Array 1 154543-153913 **** Predicted by CRISPRDetect 2.4 *** >NZ_FILL01000002.1 Streptococcus suis strain SS975, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 154542 36 100.0 30 .................................... ACACCGTTTGTAAATAAGTGGTAGTCAAGG 154476 36 100.0 30 .................................... ATAATAAAACATCTCTAAACCTCACAAAGC 154410 36 100.0 30 .................................... CCATCTTCAAAAGTGGTAGTGACTTGGAAT 154344 36 100.0 30 .................................... GATGATTCACAATCCATGGACATTTGCCTA 154278 36 100.0 30 .................................... TAAGGGTAAGGCAGTAAGCCTTGCCTGTTA 154212 36 100.0 30 .................................... GAAGAGTGAACAAAGCGAAAATTAAACGCT 154146 36 100.0 30 .................................... TGGAGCTGATACAGTCTCTGCTTACAATAT 154080 36 100.0 30 .................................... GATATGCTTATGAAGATTTTGACTATATCA 154014 36 100.0 30 .................................... TAGAGCAGACTGAGCTACTTTCAACTGCTC 153948 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : TGCAACTCCAAACTTATTAAATTCAAACGTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAACTGCAGGCCATATCGCAGTGCGTCCATAAGGGTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAACACGGATACGATGCTAATGAACGCCTGGTTCGTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAACGTACGTAAGGAGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCT # Right flank : CGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACGTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGTTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGTCCCACCCCCTTTTCCATGCTATACTAAATATTATCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTAGGAACTGGTTCGACGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 155609-154847 **** Predicted by CRISPRDetect 2.4 *** >NZ_FILL01000002.1 Streptococcus suis strain SS975, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 155608 36 100.0 30 .................................... TTACCTGTTTTCTGTTCGACAATTTCAATG 155542 36 100.0 30 .................................... ATCCGAGTTCAATTCGACTCTGCTGATAGT 155476 36 100.0 30 .................................... AGCTGAGGTGTCTGTCAATCTCTTTCTTAA 155410 36 100.0 30 .................................... ATGACTGGTTGATACGTAACGGATATGTAT 155344 36 100.0 30 .................................... ACCACTGGTTGCAACAGCGGTCCTCCGACA 155278 36 100.0 30 .................................... ATGACTGGTTGATACGTAACGGATATGTAT 155212 36 100.0 30 .................................... GTCAAGACTTTCTTATGTGTTCATGATTAT 155146 36 100.0 30 .................................... CTAATCTAAGGCTATCCGACTGTCGCAGGC 155080 36 100.0 30 .................................... TTTGCAACTCCAAACTTATTAAATTCAAAC 155014 36 100.0 30 .................................... TGCAGGCCATATCGCAGTGCGTCCATAAGG 154948 36 100.0 30 .................................... ACGGATACGATGCTAATGAACGCCTGGTTC 154882 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : GTACGTAAGGAGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAACACACCGTTTGTAAATAAGTGGTAGTCAAGGGTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAACATAATAAAACATCTCTAAACCTCACAAAGCGTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAACCCATCTTCAAAAGTGGTAGTGACTTGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //