Array 1 204805-204180 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNAJ01000015.1 Myxococcus virescens strain DSM 2260, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 204804 36 100.0 38 .................................... GAGAATTCATGCCGGGGGTTCGCCTTGCGCAGCGTCAG 204730 35 97.2 34 ...................-................ ACGCCGTTGGTGCGCGTGACGCCGCCCAAGACGG 204661 36 100.0 36 .................................... GAGAAGCAGTCCACCCAGGACTTCAATCTCGGCTTC 204589 36 100.0 40 .................................... GAAGGTGGGGCGTCCTCTCGCACCAGGTGCCCCGCGTGGG 204513 36 97.2 39 .....A.............................. GTGAGCACCCCTGTCGGGCAGATGGCCTTCGCGGAGCAA 204438 36 100.0 39 .................................... TTGTGGAATCGGCGCTCTTGAAAGGATAGCGCAGGTAGT 204363 36 100.0 40 .................................... TCCGCGACGGTGTTTTTCCCGCTGTCGCGACGCCCCAGTG 204287 36 94.4 36 ......T................T............ TGCTCAAGCATGAACCACTCATTGAGGGAGAGCTTG 204215 36 88.9 0 ........T..............C........CT.. | ========== ====== ====== ====== ==================================== ======================================== ================== 9 36 97.5 38 GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : GCTGACTGTCCTGTTGTCCAGGCGGACCCAGAAGAGCCGTTCAAGAACGAGGACCATATCGTTCCCCTGTATGGTTCCTTGAAGGACATGCTCTTCCTGATGGCCTTCAGCAGGAAGCGGATGGCCCTTCTGGAGCATCGGCGACGGTTCCTCCCTTCACTCGTGAGCAGCGGAACGGGGAATGTCCGAATCGTGGCTCCCTCCTTGGTGGGAGCCATCGACGAGACGCTTCTCCAGCTCGGCTTCCAGAAGCTGCCCTATACCAGCCCACTGACTCCGCTCTACGAGCGCGGTGATGCAGCCTTCTACGTCGACCGTTCTTCACAGGGAGGGGGACTGTCCGCCGAGTTGGCGGCACGAGATGAGCGTGAATTCGGGAGGCTGGTCGAAGTCATCCAGGATTCTACGACTCTTGTATAGTATTACCCGGTCAGGTGCACCAAGCGCGGTCGCCCCGTGTTGACGGATACGGGCGCCATTGCCATCCCAGAGGACGGCAA # Right flank : CCTGTCAGAAGATCTTCATTGTGGCCTGGGCCAGCCATGAACGCAGCGCCTCGCCTTCAACCCGGACGGGAGCGTTCTCGTGACCCAGATCAATCCAGGAGGCCTGGGTCGCCTGTAATCCGGAGGCGCCGCGGAGATCTGCCCCAGAAAGCCTCGCTCCATGAAGGACCGCGCCTTCCAGATGAGCATCTCGGAGATTCGCGGACGCGAGGTTGGCACTGACCAGGTAGGCGCCTTGAAGGTCCGCGCCTTGAAGGTCCGCGTCTTGAAGGTCTGCTTCGCTGAAGCTGGCTCGGAGCGCGTTCACCTGCGTCAGAATGGCCCCTCGAAGGAGCGCATAGTCCAGGTTGGCCTTTGACAGCTGCGCCCTGGAGAGGCTGGCGCCGATGAAAGATGCGGACGCAAGGTTGGCGTGGGCAAGCTTCGTCCTGTCCAGGATGCATCCATCCAAGCGCGCCCCAGGAAGCGCTGCCTCCGATAGATCTCTCGACGACAGGTTG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 211252-210503 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNAJ01000015.1 Myxococcus virescens strain DSM 2260, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 211251 36 97.2 36 ......................A............. AATCACTTCTGGGGTGGGAGCCCTCGAACCCCCCTG 211179 36 97.2 34 ......................A............. GCAGCACCGAGGGGGATGATCTCTTGCTTGATAC 211109 36 94.4 36 ...............G......A............. GCAACTGGCGCGGACTGGCGTAGAAGGAGCCCAGGA 211037 36 100.0 36 .................................... GCATTGGCGTAGTTGATAATGAGGGGCACGGTAACG 210965 36 100.0 33 .................................... CTGTTCGTGATGGTGGCGGAACGCGGATTCAGC 210896 36 100.0 36 .................................... TCCAGCTCCACCTTGCGCATCTGGGACGGGCCCGGG 210824 36 100.0 33 .................................... CTGTTCGTGATGGTGGCGGAACGCGGATTCAGC 210755 36 100.0 36 .................................... TCCAGCTCCACCTTGCGCATCTGGGACGGGCCCGGG 210683 36 100.0 36 .................................... CCGCAGCTCCCGCCGCATCCTTCGGGGCCGCAGGAT 210611 36 97.2 35 .........T.......................... CCGACAACGGGTTGACCGCCACGGGGCCCACGGGA 210540 36 88.9 0 .............................G.T..CT | CC [210509] ========== ====== ====== ====== ==================================== ==================================== ================== 11 36 97.7 35 GTCCCGCTCGCCGTGATGCCGAGAGGCGTTGAGCAC # Left flank : A # Right flank : CCTCCTCGGGCAAACCTCACGAGGTTCCATGGCCTCTTCGCTCCAGGCGATGAACTGCGGCCATTTCTGGTACCCCAAGCAGGTGTGGAGGGGGCCAGCGCGGGCTGCGCGGCCTGTCCACCGGCCTGAAGCATCCCTCGGGCGGCTTTGTCAGCGCCTCTCCTCGGACCCTCTGCTTCCTCCCCTCCACGGGGCCCCTATCACTCTCATGGGGCATCGGGAGGCGGCCGTAGTCAGACAAGAGGGGCGTCATGAACGCCCCTTGCTAGCCCGCAGAGTCTTCAGCGGAAGCCAGGTGTCGTCCTTCATTCCTTATGTCTGGGTATGACGGCTCCCTACCTTCCTGCGAGTCAGCCATTGGAACTAGAATCACGGCAGCAGTCCAAGGGGGGAATATGGTGCTGGTGGACGTATGGGAAGAGCATCTTGACGAAGCCTCCTTTCACTGGGAGCAGTGGGAGCGAGCCCTGGTGGCTCCCGACTTCACGCTGACGGAGACT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAGAGGCGTTGAGCAC # Alternate repeat : GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 1303351-1303811 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNAJ01000001.1 Myxococcus virescens strain DSM 2260, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1303351 37 97.3 33 ......................C.............. CGTCGCCAGGAACGTGCGGATGTACTCCACGAG 1303421 37 91.9 33 .....A................C........C..... GACATTCGCTGAGAGCACGTGGAGACGCTGCCC 1303491 37 94.6 34 ...................A..C.............. TGTGGCTTCAGTCGCTCGCAGGTCGCTGCGGGCA 1303562 37 94.6 34 ......................G............T. ACCGTCCAACCCCTTTCGCCGGCGGTCTCAATGC 1303633 37 100.0 34 ..................................... CCGAGTTCGCCAGCGGCCCGGTACAGCTCCGCGT 1303704 37 100.0 35 ..................................... GCAGCCTCGTGAGCGCGCGCTTCGCGCCATAGGCG 1303776 36 91.9 0 A...A.............-.................. | ========== ====== ====== ====== ===================================== =================================== ================== 7 37 95.8 34 GTCGCTCCCCGTGAACGCGGGGAGCGTGGGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CACGGACGCCCTCGTGGCCTCGACAGGGCCGGTTGCCGCCTCGCGGGTGGCCTGCTCGACGTGTCCGTGTCACGCGCCCCAAGGCGACACGGAGGGCTCGGTGTCCGTGGCCCTCTGTCGCTACGGCTCGTCCGCCATGTCTTCGAGCTGACCTTCCGCTATCTCGCGGTAGAGCGGTACGACTTCGACAGCGAGCACATCCCGCATTTCCTGGCGGGCGCTGTCGAAGTCACCGGCCGCCTTGTGTTGATACATACGGTTCAGCGCATCGGAGATTCTCGCGGAGCCGTCGCGGATGCGGCGCGCAATCTCGCGGAGCAGGTCCAACGCCCCGTCCTCCGTGGACAAAGCGCGAGAGGCAACCGCATCGCTGATTGCCACATCACGTGCCGAGCGAGCAAGGAGCGCACACACTTCGTCCGTCAAGGCAAGTGGCGCCCCCTCGCGAAGGACGCGCCGCGCGAGTGCTCGAATGGGGCCCCAGTCAAGTGTTTCGGGCA # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGAACGCGGGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1446-1840 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNAJ01000025.1 Myxococcus virescens strain DSM 2260, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1446 36 100.0 38 .................................... GACCACGCTGAGATGGCCGAGATGATGGAGGGTTGGTA 1520 36 100.0 37 .................................... AGTACGAGGTCGAGCGCATCGAAGGCTTCCCGATTCA 1593 36 100.0 34 .................................... TGGTGGTGCCCGTGACGGGTATCCGCAAGGTCTT 1663 36 100.0 34 .................................... GCAACAGCACCCAGGCGCAGCTACTCGTGGATGC 1733 36 100.0 36 .................................... GGAGCCATCGTGAAGGCTTGGGACCGCTCGCTGAAG 1805 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 100.0 36 GTGCTCAACGCCTTCCGGCATCACGGCGAGCGGGAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCGGCATCACGGCGAGCGGGACGTCGCCTCACCTTCAAGGGGAACAACGACCTGGG # Right flank : CAGCCCGCCTGAATCTCCCAGCAGTTCCGCCAACTTACCACCTCCCTTTTCAAGCACCTCCCCTTCTTTCGCCAGGGTTGTGCCTCCCGGACCCTACCCAGAAATCCGAACCCCATGGAATCACTCAGCTTTTCATCGTTCATGCACCTATTCACCTGTCAAAGAGCCTCAACCCCACGAAACAACAGGGGAAATCGTCCATTTCGAGGGCGCGGGCCTCCGCCACGGCGAGGTGCTTGAATGTCATTCATCATACAACGCCCCCCGCGCGCGGTGGAGCAGCTCCCTCAGCGTCTCTCCACGTCCGTCCCCATCCGAGCGAGCAGCGCGTCCCTTCGCGCCTCGAGTTTGGGGCTCTTGACGAGCGACCGCAGCGCCCTGGCCCCAGTGTCACGCGCTTCGGGGGACAGGGAGACCAGCCGCGACAGCCACTCCGTCTCGAAAACAGTCAACACCTGCTTCTGCTCCAGTTTGTCCGCGCGCCGGGCCTCCACCCACGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCAACGCCTTCCGGCATCACGGCGAGCGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 2473-2796 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNAJ01000034.1 Myxococcus virescens strain DSM 2260, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================== ================== 2473 33 97.0 42 ..T.............................. CACCGTCCTTCCACGGACGCCGACAAGGCGCGGTGGCCCGAG 2548 33 100.0 42 ................................. CACAGCTTGAGTGTGTTGATGACAGGCCCGCCATTGGCGGGC 2623 33 100.0 37 ................................. CACTCCGCGTTGCTCCCCTGCAACACACCGTCGCTGA 2693 33 93.9 38 ..........T................A..... TACAGGCCCTCGCAGCCCTGCTTGAGGAAGCGCTCGAA 2764 33 90.9 0 .....................A.G...A..... | ========== ====== ====== ====== ================================= ========================================== ================== 5 33 96.4 40 GTCCCGCTCGCCGTGATGCCGGAAGGCGTTGAG # Left flank : GGCTTCTCGCGCTTGCCCAATCAACGCGAAGAAATAATTCGAAACATCGTGGGGAGCTTCGTAGCTGCGTGTGCATCAAAGCGTTTCTGCGAAAGGCTGACCATTGTCATATCGCCGAGCGATTACCGAACTTTCGGCATCGATCTTCAGAAACTCGGGCGCTTCGTGGAACACATCTGCATGTACACGCCGTTTAGCTCGCCTCAATCCGTCGGTGCTGGCCAGCCCGTTCCCGCTACGCGACAGGTGGCTTAGTTCGCGTGTCGTAGTGGGCCGACGTGGTGCTCACCGTCGCGCTCCGGCAGTTTCGGCCAGAGAAGAGTGCCCTAGCAGTTCCGGCCCGAGGGGGAGCGCGCTCCGCGGGTGTGGCTCTCATCCTGAGCGCGCTTCGAGAGGAGCCTGCCGCCTGCTTGGTAACCAGCCTTGGCGTAAAGGGTTGAAGTCACGAGGAGATTCCTGGTTGCTCAGGATGAGAGCCGCACCCTGCTCCGCAAGCTTCC # Right flank : GTGTTGCCGCGCACGTTGGATGATGAGCTGGAGAGTCGCCTGATTAATGGCATCGGGACTACGTTTCCCCATTCGTGTCACGGCCTTCGCCGCCTCCGGTGTCCTGTGGGCAGCTCTAACTCGGTCGGAGAGCCGCAGAATGGCAGCAATCAGTTCCGCATCTCGCGGAAACTGCTGTCGCGCCAATGAACTGGGTCCCATCACGAGCGTGAACCCGGATGGTCCGGCTCCGTGATGGCATTCTCGAAGCCTCCAATTGAGAGCTTAGCAGCCAAGGCGCTCGAAACAGGGCGTCCATCCATCAACAAGCGTGCTCAGCACTAGGTGAGGCCGGGCCGGCGTGGGCCAGATTGATTGGATTTCAAGTTCCTTCTGATGTTCATGGTATAGCCTGCTGTGTGACGGAAATCTTTCCTGGGGGACTTCCTCTTGCTTCGATGGATGGCGCCGCTGCTCTTGGTCGCTGTCGTCACTGGCTGTGCGACCACTCGAGTCGTGCG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGGAAGGCGTTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 23530-24071 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNAJ01000034.1 Myxococcus virescens strain DSM 2260, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 23530 36 100.0 35 .................................... ACGAGCCCAACGTTGACCATGGTGTTCAGGTTGAT 23601 36 100.0 39 .................................... TCGCTATCCAGGTGCGCCATTTCCTCCGCGAGTTCGGCA 23676 36 100.0 34 .................................... GCCGTGCGGAAGTCGCAGCGGGACTTCGCGGTGT 23746 36 100.0 36 .................................... CGCCGGACGGTGACGGTGGCTTGTGCGACGGGGGTG 23818 36 94.4 39 ..........T....................G.... AGCCAGAAGTCGTTGGCGTTCTGGAGCTTCACCGGCTTG 23893 36 100.0 37 .................................... TTGACCACCACGTCGAGGCGTAGGTGGACCCAGGTGT 23966 36 100.0 34 .................................... CACACCCTGCGGCGCACGAAGGAAGATGTATGGG 24036 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 8 36 99.3 36 GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : CGACCCGCGGCGGTGGCGGAAGGTTCATGCCCTGCTGAAGGGGTATGGGGAGTGGTTGCAGCTCTCCGTATTCCGTTGCTCGCTGACGGACCGGGACCGGGAGAAGCTGCGCTGGGAGCTGTCGCGGCGGATGGACGCCGTGGATACGTTGCTGGTGATTGGGCTGTGCGGCGGGTGCGTGGAGCGCGTGCGCGCCATCAACGCGAAGGAGGACTGGCCGGAGGAGCCCGCACCGTTCAAGGTGCTGTGAAGCAGGCGACAATCAAGCACCTCGCCGTGGCGGAGGCCCGCGATGGCGAAAGTGGCGGATTCCCCTGTCGTTTCATGGGGTTGAGGCTCTTTGACAGGTGAATAGGTGCATGATCGATGAAAAGCCGTGTGGTTTCATGGGGTTGGCGATTCTGGGTAGGGTCTGGGATGGCCAACCTGGGGGACGGAGGGGGAGGTGCTTGAAAAGGGGTTTGTAAGGTGCCGGAATTGCTGGGAGATTCAGGCGGACT # Right flank : T # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //