Array 1 3939-4271 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGEB01000067.1 Micromonospora sp. NRRL B-16802 P440contig32.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3939 28 100.0 33 ............................ GTGGCTGCGCGAGGTCCGCGACGACTTCCCGGA 4000 28 100.0 33 ............................ GTTGGTCCGCGACTGCTTGAGGAAGATCTGGAA 4061 28 100.0 33 ............................ GGCACCGGTGACGTTGGCGAGCAAGCCGGCGAG 4122 28 100.0 33 ............................ CTTCCCGGACCCGTTCAAGCTCCAGATGCAGAG A [4139] 4184 28 85.7 31 .GA.........T.T............. GTCCAGGAGACGTGAGCAATGCCCGAAAGCA T [4208] 4244 28 71.4 0 AC......T..A..T.........C.GT | ========== ====== ====== ====== ============================ ================================= ================== 6 28 92.9 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : ACGTTGCCGCCGCACACCGGGCGGACGCCCTGCGCTCCTCAGAGCCGGATGTCTGGAAATCCCTGTACGACGCCGCACGAGCAGAGTCCGGAGAGCTTGGCGACTTCACGCCGTACTGGGTGTTCCCGGGGAGAGCAAAGATCGAGCGGCATGTCCTGCCCTACCCGCTCAGTCGCGACCAGGCGCGGTTCGACCGGCTCAAGGCGGACCTGGTGCGATACCGGCTCGCTTTCGGTCAACCACGACAGGAAGACCTGCTACTTCTTCTGCAACGGCAGCCTATCGAGACCGACGTACCTGAGGTCCTCGATCTACGGCCCCGACCGGATGGCAACCACCTGTAAGGACAGCTGGCCGACGACGCGAGCCTTTGATTACGCTGCAGCCGAGGATGCTTGGGGTGTTCTCCAAACGTCGATACCGAGACCAAGGGAACGATCTTGCAATCCAAAGTGAATGGAAACCGCGAAGTCGATCTCTAACGCTGCAGGTCAAGAAGT # Right flank : TTCGATCCGTTGTTCGCGTTGACGCCGTTGACTGATGGAGGCCACGCGACGTAACTAGTCGGCGCACGCCAAGCCGGAAGCACTCAACATCCTGTCTGCCATCGACCCGCTCTTAGGGGAGCAGGCCGGCGCCCGGCCCGCCACGGCCCGCGAGCCGCGACGCTTCGTTCGTACACTGGCGGGCCGGGCGCCGGTCTGCTCGGCTTGCCCGGGTCGATGGCAGACAGGATGTTCTCACCGCAGCCACCCACTGAGCCGGCGGCCGCGGACGACCTCCGACCATCCTGGAGCCGGAGCGCCCCCGCCGGAGGCGCTGTAGCCGCAGCCCCGGGCGGCGGCCGAACCCCAATACGAAGGCCTGGTGGTCCGGGTTAGCGGGAGCCTCTTCGATGGCCCTGCCGTAGGTCGCGGATAGACGCCTTGCCGGGGGGTGTTCGCGCTACGACCGGTTCGGAGCCGACACGGGATCGGTGATGCATGACCTCCGTGGGCCGGGCCGA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 33361-35419 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGEB01000078.1 Micromonospora sp. NRRL B-16802 P440contig42.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================= ================== 33361 28 100.0 33 ............................ CGCATAGTCCGAGGCGAAATCGATCACCGTTGC 33422 28 100.0 33 ............................ CGCGCTGACCGACAACTACCTACGGCCGGCGCT 33483 28 100.0 32 ............................ CCCCTCGGCCACCAGCGCGTTGAGCGCCGCCT 33543 28 100.0 33 ............................ GCGGGCGTCGTCGTTCACGCCGGTGGTGTTGGA 33604 28 100.0 34 ............................ GCAGGCCGCCAGTCAGCGAGGGCAACGCGGGAAA 33666 28 100.0 33 ............................ GAACCCCAGCATCTCCTACAACGACGCTCTCAG 33727 28 100.0 0 ............................ - Deletion [33755] 33755 28 78.6 33 .G.TG.GGT................... CGGTGCGGTGGTGTGGGACGGCCGTCAGGAAGA 33816 28 100.0 33 ............................ GTTGTCCGCCGCATCCACGGCCAGGGCCCACCC 33877 28 100.0 34 ............................ GCAATTGGTAGCCGAGGGTCGTTTTCCCGCACCC 33939 28 100.0 33 ............................ TGCCCAGGGGGTCGGGTCCTGGAGGGCGTCGAC 34000 28 100.0 33 ............................ GGAGGCTGAACGCCGCCCGGACACCGCCCTCCA 34061 28 100.0 33 ............................ CGGTCAGCGACGACGCGCTCTTTCCCCGCCAAC 34122 28 100.0 33 ............................ TGGCGCTACTGTTGTTCTTGGAGGACAGTTTCT 34183 28 100.0 33 ............................ CGGCCTCACCGTCGGATGGTGATCGGGTGAGCC 34244 28 100.0 33 ............................ CCACCGGCCGGACGGTGAGCCGTGGCGGCACCA 34305 28 100.0 33 ............................ TGCCGCCGATCTCCCCGAACCGTTCCCGTGCCC 34366 28 100.0 34 ............................ GGCTGTCTCTCACTCCTGGGCGGATGGCTTGCCC 34428 28 96.4 33 ..........................T. CCGGGTGTACGTGGCGTACCACGGTGACAGCCC 34489 28 100.0 33 ............................ CACCGCGACGGCGGCCATCACACGGCCCATCTC 34550 27 96.4 33 .....-...................... CCCGTGACGAATACCATCGGGCGGTTGTCCGGC 34610 28 100.0 34 ............................ CTCCCACTTGCCGGTCGTGACGTTGAAGCCGAGC 34672 28 100.0 33 ............................ CGAGTGGGGAGCCAAGCGCGGCACCCCGCCCTC 34733 28 100.0 33 ............................ CTTCCGCCAACGCGTCTGGCCCCGGATCCTGGC 34794 27 96.4 34 ..............-............. CGCCTTGTAACCCCAGATGCCGACGTCCACCCAC 34855 28 100.0 33 ............................ TGCCGCGCCGATCCGCCCGCGTAGACCGGTGAT 34916 28 100.0 33 ............................ GTGGAAGCGCGGCAGGTGCAGTCGGGGCAGGCG 34977 28 96.4 33 .....T...................... GGGTGTCCTTGGTCTTGTCCCCCAGATCGGCGC 35038 28 92.9 33 ......T.A................... GAACTACCTGAATGACCCCATGGGTCGGGACGG G [35055] 35100 28 100.0 33 ............................ GGGGGTCGGCTTCGGGAAGGTGTACGGCGGCGG 35161 28 92.9 33 ......G..........T.......... CGGCGGACGCGTCCAGCCCGTCATCACGATCTC 35222 28 85.7 141 ...T.........GT......A...... CTCGCTCCGGCGTCGTCCGGCTCGCCCCACATCTGCTCCCGAGCACGCGGGGTGTCCACGTCGGAGACGCAGTTGGCGATGCGGGCTCGCTGCTCCCGCACGGGAGTGATCGTCGTCCGACTCCGCTTCTTCTCAGGTGGA 35391 28 89.3 0 ...T.....A.....A............ | T [35416] ========== ====== ====== ====== ============================ ============================================================================================================================================= ================== 33 28 97.7 36 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : CCAGCGAAAACAGTGAGCGTGCCGTCGCTCACTCCGCGGCGCGAACCCGACTCCTCTCTACGGTGGCAGACCTCGTAGCGCTCTGCTCGGCTTGCCGGGTAGATGACCGCCTGGACGACTCCTCTACGACGCTCATCGAAACGGCGGCCGCGCCTGCCCGACCTGAGCTCGGAGCGCCTCCACCGACGGCTCCGTAACCGCCGCCCACGCAGAACCTCGACGTGCTGGCGTGGAGCGATTCCATCCCTCACCTCGCGTTTCTGGGCCCACTGACTTCGCCTAGTCGGTCGCGAGCGCGTGACCTCACCTCTGCTCAGCCGGTAAGTAGCAGTGTTCGCTGGTCGTTCCACTGAGCCTCACCAACTACGCTGTAGCCGAACTGGCTTTGCCCTCCACATACCTCCTTACACCGACCGGAACCGAGACCGAGTGGGATGATCTTGCGGAACCTAGTGAACAAAAACCGCGAAGTCGATCTCTAACGCCGCAGGTCAAGAAGT # Right flank : CGCGCGCCGGCCGACGCATTGGACTGGACAAACTCGAAGCGTGGCTTACAAACCGTCATCCCCATCGCCAGCCACGACGTGCGGAGGCCGTAGCAACGAAGAACCCGACTCGTGGCCGTGCTGGCACTCGTATACGGCTGAACGTCGTGCAACGACCATCGATCGGATCATGACCGCCGACCCCAGCAGTACCTAGGGTGGTGAAGTGTTAACCCTCGGCGTTGACCTTGCAGCCGCAGACGAACGTACGGCGGCTGCGGTGATCGAGTGGCTACCGGGCCGGGCAGTGGTACGGGAGATAGCTCTCCATGTCAGTGACGCCCGGATCGTCGAAGCGAGTCGGCACGCGGACAAAACCGGGTTGGACTGTCCGCTCGGCTGGCCGGAGCCGTTCGTCGCACTCGTCACGACCCACCAGGTCGGCCATGTGATGGTCCCTGACGGCGACGGCGGCCCTTGGCGGCGTCACTTGGCCTATCGCCAGACTGACGAGGTGGTAC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.38, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], //