Array 1 237429-232156 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMIW01000001.1 Paenibacillus aceti strain CGMCC 1.15420 sequence001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 237428 32 100.0 34 ................................ ATTAGTAACAGGACTTGCCAATGCAGCTAAGGCT 237362 32 100.0 35 ................................ TTAACAACAACGCTCCAACCCTTCTGGCTGATGAT 237295 32 100.0 37 ................................ AATCCAGTTAAGGTAACTGGTTCAGAAACCAGTGTCC 237226 32 100.0 34 ................................ CGATATATCGCTTTCCCGGACGATCCGAAAAGGT 237160 32 100.0 36 ................................ CAAACCGTCTCAGGATCGTCGAGATCGGGCAGAGCT 237092 32 100.0 34 ................................ CGTGGAACATTAGATTTTTTAGCCCATTTTGTTA 237026 32 100.0 35 ................................ AGATGGATACGCTGGCCTATGTTTTGATGTTTTGC 236959 32 100.0 33 ................................ CCTCCATCTCTATTGAATGCCCTCTCTTGAGCA 236894 32 100.0 36 ................................ GTATACGAAAAAAACAAATTGAGGTGATACAGGACA 236826 32 100.0 31 ................................ GCAATAATCGCCGCGAGACATATCGATTCCG 236763 32 100.0 37 ................................ CAGAAGGCGCACCATCCGAACTAAGGCGTGGTTTCTT 236694 32 100.0 37 ................................ TCTGTAACGGTCCCGATCCGTCTTAGAAACATTACTC 236625 32 100.0 35 ................................ CCATATCCAACCCTATTAAATGTTTTCCGAACCGC 236558 32 100.0 36 ................................ CTGGAGCAGCTGCGCGATCCGTGCGCGGTTTGGGTG 236490 32 100.0 35 ................................ CTTGATAGCATCCTCACCTGTATTAATTACTAAAT 236423 32 100.0 36 ................................ CTATGCCTAGGGGTCAAAAGCAGACCCAGGAATTTT 236355 32 100.0 36 ................................ GCTATAAAAGCTGTGACTAGTAAACAGAATGATAGG 236287 32 100.0 35 ................................ CGTTGCTCAAGCAAAAGATACAAACTAACAATGTA 236220 32 100.0 35 ................................ ACTTTGAGGAGTTCGGCACATATAAACAGCCAGCT 236153 32 100.0 35 ................................ GATTTGATCACAGACATTGTTTATCCGATTTGCGA 236086 32 100.0 35 ................................ GACGATCTGATTCTTGACACTCTGTCCATAGGCCC 236019 32 100.0 36 ................................ TTTTGTCATATCAGGCTTTGTTTGTACGCCTTGCTT 235951 32 100.0 35 ................................ TCAAACGCAAAAGCGGATTCGATTTTAAACGAGGC 235884 32 100.0 36 ................................ ATCTACGCTATTGGTGAGGACCTGAACGGCAGATTG 235816 32 100.0 34 ................................ ATGCTGGCAATTTTGCTTAAATCGTTCGTATCGC 235750 32 100.0 34 ................................ TTCCGGTTGCTGGGTCTGTCCAGGTAAGATTGTT 235684 32 100.0 37 ................................ ATGTACAATGCAACGCCCGCAGCGATCAAAGCAGCAA 235615 32 100.0 33 ................................ ATATTGTTTTTTCAAAGCAGTAACAAGTGCATC 235550 32 100.0 35 ................................ AATGTTATCGGACATTTCCTATCCTCACCCCCTGT 235483 32 100.0 33 ................................ AAATCCGCAACCGAACCATTCGAAACCTCAACA 235418 32 100.0 35 ................................ ATCCGGTTCCATGCCGCCGCCACGAAGCATAACCT 235351 32 100.0 35 ................................ AATCTACAACGGCATCCGGCGGAGCATCGACTCCG 235284 32 100.0 35 ................................ TATAAAGAAAGACGAGTCAAAGGAATAAAACCCAC 235217 32 100.0 34 ................................ CCTTACTCATTTGAGTAAACTGCGCTTCCGTTGC 235151 32 100.0 36 ................................ CATTTACGCTCGAGGTCAAGGAAATACTGTCGGGCC 235083 32 100.0 33 ................................ AGCTACAGGCTTTATGTGATCGACATGTAACAC 235018 32 100.0 38 ................................ TAAGCACCTCGCCAGTGTCTTCGGTGCTTATAGCCACC 234948 32 100.0 38 ................................ TAAGCACCTCGCCAGTGTCTTCGGTGCTTATAGCCACC 234878 32 100.0 33 ................................ TAATAGGATTTTGGGTTCTCTTGTCGAATTAGT 234813 32 100.0 33 ................................ TAATAGGATTTTGGGTTCTCTTGTCGAATTAGT 234748 32 100.0 37 ................................ TTTTTTTAGCCATACACACCGTTTTCCTCCCCTGTTA 234679 32 100.0 34 ................................ GCAGTAGCAACAGCGGATTGGGGGACGATCAGCC 234613 32 100.0 35 ................................ GAATCCCCAATGTTTGAAAATGGGTATTACCATGT 234546 32 100.0 35 ................................ AGAAGAATATCTAAAAAATACCCCGCTTAAAAATA 234479 32 100.0 33 ................................ GACGAGGTATACATCCCAAATTAACACCTCCGC 234414 32 100.0 36 ................................ TAGCGAGCATATTTAGGCAAGCGATAGAATGGAATG 234346 32 100.0 36 ................................ GACCTTAATACAGGCAATAACGAACTAATCTATACC 234278 32 100.0 36 ................................ TTTCCGGATACAGTTGCACTTTCTAGAAAATCGATT 234210 32 100.0 36 ................................ AGTGTACAGTCATCATAATTTACGTCACTCCAACAC 234142 32 100.0 35 ................................ CTTTAGAGTGCGCCTTTGTAGCAAGAAATTCGATT 234075 32 100.0 36 ................................ ATCAGAAAACTAAGATTTATAGTCTAGCGACATCCT 234007 32 100.0 36 ................................ GAACCCATCTGAAAGTGATTGGTATTCTGCAATGTG 233939 32 100.0 34 ................................ AACGAGATCAGATAAAAAGTCATATCCAGTATTA 233873 32 100.0 36 ................................ CTTCAGGCGTATTAAAACAAGTGGTGAAAAATGAAA 233805 32 100.0 36 ................................ CGTCAGATCATATAAACGCATGGTCTTTACAACCTC 233737 32 100.0 35 ................................ CAATAAATGATGAAGATAAGGAAAAAATTAAACGC 233670 32 100.0 37 ................................ TGACGAAGCCGAGGTGCACCGAAACCAAAACCATCGA 233601 32 100.0 34 ................................ TGATAGCTTTCTGTCCGTACATCCCTGTAAGCTT 233535 32 100.0 37 ................................ AAGTACTGTCTTACGTTGTGACAAACGTAGTGATTCA 233466 32 100.0 36 ................................ ACGCAGAAATCGGCAAAGCGATTGCGTTAAGAGAAG 233398 32 100.0 36 ................................ ACGCAGAAATCGGCAAAGCGATTGCGTTAAGAGAAG 233330 32 100.0 33 ................................ TTTAGCCGTAATACAAGCATCCATGACGAAATT 233265 32 100.0 36 ................................ ATCGCACATCACGAATTTGTTAATGTTCTTTAAACC 233197 32 100.0 35 ................................ TCTGTGCAGCGGCGCCGAATGCCGACTAAGCCAGG 233130 32 100.0 36 ................................ CCATCCACCTGCGTCCGCAATATCGAACGTATCGAA 233062 32 100.0 36 ................................ TTGAAGTTGAAAATAAGACATCCTCTTAAGATCGTC 232994 32 100.0 37 ................................ ATTTGGAGCAAATGCAACTTCACGCGGTACAACTCTC 232925 32 100.0 35 ................................ ATAAAATACATGCCCTCGAATAGCTCGTTTCCCTC 232858 32 100.0 37 ................................ CGCGGCAGAGACGTCGTCCTTTGTTCGCGTCGCGCCG 232789 32 100.0 35 ................................ CGTTGCGCGCCGAACAGTCTCTTTCCACGTTTCCC 232722 32 100.0 36 ................................ CTGACCTAAAGGAAGTGGGAATATGTTTGGAGGACC 232654 32 100.0 34 ................................ CCTAAAGTTTGTTGATGATAATGGTAAATTAGCA 232588 32 100.0 36 ................................ GTTGAAACGCCGCTATACTTCGCAAGTCCTTCCGCA 232520 32 100.0 35 ................................ CAGACGTTCCTCCTCAACTGCAGCTTGCCGCTCAA 232453 32 100.0 34 ................................ TCCAGGGTCAAGATAAACAATAGCCCCTCGCCCC 232387 32 96.9 34 .......T........................ CTCGCTCGACTTGTTTAAGGACGCCTTCACCAGT 232321 32 96.9 36 .......T........................ ATTTGCATCTCCACGGACTCCATGGCGTCGGCTATC 232253 32 93.8 35 .....G.T........................ TATTGTCGATTGCTGTCGATAATTGCGTATTAAGA 232186 31 87.5 0 ...........C.C..........-.....G. | ========== ====== ====== ====== ================================ ====================================== ================== 79 32 99.7 35 GTCGCATCCTATGTGGATGCGTGGATTGAAAG # Left flank : TTTTTCTGAAGGACGGGTATATTGTTGTTAATTTTAATATTGAGACAATCCGTGAAGGGCAGATGGGCAAGCCACACTTGCAGTATATCCATGCCCCGCTGATGAACCAATGGCAGCAGATGGAGGGTTTCCAACGCAAGGTTACAGACCCGTATGGTCGTGATTTTACATTGCTGGACGGAGATGTGGTATTCTACCATGCGGATCAATCGAGCCGGGATGATTTTCAATCGATGGTGACACATTGACATATGATTATAGTAGAATAAAGGAAAATTGACCTGGAGAGTTGAATATAATATTATTAGTCGAAATTTAATAGTCTACAACAATATAATTTGGTGCGAACCTCAAGTGAACATAAAATCCCTGGGGGATTCGCACCTGAAATATCTTGCGATTTATCCATAATTGGAATTTAATTCAATATTTTCAGGTGATACTTTTTTGATTTTAGTAAGAAAGTACCGATTTTGAGGTCTTCACACCTTAAATTCGGA # Right flank : GATAAATGTGCAAATGTCGGAAGTTTCTATCCTAGTCTAGTTGTAGTTGGTACATTTATTTTGCAGGATTACTGGGATTCTCGTCTTGCAAGTGTATTTTGTACACTTAAAATAGCCGATTCTTGATTTAGTTAGGAAAATTGCTATTCTAAGTGTACTTTTTGCAATTAAGGTGAGGCTGGAGCGGATATGTGATATTTTAGCTGTGCTTTATGCAGTTAGAGGTCACGTTAGCGGGGAAGAGCCTCGCTTGGTCAGGCCGCCCAATCGGCAAGTTACTTTATTGACATCACGCAACATTATTGCGATAGCGCTCCAGTATCATCCAATTGGTACCGTGGTGCAGATCATAAGTGCAAATATACAACTATATTGGTGCATTATGCTCTCCCTAGTAGATATAACTGCTTTTCTACAACTATTTGGATGAAATTAGCTTCGGTTGGGGCTTAAATCAGGGAATAGTTGTATATGCGCAGTTATTTCCTGATTTCAGGGGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGTGGATGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 152962-156270 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMIW01000003.1 Paenibacillus aceti strain CGMCC 1.15420 sequence003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 152962 33 97.0 33 ................................A CATCACCGGCTGCAGAGGGAGGGAAAAGAACCA 153028 33 100.0 33 ................................. GTGATCCAAACGGTGATAGCAATAAAGCGCGTT 153094 33 100.0 33 ................................. CCTTTTCAATTGGTCGTGACAAAATGCCTGCTA 153160 33 97.0 34 ................................C TCTACCCTGTACATAATTATTCGTTTGCCTCCGC 153227 33 97.0 35 ................................C CCAAAAATGGCGCCCAGACCACGACGAGAAATCAT 153295 33 97.0 33 ................................G ATACACGCTAACGCAAAGATGACAGCACCTTAC 153361 33 97.0 38 ................................C CGTTTTTAGAAATAACGAGATCAGCCCCAAAGTCTCCC 153432 33 97.0 32 ................................A CTTTCCATGAAACGGTCATGATCCTCATAATA 153497 33 97.0 35 ................................C GAAAAGGTCTTCGAAGGTGTAATCCGGGCAGTCAA 153565 33 97.0 33 ................................G TTTTTGGTCGTCCGTTTTCGTAATCCCAATCCG 153631 33 100.0 33 ................................. AACAAGGAAACGGGAGAGACAAACATATTTGAT 153697 33 100.0 34 ................................. GTGAAAGTGGATGCTGCATTGTATTTTTGGAACT 153764 33 100.0 34 ................................. CAGCAATATCCATTAGCGTCTCTGCTTGCCAGTC 153831 33 100.0 33 ................................. CCGTCCTTATTTACGGCATATGTCAGGTCCTTT 153897 33 97.0 34 ................................A TGTTGTGAATGCATACTGTTTTGTTCACAGACTG 153964 33 97.0 34 ................................A AGTTGCTGTTGGTTTAGCATCACCTTCATGCGCC 154031 33 97.0 37 ................................C TCTAATGCATAAAATCGCTTAGAGAGCCATTTCAGGC 154101 33 100.0 34 ................................. TGAAATGAACCGGTCTCTCCAGAATGATCATTTC 154168 33 97.0 32 ................................A TTTTGTAGCAGTCTCTTTCGTTATCCGTTAGC 154233 33 97.0 33 ................................A TACTAGAGCTTCTAGCGATCCATCCGGCGATCC 154299 33 100.0 34 ................................. ACCTCCTCAACTGGTTCGTCATAAAACCAACCTC 154366 33 97.0 33 ................................C TTTTTTCGATCTCCTTGATCGTCATCATGACCA 154432 33 97.0 36 ................................C CTTTACGTAGACAAGGCTGGCATAGATGGTGATCTC 154501 33 97.0 34 ................................G CAATATGTCCAAAGAAATCCCGGTCGCTGCTACT 154568 33 100.0 33 ................................. TTAATGAACAACTTGAAAAGGGCGCACGTCGTA 154634 33 100.0 35 ................................. TTGGAGCTGCTATGCAATCAGTCAGCACAGCGACA 154702 33 100.0 35 ................................. GGATGACTTTGGCGATGGATACCAGGCAGCTGGCC 154770 33 97.0 35 ................................G CCGCGCTGACGGGTTTATCCGTGAGCTGACTGACA 154838 33 100.0 33 ................................. GATAAGGATGTCGATTCTGGCGAATACCTATTC 154904 33 100.0 33 ................................. GTACCCTTTGCTCAAGTATTCCTGAGCTTTGAG 154970 33 100.0 33 ................................. TTAAACCTATGTTTGGCTCAATCGCAGCTGGCA 155036 33 97.0 34 ................................A TGTAGTCTAGACAGTGTAACGTCTTGATCGAATC 155103 33 97.0 33 ................................A GGCAGCGATACTTTCCCGCAACTAGCGGCTAAG 155169 33 97.0 33 ................................A TGGATGACAATATACCTTCGTCTTAATTTCCGA 155235 33 100.0 37 ................................. GCATGAACACCGTTTAAAACGTCATCGCCCTGTTCAT 155305 33 97.0 32 ................................A CGCAAGGATGCCGCGTGGTACTCGGAAAATAC 155370 33 100.0 34 ................................. TCTAGGTTAAATGTTTTTTGGCAGCCAGCATTAC 155437 33 100.0 33 ................................. TTTTTTAGCCATACACACCGTTTTCCTCCCCTG 155503 33 97.0 35 ................................C TTTATCATTGCGGGGAATAAAATACGATGGATCAG 155571 33 97.0 34 ................................A TGTATCCACCAACCGTCTTGCCGATAAGTTATTT 155638 33 100.0 32 ................................. GAACCGTTTAACCTTTTTAGTATACTGCGCTC 155703 33 97.0 33 ................................C ATTTTCACCGACGCACTGCCCAGACGATTACGG 155769 33 97.0 37 ................................C AAAAGCAATGACTCCGTAAAACATAATAAAAAAGATC 155839 33 100.0 35 ................................. CTTTGCGAGGGTCATCGTGGTCCCGACGTTGTACC 155907 33 97.0 32 ................................C TCGATCAATACGATGTCTTCGCGGGCAACACG 155972 33 100.0 34 ................................. GCTCGATAATTTCGTTGTCATAATACGGAATGTC 156039 33 100.0 32 ................................. AGATTCAGATCAGAAACCGAAGTATGTAAGTC 156104 33 97.0 34 ................................A TAGGGGAGACGGATGGAAATGAATCGGGTATGTA 156171 33 97.0 34 ................................G TTCCAGCCCTGGCTATCAGCTTTATAGCTGGAGC 156238 33 90.9 0 .............C.................TG | ========== ====== ====== ====== ================================= ====================================== ================== 50 33 98.1 34 GTCGCATCCTACGTGGATGCGTGGATTGAAAGT # Left flank : GCAACGTTTGAACCAATCATTTGGATCAACCATCGTTCCCCGAACCTCTGACGAAACTACAGATCGCTATTTTCCCAAAAACAGCGGTAAAAAAATTTTAACGAAACACCATATCGTTATTCGCTGGAAATCTCGACTTTAGTCCCCAAACTAGCTCCAATAGCGATCCCCAGTTTCATTAAAATTAGAAACAGCCCTTTTGAACGCGAATAGCGACATGACGTTTCGTTAGAGATGGCTGATAAAATTCATAGGCATCTGACAGCAGATTTTTCGGATTTCAAGAGGAAATTTTGCTAAAATAAGAGCAAAGGACGTAATATAGACTGTAACGTTGATTGGTGCGAACCCCAAGCGAACATGAAATCCCCGGGGGATTCGCACCAAGAATCTCTTGGCTTTTATCCATAAATGGAAAATAAAGAATATTTTCAAACTATCAATATTTTTATTTCAGTAAGAAAGTACCGATTTCTGGGCTTATCCGCCCTAATTTCGGA # Right flank : GGCAAACCAGTTTCGCTCTCTGGACGATTTAATGTCGCATCCTACGTGGATTAAAGCCATCCTTTGCTAGACATCTATAAATGTTATATACTGGAATTTGGTGAAGCACACTTCTACTATTGTGAAGCGATAATAGGGGTGTGCTTTTTTGTATACATAAGGGATTGGAGTTACTGTTTATATGAGAAAATAGTAGAACATACTTATTCTGGAGGGGGATAGCAATGATTTTTGAAATGACCACTCAAGTTCGGGTATCAAACATTGAAGAGGGGCAGAAATGGTATGAGGCACTTTTAAATAGAAAGCCTGATGTTATACCACATGAAGGCTTTGCGGAGTGGGAACTGGTTCCCGGATGTTGGTTACAGATTGCAGAAGGAATGCCTACTGAAGGCAATGGACCATTACGTTTTGGAACAACGAATATTGAAGCTGAAAAAGTTAGACTTGTTGAAGTGTTAGAGATCGATGATTTTGAAATTTACTCAAGACCAGAG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGTGGATGCGTGGATTGAAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 99412-101650 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMIW01000007.1 Paenibacillus aceti strain CGMCC 1.15420 sequence007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 99412 32 100.0 34 ................................ AAGAAAACTTAACCGCTTGGAATCGGGTTGAATT 99478 32 100.0 35 ................................ ACCCGTTCTGTCATTGGTCAACTCAAAACGGTGGA 99545 32 100.0 36 ................................ TCATTTTAAGGAGGAATCGTGATGAGCGAAGTTAAA 99613 32 100.0 34 ................................ TTTATCTCCGACCCTATCCCGGACGTACACATCG 99679 32 100.0 37 ................................ CTAAGCGCCGGGCCGCCATTTCCGCCGCTCCGCCCGC 99748 32 100.0 35 ................................ CGTTACCTAAGACAGAGAGAGCAGCAGAGAAGTTT 99815 32 100.0 34 ................................ CACAATTGCTGCGCTCCAGTTGCCTGTGTTGGTG 99881 32 100.0 34 ................................ ACGTATCGATCCGCAGCCTCAAGTTTGTAACTCT 99947 32 100.0 37 ................................ TTGGATCCCCATAAGCAAATCCATAGGATTCCGGCCA 100016 32 100.0 34 ................................ GTTTCTCTGCCTCTGCTACATGGAGGGCTACAAT 100082 32 100.0 35 ................................ CGAATCGCAAAAAAGCAGTAACTCCTTCCCCAGCA 100149 32 100.0 35 ................................ TGAATTGCCACAGAAGGTTGAAAAGATAATACCTC 100216 32 100.0 36 ................................ ATGTCTACTCCTCCCCTGTAAACCAATCAAATCCTT 100284 32 100.0 35 ................................ ATGAATATGGTCTGCGATATGATGGATTAATGGGC 100351 32 100.0 35 ................................ TTAAAATCTTGGAATCGATTTGAAGCACGCCCAAG 100418 32 100.0 35 ................................ CACCTACTCTAGCTTTGTCCAGCAGCTTATCTGCA 100485 32 100.0 33 ................................ GGGCATGTGTACCTATAGCACAGATATTGACGG 100550 32 100.0 36 ................................ TATTCCGTCCTGTGCTAACCCGTCCATGCAACGATC 100618 32 100.0 34 ................................ GTTTGTGTCATCTCCTTGTTGTTAATTCTATTAT 100684 32 100.0 36 ................................ TCGCTTCGCCCCTTGACGGACCTGTGCCTGGAACAG 100752 32 100.0 33 ................................ CCGAATCTCGTCCTCATCAATGCGTTTAATCCG 100817 32 100.0 35 ................................ TTGCTTCGCGATCTTGATTGCCATCCTCTGAATCC 100884 32 100.0 35 ................................ CATCTGGCTTTTTACAGCCTTCATGGCCATTAGGA 100951 32 100.0 35 ................................ TACACAAAATATGGACAGTAGTTGCGTGGAATATA 101018 32 100.0 34 ................................ CCTAGTTGGCTGCTATTCAAAAAGATTAAAGATG 101084 32 100.0 34 ................................ CGGAAGGGAAAACGTATACGAAAAGGCACGCTGC 101150 32 100.0 35 ................................ AAAGAGTCCGGCGCTAAAGTAATTGATACCTTTGC 101217 32 100.0 36 ................................ AGGCATTAGACCATCTGCAAGATTGACCCTGACCTC 101285 32 100.0 35 ................................ ATTGAAGAAGGATGGGCTCGTCAGGAGCCTGAAAA 101352 32 100.0 35 ................................ CGTGTGCTGGCGCATTTGGGCCGCCCTGATCTCTG 101419 32 100.0 33 ................................ GCAGTGGGGTGATTTTCTTAAGCGATGAAACAA 101484 32 100.0 37 ................................ TCTCCCCATGCACGAATAGTGTAATAGAATCGGTCTT 101553 32 93.8 34 .........CC..................... GCAAAACGCCATGGCCTGTCTATCGCCAATTGTT 101619 32 90.6 0 ...........T..........A.T....... | ========== ====== ====== ====== ================================ ===================================== ================== 34 32 99.5 35 GTCGCATCCTTCGTGGATGCGTGGATTGAAAG # Left flank : CCGCCGTTTCTATGGAAGTAGGTGTAGACGATGCTAGTATTGGTCACTTATGATGTAGGTACGACGCATAGTGCTGGGCAGAGAAGACTGCGGCAAGTGTCCAAGGTATGCCAGAATTATGGACAGCGCGTGCAGAACTCCGTGTTTGAATGTGTAGTGGATGCCACAGAATTTGAAGTTCTGAAAATGAAACTGATCGACATCATCGACGAAGAGCAGGACAGCCTACGATTCTACCAGCTTGGCAACAACTATAAGAGCAAGGTAGAGCACGTCGGAATTAAGGAATCCCTCGATCTCGAGGGCCCCTTAATCCTGTAGATGACTCCTGTAAATCCGTGGTGCGAACCCCAAGCGAACATGATTTCCCTAGGGGATTCGCACCACGAAAATCATGGATTATATCCATGTATGTAATAAAATGTAATTATGAGAAACTCTTAAAAGTAGTTTTTTTATGTAAAATGCGGTTTTCGGGCTCTTTTTACCCGAAAATCGGA # Right flank : GCCACCATGCTTTCTAGATCCTCAACGCTTGGCTTGTCGTATCCTACGTGGATTCATGAAAGTAGTTTGAGTTTTGTTAGCGGATCGAGCATGTTTACCCGTAGGTATAGTTCCCAGAGTAGGTACTCAGCTTGAGTGTACGGCTTTGCATGAGAAACTAGTTGTGAAAGAAACAGAAATAAATAACCCGATTTTAGTAATGGAGGAGAAGTGTCTAGAAGAGTTGAATATAATATTGATCAGTTTAAAATAAATGATCTAAGACCGATAAACATTAAGTGCGAACCCCAAGCAAACATAAAATCCCTGGGGGATTCGCACAAAAAAATCTTGATTTTTATCCAAAAATGTGATTAATAAGCAATTATAAAATCTCCAGTATTTTAATTTTAGTAAGAAAGTACCGACTTTTGAATATTTTTGTTCAAAATCGGAGTCACATCCTACACGGATGTGTGGATTGAAAGGTGCGACTTGCTCCGATACTTGTCCAACAATTT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTTCGTGGATGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 102085-102776 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMIW01000007.1 Paenibacillus aceti strain CGMCC 1.15420 sequence007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 102085 32 100.0 35 ................................ GTGCGACTTGCTCCGATACTTGTCCAACAATTTCC 102152 32 100.0 35 ................................ ATAAGTTGCCCAGTAATTCAATGCGATTACGATTC 102219 32 100.0 32 ................................ GACATACACAATTGGCAAATCCGTTACGACTG 102283 32 100.0 34 ................................ TTTATACGATACACGCCATTAATCTTCGTTTTGA 102349 32 100.0 35 ................................ CCCCCTATCCAAAAGCGGCCGCCAAGATTTATCAA 102416 32 100.0 34 ................................ TTTAGGAGGTGATGATTTGAATTTGTTGCCATTA 102482 32 100.0 34 ................................ TTTTCTTCTACCACGGTCTTTCCCTCCTTTTTTC 102548 32 100.0 35 ................................ TCGCCTTTGCTCATGTCTTACTCACCCCCTTTCCC 102615 32 100.0 34 ................................ TCTCAGAGAGAAAATAGTAAAAGGAGACACGTGA 102681 32 100.0 33 ................................ CTCTAAGTCTGGATGTAAGTAAATAAACTTTTC 102746 31 93.8 0 ....................A.-......... | ========== ====== ====== ====== ================================ =================================== ================== 11 32 99.4 34 GTCACATCCTACACGGATGTGTGGATTGAAAG # Left flank : GCAAAACGCCATGGCCTGTCTATCGCCAATTGTTGTCGCATCCTTTGTGGATGCGTAGTTTGAAAGCCACCATGCTTTCTAGATCCTCAACGCTTGGCTTGTCGTATCCTACGTGGATTCATGAAAGTAGTTTGAGTTTTGTTAGCGGATCGAGCATGTTTACCCGTAGGTATAGTTCCCAGAGTAGGTACTCAGCTTGAGTGTACGGCTTTGCATGAGAAACTAGTTGTGAAAGAAACAGAAATAAATAACCCGATTTTAGTAATGGAGGAGAAGTGTCTAGAAGAGTTGAATATAATATTGATCAGTTTAAAATAAATGATCTAAGACCGATAAACATTAAGTGCGAACCCCAAGCAAACATAAAATCCCTGGGGGATTCGCACAAAAAAATCTTGATTTTTATCCAAAAATGTGATTAATAAGCAATTATAAAATCTCCAGTATTTTAATTTTAGTAAGAAAGTACCGACTTTTGAATATTTTTGTTCAAAATCGGA # Right flank : GTAACTTGATATTATGGATAAAATTACCCTAATTGCATCTTTTATAAATAAAACAAGACTTCCTCCACAGGTATAGAATGCGGAAGAAGTCTTGTTCAATTTTGATATAGAAGTTTCATCCTTATTGGGTTAAGGGATCACGGTTGTTCAACGGTTGCCGAGTTGTTCTTCGATTTCTGCTATGATTGTCCGTCCGCCTTGATCATACCAATCCTTCACGAAATCATCGAAGGAATCGACGGGGATTTCACCAAGAACGATTTTGTAGAAGGTTTCGTTTTCGAATTTGAATAAGGTATCCCATTTCTGCTCCATAGTTGGTGTCATGGATGTAAATTGATTGTAGACCTCTCTATCCATTTGCTGCGTGACAATTTCGCCACCATATAGATAGGCGTGGGGAGCGGCCCAATCGCTAACATTCATCTCTGATCGTTGCTCTCTTCTCAGCCATCTGTTGTAATGTCCCATCATTTCGGGGGATAACGAATATGGCGAGG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACATCCTACACGGATGTGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCACCTCCTACACGGAGGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.50,-7.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 921-152 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMIW01000063.1 Paenibacillus aceti strain CGMCC 1.15420 sequence063, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 920 32 100.0 35 ................................ AAAAAGTACAGAGCAACAAAAGAAAATGTAATCTT 853 32 100.0 35 ................................ ATCCGGTGCTAAGATTTTTTCTAACTTTCCTTTGC 786 32 100.0 36 ................................ GTACGTGTCGCGCCGGAAGCAACCGGGAAGTCGATG 718 32 100.0 35 ................................ CCTTTGCGGTCTTGAAGTCCTGTGTACCACATGAT 651 32 100.0 36 ................................ ATAAAACGAGTTTTCACGCGAAAAAAGGGGAGACGC 583 32 96.9 35 .............C.................. ATGTCGTACACCTCCTTTCCGGCTTACGAATAAGA 516 32 96.9 36 .............C.................. CGTACAGCATAATACAACAGCAGAGCTATGCCACGT 448 32 96.9 33 .............C.................. GGAAGTGCAGCCGATCTACGGAGGAAACTAGAC 383 32 96.9 34 .............C.................. TTCGGATTCTGTCAGGCTCTAGCTCCGGACTTCT 317 32 93.8 36 ..........A..C.................. GACGGGGAAGCAAGCGCAAGTAGCATCGCGCGTAAC 249 32 93.8 34 ..........A..C.................. TTGTGCATGCTTAAATCCGCTCGAAAATGTAACC 183 32 68.8 0 .A........A..T.....C..C.G..ACC.C | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 95.3 35 GTCACTCCTTGCAAAGGAGTGTGGATTGAAAG # Left flank : ATAATCATTTAAAGACAGTGATGGCAGAGGGATGTCTTAGTGATTGGTATGAAAAACTAAATCATGCGGATTCCAAGTATGGAGAAAATATTAAAAAGGCAGACAGTATTTCAAATATCACATTGGACAAATATAAAATAAAAAGCTCAGATGAAAGCAAAGAAGTTTCACTCATGTCATTAGTGTTTCAATTGAATCAATTGCTAATGCTAATTAATAACCCTATACTATTTCCACATTTAGCTTACGTTGAGATGATAAATGGAGTTTTAAATCCTAAAACGAGTAAAGATTTGGAGCATTAGAATCGATTTATAACGCCATTAGCAGTTGGTGCGAACCCCAAGCTCACATGAAATCCCTGGGGGATTCGCACCAGCGTAGTGGCGCGGGTTCTCGGCATTTTCAATACATTTTTTAACAAATAAATATGCTGAAAATGGACATTCGCACTTTAGGGCCTCTCAGCCCTTGTCCCATAAGGGCTGTTTTGTGGCGGA # Right flank : CCCTCTAGTAATCTAACGAAACACCATACCGCTATTTGCTCCCAAACAGGGCGATTCGAAATCTAACGAAACACCTGCTGCTAGAATAAAAAGTGGACACCAGTTAACAGACTGGAGATAATGAGACCAACGGAGGTGTCCACATGGGAGAA # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCTTGCAAAGGAGTGTGGATTGAAAG # Alternate repeat : GTCACTCCTTGCACAGGAGTGTGGATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.00,-3.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 9912-8811 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMIW01000063.1 Paenibacillus aceti strain CGMCC 1.15420 sequence063, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 9911 32 100.0 36 ................................ TTCCCACCAAAGCGAAGGAGAAGAACCGCGATTTCC 9843 32 100.0 33 ................................ ACTATCATTTTCGATTGTAAACTTAGCGTTGGT 9778 32 100.0 34 ................................ CGTGGTACTCAAAGACAAGCGGCATACCAATTAT 9712 32 100.0 36 ................................ TCAGAGTAGAACCTGTTATTAAAGAAGCTGATATAT 9644 32 100.0 35 ................................ ATACTGGACTTCAGAAGTGATGGGACAGGGGAAGA 9577 32 100.0 36 ................................ AACGATGTTTTCAGCGATGGATTGGATTGTGTCGTC 9509 32 100.0 36 ................................ TGTGTCAGCTAGGGATTTGACTAGTGGTAACACAAA 9441 32 100.0 35 ................................ TCAATGATGGGAGCATATCATTATTCCTCGGCGGT 9374 32 100.0 35 ................................ CCGCAGGGATGTATAGCCCGTTTCCTCGGATCAAC 9307 32 100.0 35 ................................ AAATGTTATATTTTTAAGCTCCATGCTCAAACCTC 9240 32 100.0 35 ................................ CTCATACGGAAAATAAAAGCCGACGAATTGCGCAG 9173 32 100.0 33 ................................ ATCTAACAGAGTATACATAACAGTAGCTGGAAA 9108 32 100.0 33 ................................ GATAAGGATTGGTACAAAGAGAAGGCAAAGAAC 9043 32 100.0 35 ................................ ATCGATGCGGCGAGCGCGGAAGATGTAAACGAGCT 8976 32 100.0 34 ................................ ATAATGTCTCTACGGAGCGGAGCTGGATTGGATG 8910 32 100.0 36 ................................ ATGTAATGTAAGTATTTCAGAGTGTGAGTATATGGT 8842 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 17 32 100.0 35 GTCACTCCTTGCACAGGAGTGTGGATTGAAAG # Left flank : GTCGTCTAAACTAATCTCATTCATCATACACGGGCCCCAGTCTGTCCGCTAGGTGGGGTCTATTTGACGTTCACGGAGTGTGGATTGAAAGTCGTAATCGTCCAGAGCCTTCGCCAAAGAAGC # Right flank : CCTGCATACACCTCACTTTCACCCGCTCATACAGAAGTCCCAGTAAACCCATAATCTACAGAAATGTCAGTTGTGCATCGATAATCGCTTGTTTTAGCGCAGAACAACGCAAATTCAAAAGCAAATATTAAAGAAAAAACTCATGTCTATAGCAGATGTGAGTTTTTTAGCTTTTTTTAAAGGACGATAAAGGAAATTTAGGTAATCATGGAGAATTATATGAATATGATACTATTTTCCTACTTAACTAGTTCATAAGGGAGGGGTTAGTTTGCCGGAGGATTTTACAATAGGAGATCTACAATTAGAGCAGTTGCAGGATATGGTTACCAAAGTCTCTATGGACCTTAGGAAAGCAAAAAACAGGAAATTTGAAGGTTCAAGTGTACAAGATCAGGGATTCTATGAAATACGCGTAGTTACTCCTATGTTTGGCGGGAGCGCTGAAGCAGGGAAAATAAATGAAAAGTATCCTATACGCAGCTCTTCTATTCGTGGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCTTGCACAGGAGTGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 6405-7173 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMIW01000070.1 Paenibacillus aceti strain CGMCC 1.15420 sequence070, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 6405 32 100.0 35 ................................ ACGACTTTTATGCCGTCCATCGTTTTCCGATTCAC 6472 32 100.0 37 ................................ AATCCTGTCCAGGACAGAACGGGACAAATACAAGGGC 6541 32 100.0 35 ................................ CAAAATCCAGCCGCCCGCCTGAATCGCTATGTAAA 6608 32 100.0 36 ................................ ACCTGTGTAATCGCCATTTATGCGGCCTCCTTCGTT 6676 32 100.0 37 ................................ ATTGCAATGGTCTGGAAGGGCGGTCACAGAAGAAACG 6745 32 100.0 36 ................................ TTTCCAAATCTGAACGTTATTATTTCGACCACGAAG 6813 32 100.0 34 ................................ TGTCTGATCGTCTCAAACAATTCCCGCTTATCTA 6879 32 100.0 34 ................................ AAGGTTTGGACCGTCTTTGTCAATTCAATTGAAA 6945 32 100.0 35 ................................ ATTGTTCGTTACTCTGGAAGTTTTGATATTAACAG 7012 32 100.0 34 ................................ TCCTCTCCGAGTTGTTTGATCATATCGAGCAAGG 7078 32 100.0 34 ................................ CGGATCTTGCCCAGTACACTGCGCCGAAGCAGGG 7144 30 84.4 0 ........................--.A.GC. | ========== ====== ====== ====== ================================ ===================================== ================== 12 32 98.7 35 GTCACTCCTTGCACAGGAGTGTGGATTGAAAG # Left flank : AAGAAAAAAGATGCATTTTCGCAGGAATTTACCCCCTTAGGAGGATATCCTTGCTAAATTCCTGCATATTTGCAGGCTTTTTTTCTAAAGGGGGACAGGAAGGAGATTACTACGGTAAAATAGAAGTTATCATTAGCAATAAGTGGCAGGTTACCTCAAAAAGAAACTGGGGTTGCTCAAAAGTAGGTGGATGTTACCTAAGTAATTCGATGTTTTGCGCAAAGTAACTGAGGTACGGCCAAAGTGTGAAAAGTGGAATGTAACTCTGGCGATCGGCCAAACCAAGTGTGAAATTGTGGAAATGTGGTGCTTCATTCCGTTAGAAAAACACTGGTGCGAACCCCAAGCTCACATGAAATCCCCGGGGGATTCGCACCGACGTAGCGGCGCGGCTTCCGGGCATTTTCGATACATTTTTTCACAAATAGTTTCGTTGAAAATGGACATTCGCACTTTAGGGCCTCTCAGCCCTTGCTCCATAAGGGCTGTTTTGGGGCGGA # Right flank : TCAAACCCAGCACACCTGTCCATAATGGTTTGAATCAGTCACAATAAATCCATCACACATACGAAAGGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCTTGCACAGGAGTGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //