Array 1 10753-2753 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPT01000154.1 Methanosarcina mazei strain 3.H.M.1A.1 scaffold29_1_size38689-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 10752 37 100.0 36 ..................................... CAGTAGAAAACATACCTAATGCGATTCTTGCAATTA 10679 37 100.0 36 ..................................... TTGTAGGAGTGCTCATATATGTGGGAGCCGTAGTTT 10606 37 100.0 38 ..................................... AATGCTATGTATATATCCACAAAACGGGCACTTAACAA 10531 37 100.0 36 ..................................... ACATAGTTTTTATAGTGCTGAGAGCTTGCCAAAGCA 10458 37 100.0 37 ..................................... TGTATTCCGTATCTGCAGGGAGAAAGGATTCTTGTTT 10384 37 100.0 35 ..................................... TTATAATGAAACGTGTAATAACACAACCTCTCCGA 10312 37 100.0 38 ..................................... ATCCTACAGTCTCTTGCAGGGCACTAGGCGAAAAACTA 10237 37 100.0 35 ..................................... TTATGTTCGTTCTTTCTGTGACCGCACATATTAGG 10165 37 100.0 36 ..................................... AATACTTTATACTCTTTTATAGTCCTGCAGTGTATT 10092 37 100.0 36 ..................................... ACTCTAAACTCTTTGATTTTTCCGACTGCAAATAGT 10019 37 100.0 34 ..................................... TCATTATGTTTATGTAACAGTTATTGACAACTAT 9948 37 100.0 38 ..................................... CGGTTGTATTCTGCAATAAGCTCTTCAATGTTAGCTGG 9873 37 100.0 36 ..................................... TATTGTGTTTGAGCTGCCTTGAGCTGATTATACAAA 9800 37 100.0 37 ..................................... CTTGAACGGGTGTTCCCTAGGTTTCAGCTTCGCTAGT 9726 37 100.0 35 ..................................... CGAAACAAAACAAACGTATGCCTTTATCTAGTAAT 9654 37 100.0 38 ..................................... TTAAACATATATAGTATCCATGATGGACATACTATTAA 9579 37 100.0 34 ..................................... ATTCAACGTCCACATCAGGAGCTATGCGCTGATA 9508 37 100.0 36 ..................................... CAGACTGGAAACAAAAAGAAATAAGTTACGAGGTGT 9435 37 100.0 37 ..................................... TTAAGTAAGTAAACCTATAAATACCTAACTACGGTAA 9361 37 100.0 35 ..................................... GAAATTACGCACCTTATAGACACAAACTTTTCAAT 9289 37 100.0 36 ..................................... AATTCTCCTTGATAAATTGGCTGAATTTTGTGGTTG 9216 37 100.0 35 ..................................... TTTTTTCAGGGATTAATTGAACGTGCTGAGGAGGC 9144 37 100.0 37 ..................................... AGAAAGTTAGATCATGATTGTTATAGCGAATCATCGA 9070 37 100.0 34 ..................................... TCTGTAGAGAAATGGGCTGCAATAAACTTGTAAT 8999 37 100.0 35 ..................................... ACCTCAGAAGAAAGCCCATTCGGAGGCCTGAAAGG 8927 37 100.0 35 ..................................... TTTTCAGACACGTTAGCATAACATTCAGGAGTTGC 8855 37 100.0 36 ..................................... TCATGTTCTATAATTACAGGGACTCCATATCTAGGC 8782 37 100.0 37 ..................................... CTCATTGTATAACTTCCTTAATTTTCTTATAGAAAAT 8708 37 100.0 36 ..................................... AACATGACACCAATTTTAGGACAAACAGAAACCGAT 8635 37 100.0 37 ..................................... AGGTATTTCGATGGCTCTGTGTTCGGTTGCTGATGTC 8561 37 100.0 39 ..................................... ATCGATAGCACAAATGCAAGTTACGGGCTGAAAAAATTC 8485 37 100.0 36 ..................................... TCAGATCGGTTTGCCTGTCTGCGTTTCCATCGAAAT 8412 37 100.0 34 ..................................... TAAAAATGTAGTAAGGACTAGGGCAGAAACAAAA 8341 37 100.0 34 ..................................... TAAAGAATATGCACTTTCGAAAAATACTGTTTAT 8270 37 100.0 34 ..................................... ACAAGAGTTAAAGAACGCGCTTCAATGCCGGAAG 8199 37 100.0 34 ..................................... TTATAATAGTAACAATCTCATTATAAACCCCCAC 8128 37 100.0 37 ..................................... ACAATATGAGTTACGACCCTCACAGCTTGATAGAGGT 8054 37 100.0 36 ..................................... ATTACCATCAGTGTACTTTCGATGACACGGGTTATG 7981 37 100.0 34 ..................................... AGGACTCCTGCCCGGTTCCGTTGGTCATGGAGAG 7910 37 100.0 35 ..................................... ATACAAGTCCCTCTAAGCGCATGAAATGGTCTTCT 7838 37 100.0 35 ..................................... AGATTAGCAATAACGTATTCGATAATTGCAGAGGG 7766 37 100.0 35 ..................................... TAGAGTAATACGTTTAATCTTGTTTCAGCATACTA 7694 37 100.0 37 ..................................... TGACCTCGGATGATTTCGGGGCGAGCTATACTGCTCA 7620 37 100.0 36 ..................................... AGCGTTGTAACGGGTGTAACGGGTGTAACGGGTTAA 7547 37 100.0 36 ..................................... TAGTATTAAGTACTAGTACTAGTACTTAGAGAAAAG 7474 37 100.0 35 ..................................... TGTCCCATGTCCCTGCCCAAAGGGGAAGAAGGACA 7402 37 100.0 36 ..................................... ACTATGATCATTACCGAATCAGAAAAGAACTTTTGG 7329 37 100.0 36 ..................................... ATTGTACATTGGTTCTTTTTCGCGCTCGTTTAAATG 7256 37 100.0 37 ..................................... TTTGGTGCAATGCAGGAGGGCGGGTTATTATCTGCAA 7182 37 100.0 34 ..................................... CCCGTAACTCCATTTTCTGACATTGACGATTCTT 7111 37 100.0 35 ..................................... TAATCCAGCCTATCAAGCCTAATCTTTTTGTTGCT 7039 37 100.0 35 ..................................... CATACCCTGAGATGGTCAGTTATACCGTCTTTTTT 6967 37 100.0 36 ..................................... CATTTGCATCTCATCCTCACATTCATCACATATGAA 6894 37 100.0 36 ..................................... TGAATCATTCCCGGCAAAAGTAGAGATCGTTGAACA 6821 37 100.0 33 ..................................... TAGGAAGGATACTAACAGTACTGATATTTTTAA 6751 37 100.0 36 ..................................... AGGCATTGATTACAGGATATGGAAGATAGTATGAGT 6678 37 100.0 37 ..................................... ATATCTCCGGATAAACTGGAAGTCTTCGAGGACTACT 6604 37 100.0 36 ..................................... ATCATGTTGCGGGGGCATGTTAACATGATTAACGAA 6531 37 100.0 34 ..................................... AGAATAAATATTAATTTTCGTTATCGGTTAAGCT 6460 37 100.0 37 ..................................... CAGTTAGGTGTAATGGATGTGGTAAAATGTGGTCAGT 6386 37 100.0 35 ..................................... AACATATCCGCATTATGATGAAAACCACTATCAAG 6314 37 100.0 36 ..................................... CAATGAGAGCATTGTCTACGGAATCCGTTTTCAGCG 6241 37 100.0 35 ..................................... TTTCTGCTATTCGTCGGCTTATAGTCGCCTGATCT 6169 37 100.0 39 ..................................... GGCCACGCACTGCCGGTTTCATATAATTCATCTAGTATA 6093 37 100.0 35 ..................................... CTGTAGGTTCCTCAGTTGATTCCTCTCAAAAACTC 6021 37 100.0 34 ..................................... CCATGAATCCAGTAATGGCAGAATATGCAGCAGC 5950 37 100.0 35 ..................................... ACTCCGATATCTGCAATGCAACCAAGATCCCCAAA 5878 37 100.0 37 ..................................... AGGACGTGTAGAGCCTGTTCATTTCTGAGGTGTCTGG 5804 37 100.0 37 ..................................... CCTGCGCCGGGTGGACCTACTATTATAGTATTTTCAG 5730 37 100.0 35 ..................................... TATTTTCAGTCGTGAGTCCTGTATCTCGATCAAAA 5658 37 100.0 36 ..................................... ATATCCTCTTTAGGGATCATTCCAGGCAATTTTAAA 5585 37 100.0 37 ..................................... ATAAACTAAACACAGAAACGATTCTAGTAGACGGAAT 5511 37 97.3 35 .....A............................... TACAGTGCTTCAATAGGTCCGGTCATTTTCTTATG 5439 37 97.3 34 .....A............................... TTCAAGCTCCGCGTTAACGGTTCCGCGTCCTACT 5368 37 97.3 36 .....A............................... AATGCAACTTATTATGGGGTATGGTGTGCTCCTGTC 5295 37 97.3 35 .....A............................... TCTGAGAGTTTCTCCGGCTTCCGGTACTCTTGTAT 5223 37 97.3 35 .....A............................... AACGGTGATAGAAACGGGCGAACTGGCATCCTCAA 5151 37 97.3 35 .....A............................... TCGGAATCGGCTTCATTGCCCGGATAAGAGTGAGT 5079 37 97.3 34 .....A............................... TTTATAATGTACCAGATCCATTCTGGCTGAATTA 5008 37 97.3 37 .....A............................... TTTTAGAAGAAAGGGAGCCACCCTTTCGTACAAAAGT 4934 37 97.3 35 .....A............................... CTATGTTGGCCTGCCCATCTACGACTTCGAGGCTC 4862 37 97.3 38 .....A............................... TATTCAATACCTAGATTAACTGTATGATCCCTGTGACT 4787 37 97.3 37 .....A............................... TCAAGACTGTCAAGCGCATTATTAGCCTCTTTGAATG 4713 37 97.3 33 .....A............................... AAAACCTTAAAGACTTAGTAGAAAAGTCAAAAA 4643 37 97.3 35 .....A............................... AAAAGCTTGCAGACTTCTCTGCTTCAGACTTAGTT 4571 37 97.3 35 .....A............................... AAAATACAAGTAAAGTAAGCCACACAATCCCGCTC 4499 37 97.3 35 .....A............................... AAAAATCCCTCAAAAAAGCCTTTTCTCAAATTGAA 4427 37 97.3 34 .....A............................... CCAACGTATCAAGAAATTGAAGTGACTACTCCCA 4356 37 97.3 36 .....A............................... TTGATTCTTCCAACGGGTCTACAAATACCGCGTCCC 4283 37 97.3 35 .....A............................... ATGGGCTGTCTAAAGGGGCTAATGGGGCTAATTTC 4211 37 97.3 36 .....A............................... CGTCCCATCCGGCAAGAGCGAGGTAATACATGGCTT 4138 37 97.3 34 .....A............................... TTTTTCAAAAGAGGACATTAAAAAGAATAACAAG 4067 37 97.3 36 .....A............................... TTGGAAACTCGCAAATCCTGTAAAAATTGAAAACCC 3994 37 97.3 35 .....A............................... TACAAATCCTGGACATTTCCAGAATATGAATTCCC 3922 37 97.3 34 .....A............................... TTACAATGATCCTGGATACGGGTCAAAGTCGGTA 3851 37 97.3 37 .....A............................... TTTTGCTAGCTTCTAGCATTCTCACACTTAATAGCTG 3777 37 97.3 35 .....A............................... CAGTTGCGGTATGTTCTTTGACACCTACAATAATT 3705 37 97.3 34 .....A............................... AATAATAATACAACAAGTCATCCAAGTGACGGGT 3634 37 97.3 43 .....A............................... TAACCCTCACAAACAGGGGTAATCTACTGTTAGAGTGCCTGAC 3554 37 97.3 32 .....A............................... TTATCAGCGTGGATATAATACTTATATTTCTT 3485 37 97.3 37 .....A............................... ATTTTGTTCGGGGATTTTAGATTTTTGACTTTCGACA 3411 37 97.3 36 .....A............................... TGGTTGCCTGTCCTTGCCCGTCAAGAACGGTATTGG 3338 37 97.3 38 .....A............................... CGTGGATGAATTAAGTTTGAGTCAGCGATATACAAATA 3263 37 97.3 38 .....A............................... TACATTGGAACCCCTGCATATCATCCATTGGTTCAAGT 3188 37 97.3 34 .....A............................... AATGTTAGCTGCCGATTCAAGAGCTGGTCCGAAA 3117 37 91.9 0 .....A.............................GT - Deletion [3081] 3079 34 78.4 36 ---..A..AGT..C....................... CTGAGGTAGTAACGATTTCTCCTTTGTTGGTAATAC 3009 37 81.1 35 TG...A..AGT..C....................... AATCTTCAGGATGCTGCCTTCTAATTTAGCAAAAT T [2994] 2936 37 83.8 34 .G...A..AGT..C....................... TTTACAATTGAGTCCGGGAATTCGAAGTACTTCT T [2921] 2864 37 81.1 36 GG...A..AGT..C....................... TTTATTCTTCCTTTCCTTTTCCTACTTGCGCTTTCC T [2849] 2790 37 78.4 0 TG...A..AGT..C......................G | T [2774] ========== ====== ====== ====== ===================================== =========================================== ================== 111 37 98.2 35 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : TTGTTCTCTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTAAGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAAAACCAGACTCTAGCCAAAATACAACTGAAACTATACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGGTCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACCGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAAAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTGT # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [41-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 9374-16011 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPT01000126.1 Methanosarcina mazei strain 3.H.M.1A.1 scaffold42_1_size29121-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================================================================== ================== 9374 30 100.0 36 .............................. GCCGGTAAGAGAGCTCCTGATAGAATCCGGAAAACC 9440 30 100.0 34 .............................. GATATCCAAGAAGGATTAATCAAAATAGTTCAGG 9504 30 100.0 36 .............................. TCAAATTCATTTGATCTGCATTTGTATCATAGGTAG 9570 30 100.0 37 .............................. GAGCTTAAAAACAACCCTCAATCTGTGAGACAAGAAA 9637 30 100.0 38 .............................. GATAGAAATAAACGAAGCAATACAAGCAGGGGATTATC 9705 30 100.0 37 .............................. ATGTTTATATCCACGATAATAAGTTTCTGAAAGGCTC 9772 30 100.0 36 .............................. AGCTGAAAAGTATATTAGCATGAAAAGCAAGCCCGA 9838 30 100.0 38 .............................. CTTGGAAGCTGGGTATTCTTAGAGCAAAAATTCATCAT 9906 30 100.0 35 .............................. GATTTGTAGAGGTGTGAAAATGACCTCTAAAAACT 9971 30 100.0 35 .............................. GGGGTTTTGCCTGCTCGGATACATTATACAAATCT 10036 30 100.0 37 .............................. ATGGAGTCTTTCAGGAATACATACCTGGTGAGTACTG 10103 30 100.0 37 .............................. GCGCAATTGAACTCACTGTCATAGACATTAATATCCT 10170 30 100.0 35 .............................. TGTAACCCTTGAATCAATTTCGTAATTATCGGAGA 10235 30 100.0 35 .............................. GACAGTATAATATAGTCCCCTGCTTCGATAGCCTG 10300 30 100.0 35 .............................. TTCCTCCAGCTTATACTAGGTACATAGGAAAGCAT 10365 30 100.0 35 .............................. GTAGCTGATTCCTTCGAGATTACTGCCGATTTTGA 10430 30 100.0 36 .............................. ACTGTCACTTCTGTAATTACAGGCTGCTGAATTATA 10496 30 100.0 35 .............................. AGCCGAAGCCCTCACCGAAGAACTTGCTAAAAACT 10561 30 100.0 35 .............................. TTGTCCATATCGCAGGGCTCTGTAGGAGACTCCTG 10626 30 100.0 35 .............................. TTCTGATCGTCTGGACATTCCAGTGAACATGGGCG 10691 30 100.0 37 .............................. TTGTGAAAGGCTCTCGCGCTCCTTTCTGAAAAGTCGA 10758 30 100.0 36 .............................. GGCTCCCAATGTGCGCTCTGAGATCCTCTGCTAAGA 10824 30 100.0 35 .............................. GTTGGATACACTGAAAAACCCATGTCATCGAGATA 10889 30 100.0 36 .............................. GGAGCAACAGCAACAACACACAGCGATACTCTTATT 10955 30 100.0 35 .............................. ATTGTTGTTAAGGGCAACACTGCAAACAGCATAAA 11020 30 100.0 37 .............................. TAGGTACATGATTCATATCTGCAGAATCACAAACAAA 11087 30 100.0 37 .............................. TACAGATATACTATCTGTATCGGAATCAAACTGACCA 11154 30 100.0 37 .............................. CCTGAACCTGAGTTAGTATCGCTGTAGAATGTACAGT 11221 30 100.0 34 .............................. ACAACCTCTCTGATTCAAGCCTCACTCTTCAAGC 11285 30 100.0 36 .............................. GATCTTGACTATTTCACAGGGCATATCAAAAAGATT 11351 30 100.0 35 .............................. TCGTATACCTTCGTTTTTTTGAAAGTTAACCTTCC 11416 30 100.0 35 .............................. GATAAACAATGATGATACACGGTAAAAATGAAAAC 11481 30 100.0 36 .............................. AGAATAATAATTTCGGATTTAGTAGGGATATACATG 11547 30 100.0 36 .............................. ACGTTATCAGGCCGCATATTCGCAAAGAGTAACACA 11613 30 100.0 38 .............................. GTGATATTAATAGCCCTTCCGGGGAAGCGTGTATAATA 11681 30 100.0 37 .............................. GAGTACGAATGTGGCAGGTATGGCGGGACTTCTGAAG 11748 30 100.0 37 .............................. ACGCGCTAGAAATCGGAGTCAGCGGAAGCGGAAAATG 11815 30 100.0 38 .............................. GATTTTATGATAGCACCAACTGTCCTTAACATGGGAAG 11883 30 100.0 36 .............................. GTTACTTACGCTAATGAAAAAGAAAAAGAAAAGAAA 11949 30 100.0 35 .............................. TGTAGTATCAGACTAACAACGGGTTAAAATCCCGG 12014 30 100.0 36 .............................. GTTATGAAACCTCCAACCGCTCCAGCTGCGGTAATT 12080 30 100.0 35 .............................. CACTCTCGCCGCGATTTAAAAAAGTTTATTAAATC 12145 30 100.0 35 .............................. ATAAGATGTACGTCATTTGCAAGGGCGGTAACTAC 12210 30 100.0 37 .............................. TAAAAAATATAGCAACATCAGGAGAACTCTACAGAAA 12277 30 100.0 37 .............................. GCAGGACCATCAGGCGCAAATGAAAAATTTCTGACTC 12344 30 100.0 39 .............................. TAGTCTTCAGAATCATCTTCTCCGAAGTTGACTTTCACA 12413 30 100.0 34 .............................. ATACAACAGCCCCTAACGCCCAGATCAAAGGCCC 12477 30 100.0 37 .............................. CTTGCAAAAGAAATAAACAGAATGATTGGAGTAGAAT 12544 30 100.0 35 .............................. TTTCTTCAGGTTCGGATATTACAACCCCCATAAGG 12609 30 100.0 38 .............................. AGCATCGTTTCAACCATACCAGAATGGGAATATGAAAA 12677 30 100.0 35 .............................. GTTATCTGCAGCCCGTGGAGACCATCGTGAGCAAC 12742 30 100.0 35 .............................. ATGATTCTGGAGATATAAAAGAAGTCAACATAAAA 12807 30 100.0 46 .............................. GCGAATGCCGTTTTCAATTATCCTCTTCTGAGAATCAAGTTCTTCG 12883 30 100.0 36 .............................. ATTTATAAAAGTGGACATATATAATATCATAAAATC 12949 30 100.0 35 .............................. GACAAATGACCTTATAAGGAAAAGCCTCTTATCCA 13014 30 100.0 37 .............................. GTCAATACCTCCGCCGGAGGGAGTACCGCAAAGCGGG 13081 30 100.0 36 .............................. GCCGTAATGAAAATGGCTTGCGGGACCGGATACACT 13147 30 100.0 36 .............................. TGCTAAATTAAGAAACGAGCAATCCGGCACGGTAAC 13213 30 100.0 39 .............................. CAGGTAATCTGCACAACCACCCCCAGACCAATTAAGATT 13282 30 100.0 37 .............................. TTCACACCCTCCCTAGAAGGAAAGCAATGACTCCAAG 13349 30 100.0 35 .............................. GTGGAAAAAGCAAAACATCTCGGGAACTCAGTCAT 13414 30 100.0 37 .............................. CTGGTCGACAGGAGCACTCTTGTAAGCCTCTGGAACG 13481 30 100.0 35 .............................. CTCCTCAACGCCTGGTCTATATGCCTCGCAAGCGG 13546 30 100.0 35 .............................. GTGTCTGATAGGCACTCGTTGCGACATCCGAGCCC 13611 30 100.0 35 .............................. CTCCTCAACGCCTGGTCTATATGCCTCGCAAGCGG 13676 30 100.0 35 .............................. GTGTCTGATAGGCACTCGTTGCGACATCCGAGCCC 13741 30 100.0 38 .............................. CCCTGATGCTTGAAGTCAAAATCCAGGACCACGAGCAG 13809 30 100.0 38 .............................. TTCCAGCCCTCGCCATGCATTGTTGCAGTTTGCAGCCG 13877 30 100.0 36 .............................. GGAGCATGAAGAGAACATCAGGAAGGAGGTCATGGC 13943 30 100.0 34 .............................. GAAGATGCTCCTGAAAAGACCCTTGAAGACAAGA 14007 30 100.0 37 .............................. TAGGAATGGGCGGGAATATCGCCGGAACTGTGCCAGC 14074 30 100.0 35 .............................. GTAATTATCAGCGGGGGTAGACCGTTCTACCCATG 14139 30 100.0 35 .............................. AGGCAAAAACGAAAGCAAAAGAGAAGGAGGACAAG 14204 30 100.0 36 .............................. AAGGATATCCAAAACGACCAGAAGGAGGAGATCTAA 14270 30 100.0 35 .............................. GAATCAAATATCTACCCAGATGAAATAGAAATCGA 14335 30 100.0 36 .............................. CTCAACCACTTCAGCGAAAGCAATTGCAACAAAAAT 14401 30 100.0 35 .............................. TTCGATATTTGCTGTAGAGGTCTGGGTCTTCCAGG 14466 30 100.0 36 .............................. TGATTCTAATTGAGTGTGTGACGGGGGATAATCAAA 14532 30 100.0 36 .............................. TTAATTTCATAGACTCCGGCGTTTAAATGCACGATA 14598 30 100.0 38 .............................. CATACTACGCATCGAACAGGTTTGCATTTCTGAACCGT 14666 30 100.0 35 .............................. TATTTCCTGGGATAGTTGTTGTTATTTTTCCCCTG 14731 30 100.0 35 .............................. CCTTTAGATACCGGAGTAATGTGATCTATCTCAAG 14796 30 100.0 38 .............................. CTTACAAAATCAAATTGATTCTTTGAGGCAGTAACATG 14864 30 100.0 35 .............................. TTCTCTGTAAAAGTCAGATCTGTATCAGTTGAAAC 14929 30 100.0 35 .............................. CTTTAAAGAATTGCATATTTTGACTCCTTTATTTT 14994 30 100.0 36 .............................. GGAATTATAGAAAAGTATACTGCTCCAGTAAGTGTA 15060 30 100.0 36 .............................. GCCCCTATCAGGAGGGTAGTAAATGAAAATAATGAA 15126 30 100.0 35 .............................. ATGTACGACGCGGGCAACTGAATTACTTTAATCTT 15191 30 100.0 36 .............................. AAAGCTCACTATGCAGCTACACCTATCAGATAGAAT 15257 30 100.0 36 .............................. AGTTTAACAGCCTTCCCGCCTCTCGTTTCAAGTAAT 15323 30 96.7 35 ...T.......................... GCCGATGAGGTCCGGACTTTTCATTACTCGATATT 15388 30 100.0 37 .............................. ATTACAATTCCCTGCAGTCCTGCAATGAAATAACCAT 15455 30 100.0 35 .............................. GCATTAGTCATGTTCTTTTCATCATAGACAATCTG 15520 30 100.0 36 .............................. AATTTTTGAGGCCGTTCTAAACGGCTATTTCTTTTA 15586 30 100.0 38 .............................. GAAAATATCTCACTTCAGGCCGATACTGAGAACTATGG 15653 28 93.3 38 --............................ CTGAAACAGGACAACAAGACAAGCTTATGAGGGTTGCC 15719 30 100.0 35 .............................. ATGCCCGCGAGGACCAGGCGGGACACAAGGAAGCA 15784 30 100.0 38 .............................. GGATATAATTGAGATTTTCCCCTGAAATCAGGATAGTC 15852 30 100.0 100 .............................. GTACTTAGAAAAACCCTTATGTATAAAATATTTCAAAATTTGGAGAAGGAGAGTCAGTCAAAAAGGAAATTAAAAAGTTATATACTATTAGAAAAATGTA 15982 30 80.0 0 ..A.T.....TT.....A...........A | ========== ====== ====== ====== ============================== ==================================================================================================== ================== 100 30 99.7 37 GTTAAAATCAGACCTTAGAGGGATTGAAAC # Left flank : TATGAACTGGGTCCAAAATAGTGTTTTTGAAGGCGAACTCACAAGAGCCGAATTCGCAAAAGTTAAGTCAAGACTTAAAGAACTCATTGAAGAAAATTCTGATCACATCATTTTCTACAGCTCAAGAGATCGGAAATATCTTGGAATAGAAAATCTCGGAACCCCAAAAGCAGATACAAGCAATATCATTTAATTGCCTCGTCCATGAGTTTCATTACTTAGATCTTCATACTAGAATTAACACTTAATTTATATATTTCTCCCGTCTGCCTTTTTTGCAGTTCCTGTTTCTCCTCTTTTTTCGTGGATCTTTATATATGAACCTCCTGAAGCACGATCCCCGAAATCAGCTCTTAAAACCCTCTTAAAAAAAGAATGCTTTTATATCAACAGTGAACAAATACCATTGAATAAAAACAGTATCATTCCCCCGAATTATTTATCACCCATCTGACAGGATCAGGCATCCAATTTGCCTAAATTCGGGGAAAATTTCCTTG # Right flank : ATTTGGAGTTCGTAATTTTTATTTAATAATAAGACCTTCTAGGGATTATTCTTTTTTGCATTTTATGTAGGGAATAATAATTTACCATTTGGAGTTCGTAATAAAAAGATTTATCTATTTGAAATGCTTTATACTCTTTAACTCATTAAGAAAAACGGCAGGATGTAAATACAAAATTCAAATAATAGTCAGGGAACAAGTTATGAATGAAACAAATCCCGTTGAATTGACACTGTTGTTTTTAAGAGTACTTGAATTTGTGCAAAAAAAAGCCTATATTCGAAGAACGGACAAAAAAACAAACCTTGGTAATGAAAAAAAAGTTATCTGGAGGTTAAACATTGCTATATCAATATACAGGTAATCCATTTGTAGATGGGGGAATATGGGCAATTTGTGAATGGGCAAAAAAGAAAAATCCAAAAGAACTTGAGATTGAGGATATAAAGGAAAGTACTTCTGATATAATTCCAATTTATCTGACCGGAGCTTGGGGAAAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTTAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 21594-21849 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPT01000126.1 Methanosarcina mazei strain 3.H.M.1A.1 scaffold42_1_size29121-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 21594 35 100.0 40 ................................... CACTGAATCCCTGATACTTTTGAGCTCTTTTTTCATGGTA 21669 35 100.0 37 ................................... CATCTGTAGTCATTTTAGATATACCTCGCAAACATTA 21741 35 100.0 39 ................................... CTTTCATTTTTTGTGACACTTATTGTTATATTGTCATAA 21815 34 77.1 0 ....T.....T..........G.-GCCT....... | C [21846] ========== ====== ====== ====== =================================== ======================================== ================== 4 35 94.3 39 TTCGCGAGCAAGATCCATTAAAACAAGGATTGAAA # Left flank : AATACGTCTACAAAAATCAGGAATTAGTCGCAAAGAGCCTTGAACTGTTAAGTAAAGAAAATATCCTTGGAGAAAGCAGAATTCAAACACTTGTGGACGAAGTTTATTCAAACGGATATCAGGGTTCTGATCTGGCATCCTTCGAGATGGTAAAAAAGAATTTTTCCACGTATCATAATACAATCGTCCCTTTTATTAACGAAAGAGAAAAAGAAGACGAATTTTATAAACTTTATCAATCTGTTGAAGTTGTTCCAATCCAGTTTAAACTTGAATATCTTGAAGAAATCGAAAACAAAAGGTATTTTGAAGCTATGAAGTATGTTGCCTCTATAAATTTTAATCAGTACAAAAAACTGCAACATAACAACCAAATTCAGATCGATTCTAACATGATATTTGTAAGTGTTGAATACAGTTCTAAATTTGGTCTCCTGTTAGATTCAGATGAATCTATTAAGGGAATTTTTAACAACGACTCATAATAAGTATTCATTATT # Right flank : AAGTGTTGTGACCTGTGTAGATGTCCGACATTAATATTTCGAAACTTCTACAACAGCCAATATATATCCTCAGTGCGGTAAAGAGTCTTAGAGACATCTGGAAGAGAAAAAAGAAGAGCTGGAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAATATCCTGAAAGAAATTGGAAGGTAAAAGACATACAGGAAGAGACCTAAACTGTATTATAGCATAATAAGAAAAGAACTTCTGGCAGGAGGAATAAAAACTATGACAGAAATGACTCTAATCGAAGCACTGAAAAAACTTGCATTAATCACCAAAAAAGGACTGGATGAACTGATTCATATCCCAGGTAATACAAGTGGACCTATTACAATTGGTGAGGCAATTAGAGAAATACAGGATCACGATTCTGACATTTCTGAAACTGATGATTATATAATAGGTAGTGACGGTATCTGGAAAACAGGGGAAGATGGAAGCGAGATAGTATATCAGATTAAA # Questionable array : NO Score: 8.57 # Score Detail : 1:0, 2:3, 3:3, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCGCGAGCAAGATCCATTAAAACAAGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA //