Array 1 19083-18635 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUWV01000027.1 Photorhabdus luminescens strain H4 NODE_27_LENGTH_72599_COV_14.7008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19082 28 100.0 32 ............................ TTAATGAGCTCGGCAGAGGCATTCCTGTTGAT 19022 28 100.0 32 ............................ TCACCCGAATATGATGAAAGAGGATTACGTAA 18962 28 100.0 32 ............................ ATCAATGGACGTAGGCGTTAAAGAGGTTCGCA 18902 28 100.0 32 ............................ AGAGCCTGAACAACATAACTGAGGTCAATTAC 18842 28 100.0 32 ............................ AGAGCCTGAACAACATAACTGAGGTCAATTAC 18782 28 100.0 32 ............................ TGAATGACACCGGCCAACCTATTGGTTGCCCC 18722 28 100.0 32 ............................ AATGAATCTATAACGGCGTAATAGCGGAATCC 18662 28 92.9 0 .........T..............T... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGATGATGTACGAAGCTTTACAACCTGCTATTCGTTATATGCAACGTCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCGGATAATCATCGTAGTGGGAAATTGTTGGAACGATTGGGTTTTGAACGTGAAGGTTATGCCAAGAAATACCTGATGATTAATGGAGTTTGGCAAGATCACGTATTAACCGCATTGACAGATGACAAATGGAGTGGAAAAAGTTGATTATTAAGCTGTACTGTCACCAAATAAAGTAAATTAAATTAGTAATGATGAATTAAACCATCGTTGAAAATCTGCCTTCCTCACACCTTATTTTGACCCTTTTTTAAGGACTGATTTTAATTTATTGATTTTTAATGGAATATTATTTCTCTTGTAAAAAAGGGTTTTTTCGTTGTTTTATTAAAATATGCTTTAATCGTCAGTAGGTTGAAGTTAATATGTAACA # Right flank : AGTTAATGAGTTCTAGTGCATAAGCGTGGATTTATGTATACTCGCCGCTTTTGTTAGCAAAGTGAATGATTAACCATGAATAATATTGCTGCCTTGTCTTTGGCTGCTGTGATGTTTACTAGCGGTTGCGCTACGATTATGGGTGATAAAACTCAGCATGTTCAGGTTGATAGTAATCCATCAGGGGCCATGTTCTCTATCAAAGATGAATTAGGTAGGGTTGTTGCTCAAGGGAAAACGCCTCAAGATGTGATTTTAGAAAAGTCTGATGGAAGTTATTTTGGTAAAAAAGACTATCTGGTTACTTTTACTAGAGAAAATTCTGAGTCTGTAACGTTACCAATTAAGGCGAGCGCTAATGGTTGGTACATTGGCGGTAATTTGTTCTTTGGTAGTTTGATTGGTTGGCTCTTAATTGATCCATTTAATGGTGGGATGTATACGCTGCATCCAAAAGCAGTGAATGCCCTGTTGCCTCAGAAACCAGTGAGTGCTGAAGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 151568-152134 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUWV01000002.1 Photorhabdus luminescens strain H4 NODE_2_LENGTH_205925_COV_17.931, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 151568 28 100.0 32 ............................ GGCAATAGCGGCGGCGGCTCACAACAGACGCA 151628 28 100.0 32 ............................ GGAGTAAGGTTGCCTTCTGAGTTGAAAGTGAC 151688 28 100.0 32 ............................ ATATCAATAATATCCTGACGTTTTAGTTCCCG 151748 28 100.0 32 ............................ TGATTATTCAAATTGGGTTGATTTATTGGAAA 151808 28 100.0 32 ............................ AATATGTGGTGCCGCCTCATTGAGCTCCAGGC 151868 28 100.0 32 ............................ TGATACGCCGGGAAGTATTGTATGGAAGAAGA 151928 28 100.0 32 ............................ GCTGAGCGTAAAATTTTGGTCTGTAGTTCAGT 151988 28 100.0 32 ............................ ATTGAACGGAAACCGACAATTTGTTCAGCCGG 152048 28 100.0 32 ............................ ATCGATTTGTAGACTGGGTGTCTACTAAGTCG 152108 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAGAAGCTGGTCTGGAAGTTGTTATGGATCGCTGCCCGAAAATTGAAATTCCGAGATTGGGACTCGAAAAATAATATTTTTCAGTTTGTAGTTACTTTAGTTTCTAATCAATGGACGAAGGGAACCTGGCGCCAATATCTAATACAAACTTAAGGCGTTGGATGAGGAATGGTGCCCGGGTTCCAAGTGTTCAAATAATGTTTAAGTTGAATATTGAGTTTACTGTTCTAGACATCTTATAAAATCTATTTTTACAGTTATTACAATATTTTAAGGCAATTTTGGTTGTTCTTATGGTTGCTAAGTTTTGCCAGAATCTACACTTTTATTGCTATAAGATAGGTGTTTTTGCTGTACCTCAGTTTTAACCCTTTTTTATCATTAAAAAATAACCTATTGATTTAAAAGAAAAATTAAGTATCGCCTAAAAAAAGGGTTTTTTCATTTTTTATCATTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : ACACGATAACTGCCTTAGGTTGTTTAGGTATAAATGGGGGATTAGTTGCGCAGCCTTGGGGCCAGTAGCTGATTGCGGATAGATTCTGCTAGTTCATCTAGAGAAGGTTGCTCTGGATGTTCATCAGATGTTTCATAGGCTAATTGCGCTTCAGCCAAATAAGTATGTACAGGTTGACCGTTGTCATCTTCCATCACAACGTGATACCAGGGAGCGGAACGCAAGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGAGAGTATTCCACATCAATATCCACGATGACTCCTAAATAACCAAGAAGCTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGATCTTGCATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCATACCCGGTGGTTGAAGCCTTTTTTTGCTTTAATTGTGAGTGTGACTTCATCTATTTCAGGTTAGCTGTAGTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 187058-187984 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUWV01000002.1 Photorhabdus luminescens strain H4 NODE_2_LENGTH_205925_COV_17.931, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 187058 28 100.0 32 ............................ TGTAATAACTGATCCATACTGATAAGGTTAGA 187118 28 100.0 32 ............................ TCCGCACCTGGCTTACCATACACCAATCTATC 187178 28 100.0 32 ............................ TTCAGCACTCAAGAGGAATTTCGTTTGAATAT 187238 28 100.0 32 ............................ TGTGATTTGTGTATTGCCAAATATTACCGTCA 187298 28 100.0 32 ............................ TGGAAATATATGTCGCAACGATTCACCCAAGA 187358 28 100.0 31 ............................ TGCCAAACCTGCATGAGGCGGCGTACCAAAT 187417 28 100.0 32 ............................ ATGAATATCATCATTCGACGACCATCAATGAT 187477 28 100.0 32 ............................ TATTCCAATGCGCATATGATATCCTATCATAC 187537 28 100.0 32 ............................ AGCAAAGTCTGATGGAAGCGTTATTTGCTAAA 187597 28 100.0 32 ............................ GATCCCAGTGTCGCCACTGCCTCGGCAACGGT 187657 28 100.0 32 ............................ ATTTCAACCGCGCCGCCAGTAAACGAACCAGA 187717 28 100.0 32 ............................ TTCTGAACATTTTTCTTTTCTGGCTATCGCTG 187777 28 100.0 32 ............................ AAAGCAATGTTCCCAAAACTGGATGATGTCCA 187837 28 96.4 32 .............T.............. ATAAGCCCAAACGGGCAGGAGCTTAACATGAA 187897 28 100.0 32 ............................ GAACACAATTAAGCACACTTGATGGATTGGAA 187957 28 78.6 0 ...........T.........AGC.C.C | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAACCAACGTAGTTGGTTATCGACTAGGAAAGCAGTTTCTGAGAGATTTATTTCCATAGCAATAGATAATAGAGTTTCATCTGGAAGCCAATTATCTAATATAACAACAGCGGCTGGATTACCAGAGAATGGGCTATCGGTGAATGCATCGACATGATAAATGGGTAGCGAAGTCATTTGTATCTCTCTTAAAATAGAATTAGTCATGAAAAAGGGATCAATCTTCTTAATTTTTATAAAAAAATTGCCCGCTATTTTATACAACTATATGTGATCGTAAAAAGAGTAAGCAGCTCAGTTTTAGGATATTTAGCTGGTTTTCTGAAGCATTGGGTATCATTGCATTAACCAGATATGCAACCCTATTTTTACCCTTTTTTTGCAGTTAATTTTAACTTGTTGATTTTTATATAATATTATATTGTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : CTCGATTGAGTGCGCTAAAAAAGCAACCTATTTTCTGTTCGATATGCATCAATTGATATGTTTTTGTGCATATTCTTCACTGTTAACCCATTGGTGGTCTTTTTCCCAAGTAAATAGCCACTTGCGGGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGGTAGCCTTTGGGCACCATTACCACATCTTTATTGTAAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACACGTTGCATGCAGAACCCTTGAGATGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGTGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAGCTGGTACAGCCTTCACCGGTAAAGACTTCAACCACCAACAAGCTATTAGCAGGTTTATTATCCGGTAGGACGTTGTGAACATAGCGTCGGTTGTAGCCATTGCCACGTTGTTCTGCATCAATAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //