGTATAAGTCTTCAATGAATTTCTTAAATGGATTTATATTC 2079 30 100.0 37 .............................. AAAATTGGCAACAAAATAGGGGCCTGTGATTGGTTTA 2146 30 100.0 41 .............................. CTACATTTTGCTTTTATAGCAATCTCGGTAAAATGGTTAGG 2217 30 100.0 38 .............................. ACGCTTTCTTTAGTTGTTATGTCGATAGGTAATATATA 2285 30 100.0 39 .............................. AACTATAAACGTAAACAACACTGTCAATATCGAAATATC 2354 30 100.0 35 .............................. TATAGTTGGTTGTGGTGTAGGGCTAGGGTCTGTTC 2419 30 100.0 38 .............................. TGGTTTTCCATTTTCGACATTTTTAACACCTCCTATTT 2487 30 100.0 38 .............................. CACGGTTAGAATTTCGTCCCATGCAATATTTTTCATTA 2555 30 100.0 44 .............................. TTGAATCTTAACATTTTCACTCCCCTCCTTTTTTTTGAAAATTC 2629 30 100.0 44 .............................. ATCTTCTTGTCTATAACTAATTACCGCATAACCTGTTTCTATAT 2703 30 100.0 43 .............................. GAACATTCTATCCTCATACTCAAATGTTCCGAAGAAACCTTTC 2776 30 100.0 40 .............................. TAGTAAAGTTCGAAGTTCCAGGAAACATGACAATTTATGG 2846 30 100.0 37 .............................. TTGCAAGCATACCACTTATTGGTCAATTATTAGGATT 2913 30 100.0 43 .............................. CCCCCTCGGTTAAATTTAGCGTTAATATATCTAACATTAATTT 2986 30 100.0 36 .............................. TACAATTTCAGGTTCTATCACGTTTGACTTTTTAGT 3052 30 100.0 45 .............................. CTGATACTGTATCGAAAACAAGCATATACTTGTTAATACTCTGTA 3127 30 100.0 34 .............................. TATTTTAAACAACGGTATGTCGCCTACTGCTCCA 3191 30 100.0 44 .............................. TTTGAATATTCACTTTTCAAAGAACAATATCATTAATACAATCT 3265 30 100.0 42 .............................. TCTTTTTCTGGCCATATTTTTCCCTCCTATATGATATTCCCC 3337 30 100.0 45 .............................. CGCTATTTCTTCATATGAAAGTGTTTTCCATTTTAAAGCGAGATT 3412 30 100.0 43 .............................. TCCTGGCACACCAATTATGTTTCCTTTGTCGTCTCGAATTGCA 3485 30 100.0 45 .............................. TTCTTTTTTCAAATTCTTTTGCAACTATGTCTTCAAGAATGTTTC 3560 30 100.0 35 .............................. CTTTCTTAAATTGCGTGGTGTTCGCGATAAAATCA 3625 30 100.0 42 .............................. CCGTTTTCATCTATTGGTTCAAGTTTTACTGTATCATAATCA 3697 30 100.0 45 .............................. AAACGTCCAATAGTCGCTTATTTTGCTATCATATGGTTCCAACAA 3772 30 100.0 42 .............................. CTGTTGCAATGTCTAATTCTTTTGCAATTACTTTGACAATGT 3844 30 100.0 43 .............................. TCTTTGTTTTTGGTAACAACAAAATAAACACAAACATCTCGCC 3917 30 100.0 37 .............................. ATTGCTTCAATTATGTTACCGTATTTTTTTCTAATTT 3984 30 100.0 35 .............................. ATCTGAATATGTTACTTCCACTATTGCTTTAATAT 4049 30 100.0 36 .............................. ATTAGAAAGCCAAAGCAAAAACACAATTTTAGATCT 4115 30 100.0 40 .............................. GGTTAATTAGTGCTGTGTCTTGGACGTTTAGTTGTTTGTC 4185 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 56 30 100.0 40 GTTTAGAATCTACCTATGAGGAATGAAAAC # Left flank : TCCGAAAAACAAAAAAATTAACTAAAAGGAAATTTAAAATTAACTATAAAAAATTTTTGATGTTATTCTAAGAAAGAAAATTTTTTAACACATTTTTAACCAAATTCAAAAAAGTCCATTTTTACTAAATCTATAATATAGCATATGTAACATTTATGTTAATAGACTGAAATTAGACAAATTTTTAGGAGATGTTTCCGAAAATAAAGTTAAATAAGAGCTCATAAATTCTAGATTTAACTCACCGTTTACTTCCACTCAAAGGTTTTGTTACTTTTTTTGTTATATTTATTTATGAGGATAGTTATAGG # Right flank : CTGCATAGTCCAAATTTTTCAAACTATTCTCACTTTTTTTGAAATCTAGTTATTGAAATTCCTGTATTGATTCTCACTGAAAAGTTTCATTAAAAATTTCTATTAAAAATAAATGCTCCATTCTTGCACTATGACAAGAATGGAGCATTCTTTTTGTTTTTTAATAATTTATATTTACATAGCTATAAACTTTCAACGCTTTCAACTGGATAATCAATTTCAGATAATTTTGCTTTTACATTTTCTAGGTTTTCGGTTTCAATTTCAACAGTTTTACTTTCTAATTTAACTTCAAAGTTTTTTTCACCTAGCTCTTCTAATGCTTTTGTTATTCTCATAACACAATGTTTACAAGACATATCTGGTACTTTCAAAATAAATTTACCCATAAAAATCCCTCCTTTTTAAAATCTTCCTTTCATTATTAATTCTTTCTTTCTTTTGTACTCTTCTTCTGTTATTTCACCTTTTGCAAGTTTTTCATTTAATATTTTTAAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //