Array 1 364-1307 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWF010000079.1 Dolichospermum flos-aquae LEGE 04289 NODE_120_length_18768_cov_7.42165, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 364 36 100.0 42 .................................... ATGAAGCACCACGAATAGTTCTTTGTTACGTAGTCTCTTTTT 442 36 100.0 38 .................................... TTAATGCAGTCTCCTGTTTGATCGTCGCGGGCTGCTAG 516 36 100.0 31 .................................... CTGAACCGCCATCATTTATACACCACTTGAA 583 36 100.0 41 .................................... TTTCCAAAGTGTCGGGAATCTCATCAAAGCAGCTATCTTCA 660 36 100.0 45 .................................... GTTTCTACTATCAGGAAGCAGTTGACAGAAGACCGAACAGTTAAA 741 36 100.0 35 .................................... GCAGTCAATAACTCAGTTGCCACTTCTTGTAATGT 812 36 100.0 43 .................................... TAGATTTGCATCTAGCAATACAAGCTGGTCGCAACGTGAACAA 891 36 100.0 49 .................................... TATCTCGTTGTAAACGTTGCGTATAAACTCAATTTGGTAATCCCTTAAA 976 36 100.0 40 .................................... TGATAATTCTTGCAATTCTAAGATTAGCTTATGCTTCTGA 1052 36 100.0 35 .................................... TTCCAATTATCAAAATTTTCAGCTTGTATTTGCGC 1123 36 100.0 37 .................................... TTTGTTACTGGTAACTGTTTATTAACTTGCATTGTAT 1196 36 100.0 40 .................................... ATAATAATCCTAAAATTTGATTAAGAGAATATCCTAAAAA 1272 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== ================================================= ================== 13 36 99.8 40 GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Left flank : ATGCTTTGAAAGGGGTATCTAGTCGTAGGTATGGGCAAGCTGGCTATAAAAAACCTCATAGAGAAGCGTTATGGAGTCCCAGTTATTTTGCCATTTCTGTAGGAGGTGCGCCACTAGAGATATTAAATGAGTATATTAAAAATCAAGAAAAGCCGTCCTAGAAGGACGGGGCTTGTATCCCATTATTTTCGGTCAGGTAAAATGGCTGTAATGTTGATTTTTTCGTTGGGAACTTCGGTCGCTTGCTGGGTAAGGGTTTTGGGGGTTTTTTCCTGCTGTCGGTTGGTGGTTTTACCACTTTTTTTCCTGACCTTTGGAAACTGTCTCTGGACACCTTGCTGGGTAAGGGTTTAAAATTGAGGAG # Right flank : GAAAAGTATATAGATAGACTATAATAATGTGGCACTATTAAAGGACAACCATGAGTTACGACGCTATAGTACAAGCCCGTTACAACGCAACTGAGAAAGGAAAATCTCGTAAGCGGAAATGGGCGGCGAATATGTCAGAGGAACAAAGGGAGAAGCAGCGGCTCGCTAAAAAAGAATATCAAAAGAAAAGACGGGAGAAATTAAAATTAAGTAAGTCTAAGCAAACGGATTGTTAATTCTACCCCCAACAAATGTACTACGCGGTGCTGTGTTCCCTAATTCAGTCCCCACTCGTTGGGGACATTAATTGAATGGAAACTGGTATAGAACCAGTTGCAGTTCCCCACAGCTCAAACCCGTCTTTTGTCCCCACTCGCTGGGGACATTAATTGAATGGAAACCCCAATAAGGTGGTAAGTGCTTCTGGGTTTTTCCAGTCCCCACTCGCTGGGGACATTAATTGAATGGAAACTTTTCCATGTCTGGATTTTCCATAGCTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 1590-4200 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWF010000079.1 Dolichospermum flos-aquae LEGE 04289 NODE_120_length_18768_cov_7.42165, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 1590 36 97.2 46 ...........T........................ TGGTATAGAACCAGTTGCAGTTCCCCACAGCTCAAACCCGTCTTTT 1672 36 100.0 35 .................................... CCCAATAAGGTGGTAAGTGCTTCTGGGTTTTTCCA 1743 36 100.0 37 .................................... TTTTCCATGTCTGGATTTTCCATAGCTGGATTTTCCA 1816 36 100.0 38 .................................... TTCTTAGGGTAGGATTCCCTAAAAGATGGTATAAAATA 1890 36 97.2 41 .........T.......................... GACGCAAGCCTAGAATTTGCTAATTCAATGCCTATCATTTT 1967 36 100.0 43 .................................... ATTGTTCTAGTTTTTGCCAAATGTCATTCGCGGATACATAGGA 2046 36 100.0 43 .................................... CCTCGGTAAAAAGGTGGCTTCTTAGCTGTACAAACAGAGTAGC 2125 36 100.0 35 .................................... TTCTTTGCTAAAATAATTGTTTATGGCTTCAAATT 2196 36 100.0 41 .................................... AAACTATTATCTAACTCATTAGTACCCTCACTCGGTTTACT 2273 36 100.0 39 .................................... GCCTGGATTATGGCAAATAAAGCCTTAGAGCGATCGCAC 2348 36 100.0 46 .................................... GGAACTTTGCGAGCGTGTTTTTAAGCTTGCTTTTAAAATCAGATGA 2430 36 100.0 35 .................................... TGCCAATAGTCCTCAGCGCTACCGTGCTGTGGATC 2501 36 100.0 45 .................................... CACAGCTTAGGACTATTTTGTACAGAATACAAGAAGCCACCGTTT 2582 36 100.0 41 .................................... CAAAATGCCGATGAAATTTGGGTATGCACTTCACCAGTGAT 2659 36 100.0 37 .................................... TAGGTACTATAAGCTGTAAACCACTAAGACCTTAACG 2732 36 100.0 41 .................................... TTCTTGAAAAAGCGATCGCAGCAATCTTACCCTTTAAACTT 2809 36 100.0 42 .................................... CCTATCCGTAAATCAGACAAGTCAATGATATTGTTGACAACT 2887 36 100.0 37 .................................... ACTTTAATAAATGCGTTTTTGATTTGTTCCTCTGAAT 2960 36 100.0 44 .................................... ATGACTACATTGAGGACTTCACTGAACTAAATGCCCTTAGTTCC 3040 36 100.0 39 .................................... ATTGATCGCTTTATAGCAGATTGTTTTAGTAGCCATTTG 3115 36 100.0 41 .................................... CTGATAGTGGAAACGGTTCTGTCAAAATAAGTATCCAATAT 3192 36 100.0 39 .................................... TTCTGTGATAAGAGTAAGCTTCTAGCTAAAGCCCATGCT 3267 36 100.0 36 .................................... AAGGTGCAAGCTTTGGCAAGTAAAGCTCCTCCCAGC 3339 36 100.0 35 .................................... TTATAGTGCCGTCGAGGTCACAAAATAAAATCCTA 3410 36 100.0 40 .................................... ATATTTGTATAATGGTAATGAAAGATTTAACCCTAGTAAT 3486 36 100.0 35 .................................... CACATAATAGCGTTTAGTATTCCCATGTGGGTAAA 3557 36 100.0 37 .................................... TCAAACTGACCAGCAGCCCACCGTTCTGCAGCCATAT 3630 36 100.0 41 .................................... ATCTAATCCTTGGGATATCTCCCAAGCTCTCCAAATCGTTC 3707 36 100.0 35 .................................... ACTTGCTTTTTTGACTCCCCTAAAGATTCTCGCAA 3778 36 100.0 38 .................................... GGATTGAGGCCATGGCATCTCTGCCATCTAATGTTTTT 3852 36 100.0 39 .................................... TTTAGCTGCTAATTCCGTTTTCATGGATGCAAATTTTGA 3927 36 100.0 37 .................................... ACATTGAAGCGATCGCTAGATTTGGGGACATTATGCA 4000 36 100.0 46 .................................... TTGTTAAAGTGTTCGTAAATTTTCTGAGGGTGAAACCAACTTGGTA 4082 36 100.0 47 .................................... CTGATCATCAAACCCACGTAGGGGCGAACGGCCGTTCGCCCCTACAT 4165 36 91.7 0 A........G........T................. | ========== ====== ====== ====== ==================================== =============================================== ================== 35 36 99.6 40 GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Left flank : CCAATTATCAAAATTTTCAGCTTGTATTTGCGCGTCCCCACTCGCTGGGGACATTAATTGAATGGAAACTTTGTTACTGGTAACTGTTTATTAACTTGCATTGTATGTCCCCACTCGCTGGGGACATTAATTGAATGGAAACATAATAATCCTAAAATTTGATTAAGAGAATATCCTAAAAAGTCCCCACTCGCTGGGGACATTAATTGAATGGAAAGAAAAGTATATAGATAGACTATAATAATGTGGCACTATTAAAGGACAACCATGAGTTACGACGCTATAGTACAAGCCCGTTACAACGCAACTGAGAAAGGAAAATCTCGTAAGCGGAAATGGGCGGCGAATATGTCAGAGGAACAAAGGGAGAAGCAGCGGCTCGCTAAAAAAGAATATCAAAAGAAAAGACGGGAGAAATTAAAATTAAGTAAGTCTAAGCAAACGGATTGTTAATTCTACCCCCAACAAATGTACTACGCGGTGCTGTGTTCCCTAATTCA # Right flank : CCAGCTAGTAATAATACATAAGGTGTGAGGTAATTAACTGTGTAAAGAAACGTAAAATCGCTGAGAACTTCTTTACTCTTGCCTCTTGCCTTGCTATAACGACAATTTTCAACGCCAACCTACTTACTCATATTTATTAACAATGAAAGAAAGAATAACTACGCTTTTGTTTTTGATGGTCATATTTTCTATTTTTTTTAGAGCTTGTGGTGGTACTACTACCAGTACCAGCAGTACAGAACAAGAAAAAACAGAATGTGAAGAATTTGCGGAACGGGTTACAAAGAATAGCGGTGGCAGTAAATATTCTTTAATCAAATCTTGTGAAAAAGAAAAAGAGCGTAGTCAATGGGAAAATGACTATGAAGGATCATTGCAAAAATTAAAAGAGAAAAACCGTTAGCCGGAGGACACCAGCTAAATGGGGTAAGAGGTATAAAGGTTTTGTAAATAAAGACTCTAATCTTTTACCCGACAAGGATTGTAAAAACTACTTTTAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 4744-4912 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWF010000079.1 Dolichospermum flos-aquae LEGE 04289 NODE_120_length_18768_cov_7.42165, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =================================================== ================== 4744 24 100.0 51 ........................ GTCATGATATTGAATGCTTATCCCATAAAATTGTTCATCTTTCCCACTGGC 4819 24 100.0 46 ........................ CTGATGATCAAACCCACGTAAGGGCGAACGGCCGTTCGCCCCTACA 4889 24 95.8 0 ......T................. | ========== ====== ====== ====== ======================== =================================================== ================== 3 24 98.6 49 TGGGGACATTAATTGAATGGAAAC # Left flank : AAGAAACGTAAAATCGCTGAGAACTTCTTTACTCTTGCCTCTTGCCTTGCTATAACGACAATTTTCAACGCCAACCTACTTACTCATATTTATTAACAATGAAAGAAAGAATAACTACGCTTTTGTTTTTGATGGTCATATTTTCTATTTTTTTTAGAGCTTGTGGTGGTACTACTACCAGTACCAGCAGTACAGAACAAGAAAAAACAGAATGTGAAGAATTTGCGGAACGGGTTACAAAGAATAGCGGTGGCAGTAAATATTCTTTAATCAAATCTTGTGAAAAAGAAAAAGAGCGTAGTCAATGGGAAAATGACTATGAAGGATCATTGCAAAAATTAAAAGAGAAAAACCGTTAGCCGGAGGACACCAGCTAAATGGGGTAAGAGGTATAAAGGTTTTGTAAATAAAGACTCTAATCTTTTACCCGACAAGGATTGTAAAAACTACTTTTAGCGATCGCTCTTAATCACACAATTAATTATTGAGTCCCCACTGGC # Right flank : CAACGCCCATCAACAGTATATATAAATACATAATAAAATATGTACTGATATTTTGAGAATCAGTACATTTTAACTATCAATCAATGTTTGGTAAGGGAAACGCTGTAACTTGATAGCAGCATAAATAAGAACCAATGTCAAAGAAAATAAAATATTTTTAATAAAATCCTCAAAATCAGGAAAAGCGTACAGAGTAAGGGTTAGAGCAAATATTACAAAAATATTGAGATATTTTAGATTCCTAGACAAACACTGAATCGCGCTCTTATAATTCATCTATAAGCTAGACAGGGGATCTACCGATGACAGCAGAATATTGGCGGGCTAAGATTTGGGGGTTACTACATGACCCTGTATTAAAAGCGTTACATGACAATACAGGACGGGGTAAAAATAGCTTCTATAAACAACTAGAAGTAATGAAAGCTTGGGTTGAAATTGGCAAAACCCCCGATGATTCTCGTGGTAAAGCATTAGCAAATATCCTATTAGCAGATCAT # Questionable array : NO Score: 4.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.29, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGGGACATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 84634-83280 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWF010000007.1 Dolichospermum flos-aquae LEGE 04289 NODE_19_length_84633_cov_7.61467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 84633 33 89.2 36 ----................................. TCTAGGAAGTTGCCAGGTGAGTCTGTAACCCGGTGC 84564 37 100.0 36 ..................................... ATCATTGATGATAATTTCTGAACATCTATCAGCTAA 84491 37 100.0 36 ..................................... TCTACATCGGTGGTAATTACTGTTAAAGTAGTAGCA 84418 37 100.0 41 ..................................... AGTTTGTGCGATCGCTTGCTGAGTTTGCACAATCTCAGCAG 84340 37 100.0 35 ..................................... TGACTTGCGATTTCGTTCTCTTTTTTGTGCTTCGC 84268 37 100.0 37 ..................................... TCTCCAATTAGACCCCTCAGATTGGTAAACTCATCTA 84194 37 100.0 38 ..................................... AGGTGATCCGCAAGTGCGTAAGGCGGGGGGCGTGATTG 84119 37 100.0 41 ..................................... TGAAACTGTACAGACTCATAAGGAGTTAGCTGTAATTGCGG 84041 37 100.0 36 ..................................... TCTTGGTTTCCCGGCTTCCTTGGGCGTGGTGGTTGC 83968 37 100.0 34 ..................................... ACCCCTAAACTGAGGTAACGGATAACATCAGATT 83897 37 100.0 38 ..................................... GCCTGGTAATATCAGGTGTGATGTTATTACAATAGCAA 83822 37 100.0 38 ..................................... GTTTCCAATTAACCAAAGGGGTTTTAGAGAATTGATAA 83747 37 100.0 34 ..................................... AGAATAGGATATCTGAAGATGCGGTTTTATGGGG 83676 37 100.0 33 ..................................... TTGATTATTATTGTTGAGGATGTGCCTATGCAA 83606 37 97.3 36 ..........................C.......... ACTACTTGCGATCGCATATTCTGCATCTATTATCTT 83533 37 100.0 39 ..................................... CGGTAAATATTTCTGCTATGATGTTGGATGTTGCTATCC 83457 37 100.0 35 ..................................... ATTGGAACTATTGCAACGCCAAAAAATCATTCAAT 83385 37 91.9 32 G.........C.........T................ ATTGGAAATATTATTGGAAAGTCTATCCAGTG 83316 37 94.6 0 ..........C.....C.................... | ========== ====== ====== ====== ===================================== ========================================= ================== 19 37 98.6 36 ATTGCAATTTAACTTAATCCCTATTAGGGATTGAAAC # Left flank : | # Right flank : ATTATTAAACTGTCACCTGTTCCCTGTCACCTGTCACCTGTTCCCTGTCATCTGTTCCCTGTTCCCTGTCACCTAATTGCAATTTCACCTACTCCTTAAGATACTGGATTTTGTTCCTCAACCCAAATTACATAACTTATTTCGTCGGTAATTTTGGGTGTTCTTGGGAGTATTTACTGACTAGGTTAGATACTTCCGGGTTATACAGTCGCAGGTAATTCCAGTAATTACCGAATACTTGACGGACATAATTTTTAGTTTCATCAAAGGGAATTTCTTCCACAAATTCATCAGGATCTTTTTTGGGTATGGTTTGCAACCATTTAGCTACATTACCCGGACCTGCATTATAACTAGCGATCGCTAACATGGAATTATTGCTATACTGTCGATGAGTATAATCTAAGTACCAAGTCCCCAACATAATATTATCATTGGCATTTTCCAAATTGATTTTTTTGATATCTGCATTCATTTGTGGGGCTATCCACGCTGCTGTA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTAACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 73796-75943 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWF010000013.1 Dolichospermum flos-aquae LEGE 04289 NODE_29_length_75956_cov_7.69444, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 73796 37 100.0 34 ..................................... ACAAGAAATGGGTAACAGAATATGAGTACATTAT 73867 37 97.3 38 C.................................... TTTATTCTCCCAGTAGTCAGGGATATTTTTAAGTTCTC 73942 37 100.0 34 ..................................... AACATTCAGGATATATCGCCGTGCTGATGTTGCA 74013 37 97.3 35 G.................................... GTGACATACTCATGAGAGCATATTGATTCTTAATT 74085 37 100.0 35 ..................................... CTATCTTCTGCTCTATCTTCTGCTCTATCTTTAGA 74157 37 100.0 36 ..................................... TTTCCCCTATGTTGTGGGGATGCTTCAAGCCCGATC 74230 37 100.0 33 ..................................... GTAAACCCCACGTTTGCGCCACCGCAGCATCAA 74300 37 100.0 33 ..................................... AATAACCATTGCATTTTTTGGGATATGACAGCC 74370 37 100.0 43 ..................................... TGCTAAGGCGCGAAATTTAAAAATATCGCAGGTTAAAGAATTA 74450 37 100.0 36 ..................................... TCCTATTCATGAAGTGCTGGGGTGGCATAAAAGCAG 74523 37 100.0 37 ..................................... TGCTTATGCCACCTCAAAGGCACTTACCAACTACCAG 74597 37 100.0 33 ..................................... AGAGTGTGCAAAGAACGAAGCAGTAAGGGGTCT 74667 37 100.0 40 ..................................... TGATATATGACCCGATGTCCAAGACTCCCGTAGGATGCGA 74744 37 100.0 41 ..................................... CTTTTAGCCCGGTTGAGCATTCTAGCTTATTGCATATATAT 74822 37 100.0 34 ..................................... CTGAGTTAGCTTTTTAGCAGGGTCGCTAAGGAAA 74893 37 100.0 35 ..................................... AAATACTTAGATAAAAAAGGCACTGAAAAAACAGA 74965 37 100.0 38 ..................................... ATAGACTCTAATTTTCTCCAAAATAAATACAGCCAATG 75040 37 100.0 35 ..................................... AATTTTTTTATTTTTCAAACCAACCTCACCTCCTT 75112 37 100.0 37 ..................................... TTATTGCCGAAGCTTGACAAAAACCCTTATCATCTGC 75186 37 100.0 35 ..................................... CAAGTAGTCGCTAATGATGCTTTTATAAAATGCAC 75258 37 100.0 36 ..................................... TTAGGGGCGATCGCGGAAAATGACAAACTTCTAATA 75331 37 100.0 34 ..................................... CGGTGGCTGCCTCCCCTGGTTCTCGGCCGCCCGG 75402 37 100.0 33 ..................................... AGGGAATTGATAGCGGATTCAATAAAGGAGGGC 75472 37 100.0 35 ..................................... TAAAATAAAGAAACCCACAGCCGCCGCCGTGGGTT 75544 37 100.0 36 ..................................... TATATCCTAATAAGAAATAAGCTATAATAGGGGTAA 75617 37 100.0 34 ..................................... ATCAGGGGAGCGGGAAGACATATACAGCGTCAGC 75688 37 100.0 37 ..................................... GCATAATGAGCTTGCTGATCTCTATCAACCGGGCATG 75762 37 100.0 32 ..................................... TACATCTGTAGTCAGGTTGTCTACAGGTGCAA 75831 37 100.0 39 ..................................... CCGGGTCTGGGCTTGGCTTCTTTGCCTCCGGCTTTCCTT 75907 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 30 37 99.8 36 ATTGCAATTTAACTTAATCCCTATTAGGGATTGAAAC # Left flank : GAATGTTGTTATTTCTTACGATATTTCTGAGGATAAACGACGTACTAAAATCCATAGTATTCTCAAGTCCTATGGACAATGGGTGCAGTATAGTATTTTTGAATGTGAGTTAACTGATACTCAATATGCTAAATTGCGATCGCGTCTTAATAAACTCATTAAACCTGAAACCGACAGCATTCGCTTTTACTTCCTTTGTGCTTGCTGTTTTGGTAAAATAGAGAGAATTGGTGGTGAAGAACCCCGTGATCAGACAATTTTCTTTGCTTAATAATGCGCGGATGGGTGGGTGTAAAAAATTCAGATCAGAAAAAAATGCCTACAATCATTTCTACACAAGCTTTTCATCGAGTTCATGGAGTTCACCCATCCGCGCACCTTGCACAGCAAGAGTTTCAGCTATTTTACCCCTTGACACTTTTTTTGAAATAGATTATCATAAGAACATCCGCGCAACTGAACCTTGAAAACTACATATATATAGGCTTTCAGCATTCCGC # Right flank : TTTTAGGCCATAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTAACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA //