Array 1 2051-2413 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKDE010000049.1 Capillibacterium thermochitinicola strain UUS1-1 sequence49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2051 32 100.0 35 ................................ GCAATTAACGGGATCATCGCGCCAAAAGTTTGCAT 2118 32 100.0 33 ................................ CACTGCTCCACTCGTTACCACCTCTCTTTATAT 2183 32 100.0 34 ................................ TCCCACTCTCCAAAACACCAGGCCTGATCACAAC 2249 32 100.0 34 ................................ GCCAACTCCTTGAAAATTGGTTCGGAGGCGTGGG 2315 32 100.0 35 ................................ AATGAAAGCGATGATGGCGCTGGCTGCATCCTCGC 2382 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 100.0 34 GTCACCCCTCTTACGGGGGTGTGGATTGAAAC # Left flank : GATGCCTACCCACCATTTTTAATGAAATGATGGTGATATATGATGATGGTTTTGATTACTTATGATGTGCGTACTGAAAACGCCGAAGGGATGAAACGCCTACGGAAAGTGGCTAAACAGTGTCAGAACTATGGGCAAAGAGTCCAGAACTCTGTATTTGAATGCCTAGTTGATCCAGTCCAATTTGCTCAATTGAGAAAGCAACTTGAACAAATAATCGATCCAAACGAGGACAGTTTAAGGTACTATTATCTCGGCTCAAATTGGAAAAATAGAGTTGAGCATGTAGGAGCTAAGGTTACATATGATCCGGAAGGAGTATTAACTGTTTAGCGCGAAGTACAAGCACCCATTATTTCCCTAGCTTTCTCGCGGAGCTAGTTAAACTGAGGGTTTGTCTGTATTTGGTAAGTTTAAATTGAACTTATTAAGTAAAATTAACTATGTTCGCGGTATTTGTCGTTTAATCCCTAGAGCCATTTGACTTTAGGGATATTACT # Right flank : TGGATGAAGTCAATCATTGCGGTATAGCTGGGCAGCGTCACCCCTCTTACGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCCCTCTTACGGGGGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : NA // Array 1 1634-1988 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKDE010000018.1 Capillibacterium thermochitinicola strain UUS1-1 sequence18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1634 30 100.0 36 .............................. AGATTCATATCGTCCGCCCAGGGATGGGCTACACCG 1700 30 96.7 35 C............................. CGCTTAAACTCCCGCAAGTCTTCGCCTTCCAACAG 1765 30 96.7 34 ......G....................... TGGCCGAAAAAGACCAAACCATTAATGCCCTCAT 1829 30 96.7 35 ..............A............... GAGTACTAGGTGAAGCGCGCCCCCCGCGCCCCCAC 1894 30 100.0 35 .............................. AAGACCAACTGGTACGGCTCCACAACCCTGTCGGT 1959 30 93.3 0 ........CT.................... | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 97.2 35 GTTTTTAGTCTACCTATGAGGAATTGAAAC # Left flank : ATACAATCTATTTTAAAGATCCGGTCATCCTTAGATTTCCTGTTTCTAAGATTTATACCTTCAATAAATTCGGTATAGAACGGCTTGCTGTGGAGATAGGGGGGCGTGAGTTTTATAAGATGGCGGATAATGTTACCCTCAAAAACTGATCTATTCCGGCCTTCCTGCCGCTATATCATCAGGCTCAAGCTTGGGCTCTCAAGCGAGCCGGGGAAGGGACCACGGTGCGGTGGTCTTTCCGGGACAGGGTAGAGGAGAAGCAGATTTTGATGTTCAAAGATGGAGGAAAGAAGGAAAATAGTTATAATAATAGAAATATAGACACAGAATTCTTCTAAATGAAATTGTTGTCGACCCCCGGTAATGTAAAAAACCCGGGGGATCGACGACAACTTCAAAATTTGAGTTTTATTAGATTTTTCAAGGAATTCACGGTTTTCACACTCAGTCGCGTCCCCTTTCCCCAGGCCGCACTAGGTAAAAAAAGCGCACTTTAAACG # Right flank : CCCGGTCACGCACGATTTTTACGATAAAATTACCGGAACTGGTACTCTTATTAAGCTGTGGGGTGATATAGCTGGGGTACGAAACATATAGCCCATTGTGAAATGAATCGGGCTATAACCTGCAATCCTTCAATAATAAGTAATAACATCCGGATATAGTTCCGTAAATTGCTTTGATAACAAGCTTACCGTAAAATTGCTATGGGGTGAAATATATCTTATAAAAGATTTAAAGGATGAATAAAAAATCCGGTTAAACCAACCGGATTTTAATATATTTAATGGAAATAATATTAAGAATATAAATGGAAAATAATTACTTGTAAATCAAAGGAATTTATAGTATACTTAATATATCACTATTATAACTTTTATTAAAGTATACCTTATAAGGAATTGAAATATAAAAGTTATGATAGTATGGAAGACAAATAGCCTACCTATAAGGAAAAACCTAAATAGAAAGGAGGACGGAAGCTTATGAATACGAGAACAAGCTA # Questionable array : NO Score: 8.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGTCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 2 10075-11760 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKDE010000018.1 Capillibacterium thermochitinicola strain UUS1-1 sequence18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 10075 30 100.0 36 .............................. CTGTTCAGGATTAAAATTGTAGTGCTCAGGTGGAAA 10141 30 100.0 35 .............................. TATAATTAAAATGTACGGTATACCCGAACAAAAAA 10206 30 100.0 36 .............................. ATGGTTGCCCGAAAAAACGGGAAGACCCCGCTTATA 10272 30 100.0 36 .............................. CGCTTTTGAATTGTTCCCGGCGGTCGGTGATATACG 10338 30 100.0 36 .............................. AGGCCTATCTCCGGGAGGAGGCGAGATGAAATTTTC 10404 30 100.0 37 .............................. AATCCGAATTTGGGCTGTCGTCAATTGATGAAGCTAA 10471 30 100.0 36 .............................. GTGAGGGCGATCAATGAACGCATGGAGTCGATCGTC 10537 30 100.0 36 .............................. TCCAAGCCGTTTCCCGGGACTGTTTGGCCACGGCCA 10603 30 100.0 35 .............................. ATAACCCTCTTGTCCAAGACCGGGCGACCGCCGAG 10668 30 100.0 37 .............................. ACGTCCGGTTCGCAAGACAGGCAGACGGCCGCACCTC 10735 30 100.0 36 .............................. GTCGTCCCTGACCGCATCATCCACGATGAATACGTC 10801 30 100.0 36 .............................. TAATATTCGACCAGCTCCTCGTAACTGTCCGGGATG 10867 30 100.0 36 .............................. CGGAACGCTCTCAACTGCTGAACCAGCAAACCCCGC 10933 30 100.0 37 .............................. AGCGCACCGGCCGACAGACGAGCGCAGGGTCACGATG 11000 30 100.0 36 .............................. TTCGCTCAACTTGCGGTTTTCTTCAAGCAGTCGACC 11066 30 100.0 38 .............................. GGGATTTTATGGAAGTGATATTCGGGAGAATGGAATGT 11134 30 100.0 36 .............................. TTTCCATCCATCTCAATGCCCATGATGATCCGCGGG 11200 30 100.0 36 .............................. TAGTACCTGGTTGGGGGCTAACCTTAACTATCAAAA 11266 30 100.0 37 .............................. GCCGAACGGTGCAGGATAGCAAACCGGGCCAAGGCTG 11333 30 100.0 35 .............................. CACTGTAACAGTTGGTAACGTTACGGCGTAACAAA 11398 30 100.0 41 .............................. ATGCCGCCCAAACGGAAACCCCTGCACTGTTTGTGGTGCAG 11469 30 100.0 36 .............................. ATAAGCAATCCAATCAACAATTTCTTCATTCCATGC 11535 30 100.0 34 .............................. TAGAAACAAGCGCCACTTTTTTAGCGACGCCTGC 11599 30 100.0 36 .............................. CTCCAGGCTGGTAGTGAATCTCTTGACAAAATCTTC 11665 30 100.0 36 .............................. CAAAGATGACCGCGATCACTTTTACAGTCGGGCTTT 11731 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 26 30 100.0 36 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : CCGCAACGAATATGAACGGACAAGAATGGAAAAATACGAAACAGTTACTGTTATTCCGTATTGCTTTTTTGCTGAGGTTTGCAAGAGTTCGCCAAGAGAAAGAAAGTGGTATGAGGTAAGGATTCCGTACTGGTACGCAAGAAGACATTCCCGGCTACATGAAGGGGTGTTGTTCTGTGATTTAACGTATGATAGCAAGTATGGAGCATTTTTGAAGCCGCAAGACAGAAGTTAACTTCACAGATATAATATGGCATGGGGTTAGCTTGTTATCAGCTTTTTCCCACTAATTTATTCATGTTATGGCTAATAAGGAAGCTGTCTTTTTTAATGCTAAATGAATTTGTTGTCGACCCCCGGTGATGTAAAAAACCCGGGGGATCGACGACAAACATAAAATTCGATTTTTCTTAGCTTTTTCGAGGCTTTCCGCGGTTTCATACCCAGTCGCGCTCCCTTTCTCCGGTCCGCACTGGGTAAAAAAAGCGCACTTCAAACGG # Right flank : CAGCAGGCAAGCCGGGGTTTTAGTTTTTCGATGAAATCGGCTTGACCCCTTAAATCCGGAGATTATGCCACAAAAGTTTTAGGTTTTATAGAATTACTAATAACAGCCTGATAATACTTTTCTGGCGCCATATTCTTCAGGCTCCCATGGCGGCGGCGCCGGTTATAATAATCCATATATAATGAAATCTGCTCATAAGCTTCCGCATAACTGTTAAACTGATGCCTGCTGTAGCAATCATCTTCGAGAATCGAATGAAAGGCTTCAATATGCGCGTTTAAATTTGGCGTGCCAATAGGGATTCTTTCATGGATTATGCCAAGCTTGTGGCATAATTCTTCAAAGAAATTGGCAATGAATTGTGGGCCATTATCCGTCCTTACCCGCGGCATTTTCATTCCAGGTTTAAGGCCACGTTTTTTCAAAGCGTTCCGTAAGACCCGACAGGCATCTTTGGCCGTGCAGGTTAAGCCTAAATGATAGTCAATAACACAGCGGTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 75031-74075 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKDE010000009.1 Capillibacterium thermochitinicola strain UUS1-1 sequence09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 75030 32 100.0 34 ................................ TTGTCATCACGCTAAATATCGTCTTTGCCGCGGT 74964 32 100.0 36 ................................ TTCACTTTCCACCCGCGATCTCCGCGTACAATCCAG 74896 32 100.0 34 ................................ TGGGGGGAGAGTTTCGATTTTCCGGGCCAGGGCG 74830 32 100.0 34 ................................ TGGAATATCTTTATAGCAAATCTGACCCAGAGAT 74764 32 100.0 34 ................................ GCCACCCAACCGAAGCAATTGCTGCCGGGAAGAC 74698 32 100.0 33 ................................ CTTCGTTGTCTTAATTATAGCATAGATAATCAA 74633 32 100.0 34 ................................ GTTTGAGAGGTTGCCTCATGAACCGTCACGATGC 74567 32 100.0 34 ................................ TCGTTTAATGTTGACCATATCCCAGAGGAAACTC 74501 32 100.0 35 ................................ ATAGGCGAATTGGACTGAGGCTTTGTCCGAGAGGC 74434 32 100.0 33 ................................ CGCCAGTAAACGGAAAACCGCTCGGCAGACGGG 74369 32 100.0 34 ................................ CGGTATCTGTAGTCATCGTGATGGCCGTCGCCCT 74303 32 100.0 34 ................................ AACGTGGCGCCGTTGGTTATCGTGAACGTTTTAG 74237 32 100.0 34 ................................ TTGCGGGATTTGTTTTTTCCGAGCACAAGAACTT 74171 32 100.0 33 ................................ AGGAAACCAAGTCCGCGGATCATCTAGATCTAC 74106 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 15 32 100.0 34 GTCACCCCTCTTACGGGGGTGTGGATTGAAAC # Left flank : CCGGCAAACCGAGGGAATCTCAG # Right flank : AAGACTAATGACTAGTTGAAGGGGGTCCTCGGACTTCACCAATTGATAGAAATCACATTTCATGCATTCACCGAATTTTTTCGCAAATTGCCCTTGAACTTCACCTTTGCAGTAGGTTCCGGAGACAACCCAGCAGGCTCTCCCGGAGCATTGGCCGCCATGAACTCCATCCAATCGTTGTTCGGTCGCGGCCGGACAAACACCCAGTTCGTTTACTTTGGCACCGCCCGGTTCCCGGCCGCATTTTTTGTACTCCCAACAGTTCAGCTTCATCATAACGACCTCCAATTTTGTAATATATAATATATTCGTCTAATATCGTACGTCGCTTGAGTGAATTTTGCGTTGCGATGAAGCCTGGGGACATAGGCCTATTGGGCCTCCTTTAAAACCTGCTTCAGGATGGCAAGCCCCTTTGCCAGGTCGGCTTCGCTGATATTCAACGGGGGGACCAACCGCAGGGCTGTTGGCGCGACCGCGTTGATGATTAACCCCTGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCCCTCTTACGGGGGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : NA //