Array 1 56500-57262 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABEML010000006.1 Campylobacter jejuni subsp. jejuni strain P4543 Campy5-4543-1-041820_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 56500 36 97.2 30 A................................... TTATTAAATGTTAGATTATAATTCTTGGCA 56566 36 100.0 30 .................................... GACTACACCTGTAACGGTTAAAATTTCCAT 56632 36 100.0 30 .................................... AATCCTAATAATTTAACAGCAGGCATTCTA 56698 36 100.0 30 .................................... GACTACACCTGTAACGGTTAAAATTTCCAT 56764 36 100.0 30 .................................... AATCCTAATAATTTAACAGCAGGCATTCTA 56830 36 100.0 31 .................................... TTGCTTAACATTATAAACGTGGTCTCTTATT 56897 36 100.0 30 .................................... TGGAGCTACTTCTGTGGATATAAGTATAGA 56963 36 100.0 30 .................................... ACTGCTATAAGAGGAGCTACTGGTCAAGAA 57029 36 100.0 30 .................................... TATTATGATGAGAGATTAAAGAAGTTTATC 57095 36 100.0 30 .................................... TATTATGATGAGAGATTAAAGAAGTTTATC 57161 36 100.0 30 .................................... ATGATGAAAGTTCTAATTATGTTAAAGTTT 57227 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 12 36 99.8 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : ATAAAACCAGGCAGACATATCAAAATAGCCAAGGCTAATGAAAAATTCATCATTGCCTTACCAGGTTTTCCTTACTCGGCTATGGTAATGTTTAATCTTTACGCAAGAGAGATTTTAAACTCTTGGTTACTTCAGCCTAAAGACTATATTTGCAAAGCCTTTTTACAAGGAAGTTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGCAACATAAAGTTTGAAAATGGACGCATTTTAGCCAATCTTGAAGGCAAAAAAGAAGGCTCTAGTGCGATTATAAACAATCTTAACAATAAAGCTGCCCTTATGGTGGTGCCAAAAGAATGTGAAATTTTAGAAAATGAAAGTTTAGTGGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTCGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCGGAGTTTCAATCCACTAGGGTTT # Right flank : TAGATATTTACCAGATAATGAAAATTTAGGGGTTTTTTGATGAAAAATAGCAAAAATTATGCTATAATCTCATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTAGTTGTATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGTGTTAAATTGGTTTCGTTATTAACTTTTTCATTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAATTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGCAGCATAAAATAACCTAATTTTATAAGATTGTTTCTAAATTTACTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //