Array 1 87116-87682 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWD01000001.1 Photorhabdus hainanensis strain DSM 22397 scaffold_0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 87116 28 100.0 32 ............................ TAAGTTAGCGGCAATTGGCCCGGCATAGGTCA 87176 28 100.0 32 ............................ GTGACTGATCAATGCGCAGGCGGTGTAATATC 87236 28 100.0 32 ............................ AAAAGCCGTAAAAGCAGCTTATGATCTTGCAG 87296 28 100.0 32 ............................ TAAAAAACGGGTAGCACGCCATGCAGCTCGAC 87356 28 100.0 32 ............................ TGAGCCGTGGCGATCTTTGTGCTGGTTCGGAG 87416 28 100.0 32 ............................ GTTCGGTGGAAAACCCTACTTTATAAGCGGTA 87476 28 100.0 32 ............................ ATATGCTTCATCAGTGCGGCATATGCGGGACT 87536 28 96.4 32 ....G....................... ACTAATGATACGGAGTTTGTTCAAGCATTACA 87596 28 100.0 32 ............................ GATAAGTAGTTTCAATGCGATCTTTAATAAAA 87656 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.3 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCAGAAGAAGCTGGTCTGGAAGTTGTTATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATCTTTATCAGTTTGTAATTATTTGGTTTCCAATCGGCGGATGAAGGGAGCCTGGCGCCAATATCTAATACAAACTAAAGCGTTGGATGAGAGGCGGTGCCCGGGTTCCAAGTGTTCAAATAATGTTTAAGTTGAATATTGAGTTTACTGTTCTAGACATCTTATAAAGTCTATTTTTACAGTTATTACAATATCTTAAGGCAATTTTAGTTGTTTTTATGGTTGCTAAGTTTTGCCAGAATCTACACTTTTATTGCTATAAGATAGGTGTTTTTGCTGTACCCCAGTTTTAACCCTTTTTTATCATTAAAAAATAACCTATTGATTTAAAAGAAAAATTAAATATCGCCTAAAAAAAGGGTTTTTTCATTTTTTATCATTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : ACACGATAACTGCCTTAGGTTGTTTAGGTATAAATGGGAGATTAATTGCGCAGCCTTGGGGCCAGTAGCTGATTGCGGATAGATTCTGCTAGTTCATCTAGAGAAGGTTGCTCTGGATGTTCATCAGATGTTTCATAGGCTAATTGCGCTTCAGCCAAATAAGTATGTACAGGTTGACCGTTGTCATCTTCCATCACAACGTGATACCAAGGAGCGGAACGCAAGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGAGAGTATTCCACATCAATATCCACGATGACTCCTAAATAACCAAGAAGCTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGATCTTGCATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCATACCCGGTGGTTGAAGCCTTTTTTTGCTTTAATTGTGAGTGTGACTTCATCTATTTCAGGTTAGCTGTAGTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 114714-116000 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWD01000001.1 Photorhabdus hainanensis strain DSM 22397 scaffold_0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 114714 28 100.0 32 ............................ AACTCCAAAAACTACGAACAAGGCAAGGAACT 114774 28 100.0 32 ............................ CGGTTCCTCATCGAGAGAGTGCTCCTCTGACC 114834 28 100.0 32 ............................ TTGACGACTAGAATGAACACCAATTCTTTTAT 114894 28 100.0 31 ............................ TCGGTGCAAGGGACTGGAATGGGACTTTGTG 114953 28 100.0 32 ............................ ACACAGCGACGCTGAAATGCCTTTACCCTGGT 115013 28 100.0 32 ............................ GGAAACACCAAAGAGGGCCATTTACTAACAGC 115073 28 100.0 32 ............................ ATAATGCATAGCACGCAAGATAATCTCTCATT 115133 28 100.0 32 ............................ ATTAGCGCTCGATTGGGAAGAGCGTATTCAAT 115193 28 100.0 32 ............................ TGATGAAATTGAGTATGACAAGTTGCCCTCAA 115253 28 100.0 32 ............................ TGAATTACACCGGCTATTAACAAATATTATCC 115313 28 100.0 32 ............................ TGCCGTCGCGGCTCCAGTTGGCAAAGAACCAT 115373 28 100.0 32 ............................ TGAAATAATCGGAAATGTTGTCATACAAGGAA 115433 28 100.0 32 ............................ TCCATGTTCGGGAAGAACCGTTGAATTTGCTC 115493 28 100.0 32 ............................ AACCACAAATAAATCGCCTAAAACTGTTTTAT 115553 28 100.0 32 ............................ TGAGGCGATTTGATAAAGTATTCTTATATTTT 115613 28 100.0 32 ............................ AGTTCAATATCTATTTGAATCGCCGTCGCTAC 115673 28 100.0 32 ............................ TTCATCTAGCCCAACCCCCTCAGTATCAAGCG 115733 28 100.0 32 ............................ AAGGGGACAGTAATAATATCAGTACGCTCGCT 115793 28 100.0 32 ............................ TTATGAGTGAGGTTTTGCATGCAAAAAATTGG 115853 28 100.0 32 ............................ AAAGTGATTTTTGGGGCGTGGTTAGCAGAGTC 115913 28 100.0 32 ............................ AATAGCCCCCATCTTTTTAGCAAATGGCCCAT 115973 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTGCATATGGCCCGACCCGAGTCAAAACAGATATTGAGTCAACGGAAAAGCCTGGTAGAACCGGTATTTTCGGCATTACGGGGAATTCAGAGACTGGAACGCTTTCGGCGTAAGGGATTGTCAGCGGTAAAGCTGGAGTTTTCCCTGCATGCAATGGCCTATAACTTATCAAGAGCGGTGGCTCTGATATTAGGGATTATTTTTAGCCTGTTATCCATACAAATAACAGGCTGCCCAAAGTCAGTGATTGAATTTAACTTGATGCTTGAAAAAGTGACCTTAACCTTTTGCGACACCCTCTTTACGGCGGGGAGCAGTCACGACAGACGACTTAAGTATGTGATTATATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAAGGGAGTTGTAATTGATTGATTTTATGGGTAAATTAATTATCTCTTATAAAAAGGGTTTTTCACTTTTTAGTAGTTATGCTCTTTGAAAATCAGCATGTTAAAGTTAATATGTAACA # Right flank : ATAGAAAGTTTTCTTCTTCTTTAAACTATCGAGTGTGCTGCTACACAAATAGCTTAGAGCATAATCATTCCTGTTTAGGGAAGGTACTATGCTGTGAATTAGTAAAGAATTGTAAATTTTTTTGATTTACCTCTGTGATGTTTTACTTGTGTAAAATTTATGCATAATATTTACCATAAATGAAATTAATTAGTTAGGTAATTCTACATTATGGATAACAACTTTTCTCCTAGTGACCTTAAAACTATTTTGCATTCCAAACGCTCGAATATTTATTACCTGCAATATTGTCGAGTATTAGTGAATGGTGGCCGTGTTGAGTATGTCACTGATGAAGGAAAGCAGTCCCTGTATTGGAATATCCCAATTGCAAATACTACCGTTATCATGTTGGGAACGGGTACTTCTATTACTCAGGCAGCAATGCGTGAATTCGCTAAGGCGGGTGTTTTAGTTGGTTTTTGTGGTGGTGGAGGTACACCGCTATTTGCGGCTAATGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 125398-126025 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWD01000001.1 Photorhabdus hainanensis strain DSM 22397 scaffold_0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 125398 28 100.0 32 ............................ ACCAGCAAAACCGACACCAATAGGTACATTGG 125458 28 100.0 32 ............................ GTGTAATTTTGCAAATTCTGACTGATTCATTT 125518 28 100.0 32 ............................ ATTAACTGTGATCATTTTTATTGAATCGGCTG 125578 28 100.0 32 ............................ ATCCCCAGTAATGTTTTTCTTGCTTGAACGAT 125638 28 100.0 32 ............................ TTGGCTACTTCTTGATACTCGAAGTAGTCCTC 125698 28 100.0 32 ............................ AATCACATTCAAGCGCATCATCTCGTTCCGTG 125758 28 100.0 32 ............................ ACTTTAATTAATATCGTTTGGGCAGGAGCAAC 125818 28 100.0 32 ............................ CTCGTCAAAATGCTCAGTATAATAACTAACAT 125878 28 100.0 32 ............................ AGATGAAACTCTATTGTCTATTGCTATGGAAA 125938 28 96.4 32 ...........T................ ATATGCTGTACTGAGTTTAACAACAGGACTTC 125998 28 82.1 0 .....................AGC.C.C | ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCATTGAATGACTTGCAGTCTTTATCTTGGTTAAAAGGACTTCGGGACTACACTGAAATGACTGATATTCAGCCAATTCCCCAAGAAACTAAGTACTGTTGTGTCAGCCGAGTGCAGGTTAAAAGCAGCGTGGAGCGGCTTCGTCGTCGTTCAATTAAAAAAGGGTGGTTAACGGAGGAACAAGCCTTACAACGCATTTCTATCAGCAAGGAACAACGTACTCATTTACCGTTTCTGTACCTTAAGAGCTTGTCATCAGGACAAAGTTTTCTGTTGTTTATCAAACAAGGGCCAATACAAGACAAACCAACTCCGGGAGTTTTTAGTTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGATATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : CTCAGTTAAGTGCGCTAAAAAAGGTGATATTCTTACATTCCTTAATTCTTATGCTTCTGAGCATATTCTTCACTATTAACCCATTGGTGGTCTTTTTCCCAGGTAAATAGCCACTTGCGGGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGGTAGCCTTTGGGCACCATGACCACATCCTTGTTGTAAACAGCCATTGATTCATCTAGTTCACGGTCATCGGTATAGACGCGTTGCATGCAGAACCCTTGAGATGGGTTCAAACGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGCGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAGCTGGTACAGCCTTCACTGGTAAAGACTTCAACCACCAACAAGCTATTAGCAGGTTTATTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAGCCATTGCCACGTTGTTCTGCGTCAATATCCTGTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4364-4632 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWD01000025.1 Photorhabdus hainanensis strain DSM 22397 scaffold_0025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4364 28 100.0 33 ............................ TCGCTCTAACGTTCCGCCACTGCCTTTACTCAA 4425 28 100.0 32 ............................ TGTACGGCAGTGCACGGGAAGCCAAAGAGAAA 4485 28 100.0 32 ............................ GTATCAATATGTTCTTCATCTGGTGTCGGTTT 4545 28 100.0 33 ............................ CAAACCCGAAAACTGGTCAGATGAGATACTGGT 4606 27 85.7 0 ...C................T...-..T | ========== ====== ====== ====== ============================ ================================= ================== 5 28 97.1 33 GTGTACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTTTTTCTGAATGGTCAATGATAGTCGGTAATACTTATTTTTTCGATAACAGTTATTGGTGAACGGTTATCAATGTTTTATAGGGATTTTCCCTGGCAGGAAAATATCTCATGTCATCATATATAACGATGGATTTGATATTGAAAAGTCAGGCTGATATGAAGGATATATTATTACAGAGGAGCATCTGTATAAGGTAAAATTCAGATCTTACAGCCGTTATTACCTTGTATCACCGGATGGGAAGAAATCGATTCCGCTGAGTGATGAATGAGATAAGGTAGAAGATTTATTGAAACGTAATCGTTAGCTAAGAAAGTTGCGTCAGTGGTAACTTAAAAACTTGAGCCTCTCTTGACCTAATTTTTGACCCTTTTTTAGTAACCAATTTTAATTCATTGATTTTTAAACAAATATTGTTTTCCCCGTAAAAAAGGTTTTTTTATTTTTTATAATGATTACACTTTAACATTCAGTAGGTTGGGGTTAATATGTAACA # Right flank : TTCTTAAAGTTCTAGGTGTAGTTTAGAGTTATAAAAGCAAGGAATTTCTATCGAGTGATAAGACTGAAAATATTGGCTTCATATTGAGATTGGTAAATACTCTACCTCAAGGATGAGGTAGAGTATAAATGAGCTTGAGTTTTAATTGAGGCTTTTCGCATTTTACATGAAGCTACGCAAGCTTTATCATAAATTTAATTACTTAAATTTCCCTATAATCCAACTTTTCGAATGAATTTATAGCGCTATTTTTCGATAGATTATAAATCTCCACTCCTTTGCTTATTGCTATTTCATGAGCTAGGTTGAAACAAGGAATGATGAAATCGTGTAAATTATTATTTAATTTGGTATCGAGTTTGTCATTTTGAGTTTCATAAAATCTTGGTTTTGAAAAATTATTCATATCTAAACCTGCGAAATATATTTTTTTATAGTCCAAAAATAACGCTATTTGTAGAGCGGAATAGGCAACTGTTGTTCCGTTATAGAATCCGAGA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 8295-8622 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWD01000025.1 Photorhabdus hainanensis strain DSM 22397 scaffold_0025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8295 28 100.0 32 ............................ ATCGATGCGTAATGCAAACGCTCGCTCTGGGA 8355 28 100.0 32 ............................ CAAGGCAGCCATTAAACAGTTGTCTGAACTGA 8415 28 100.0 32 ............................ ACGCCCCCAACGTATGTATATGTTATATATAG 8475 28 100.0 32 ............................ AAATTGATAAATTATTTATCAGTTCATTGCAT 8535 28 100.0 32 ............................ TTCTACAGCCTCTGATAATGTGGCCATTCTAT 8595 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 34 GTGTACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATTGATAGTGGCCGTGGAGTTTTAACTCACCAAGGGGATGCTATCAGAAATATTGAGGGCTCATTTCCTGGGGCAATAGCATCAAACTATCATCTGGCAACAAAAGGGGCTTTTTATGCTAGTGAAACTCTTGGAATGGGTGTAGATGGTAATCCTAAATCAGTGGATCATTTTACCCGGGATGCTGTATACACTGCATACGGTTTTGGGTTCGCCGCATCAAGTGTTGTTCCTGTGGCCTCAGAGAACCGCCCCCGCAATATAGCATTTAATTACATAGTGAGAGCAGCATAATGGTTGAATAAAAATACTCTTTTATAGCTAGAATATAGAAGAGAGGCTGTTCTACTTGAATGGAAGAAATTTTGACCCTTTTTTAACGGAAAATTTTAATTTATTGATTTTTAAGTAAATATTATTTACCCCGTAAAAAAGGGTTTTTTATTTTTTTATAATGATTATTCTTTAACATTCAGTAGATTGGGGTTAATATGCAACA # Right flank : AGACAGCGTTACGTTGTTTTCCTCAGATTTGCAGATATGTTCTTCTAGACGGTAGCGAGTCATATTAAGATAACTAGGGGTATACAAGTATTGGTTTATGAAAACAAGTAATACTTGTTTTTAAGGTGGGTTTATTTTTACTGATTGTTGGAAATGTGACTGCTTACACATTCTTAGATGATAGTGGAGGATATAGAGTAGAAAAGCCACCGAGTGGTGGCTGGTATAATTATTGTGCTTTCTTTCTAAAGTTATCGTCGTTTTTAACGAACTCAAAAGCATCAAGGATAATACCTGTTATCCGCAATATATCTTCTGGAGTTTCTATAAATATTTTTGAGTGATTAGCAGATAATCCAGCCCTATTAACTTCGTTGGCTAATATATCAGTTAGTTCAATAGGTATCTGGATGTAAGGTTTATTCTTCTTGTCAAAGTATCTTATTATCCATCTGTTTGATTTTCCTTGATAAAGAATTCCAAAGTAAGATTCTGTATCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 17607-17459 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWD01000050.1 Photorhabdus hainanensis strain DSM 22397 scaffold_0050, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 17606 28 100.0 32 ............................ GCTCTCGATAAATACGACGATAAAGCAGTCAC 17546 28 100.0 32 ............................ ATACGACTTGCTAGTTCACGTTTTTCACTCTT 17486 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGATGATGTACGAAGCTTTACAACCAGCTATCCGTTATATGCAACGTCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCGGATAATCATCGTAGTGGAAAATTGTTGGAACGATTGGGTTTTGAACGTGAAGGTTATGCCAAGAAATACCTGATGATTAATGGAGTTTGGCAAGATCACGTATTAACCGCATTGACAGATGACAAATGGAGTGGAAAAAGTTGATTATTAAGCTGTACTGTCACCAAATAAAGTAAATTAAATTAGTAATGATGAATTAAACCATCGTTGAAAGTTAGCCTTCCCCGTACCTTATTTTTGACCCTTTTTTAAGGGTTGATTTTAATTTATTGATTTTTAATGGAATATTGTTTCTCTTGTAAAAAAGGGTTTTTTCGTTGTTTTATTAAAATATGCTTTAATCGTCAGTAGGTTGAAGTTAATATGTAACAA # Right flank : TGAGTAAGCTTCAATGAGTTGACTTATTTGACGCACTGACTTCGGTTGGTGCGTTTTATTGAAGTGGCTATTTGAGCTTTCTGTAGTAAGGCTAGTTGCAAGTCGCCATCATCTAGGCCAAATACGATGTTACATTGGCAGCTTATAAAAGTTAATGAGTTCTAGTGCATAAGTGTGGATTTATGTATACTCGCCGCTTTTGTTAGCAAAGTGAATGATTAACCATGAATAATATTGCTGCCTTGTCTTTGGCTGCTGTGATGTTTACTAGCGGTTGCGCTACGATTGTGGGTGATAAAACTCAGCATGTTCAGGTTGATAGTAATCCATCAGGGGCCATGTTCTCTATCAAAGATGAATTAGGTAGGGTTGTTGCTCAAGGGAAAACGCCTCAAGATGTGATTTTAGAAAAGTCTGATGGAAGTTATTTTGGTAAAAAAGATTATCTGGTTACTTTTACTAGAGAAAATTCTGAGTCTGTAACGTTACCAATTAAGGCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //