Array 1 231886-233071 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABQ01000007.1 Salmonella enterica subsp. enterica serovar Newport strain R8_4908_R1 NODE_3_length_359272_cov_0.851191_ID_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 231886 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 231947 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 232008 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 232069 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 232130 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 232191 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 232252 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 232313 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 232374 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 232435 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 232496 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 232557 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 232618 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 232679 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 232740 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 232801 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 232862 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 232923 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 232984 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 233044 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 249741-251356 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABQ01000007.1 Salmonella enterica subsp. enterica serovar Newport strain R8_4908_R1 NODE_3_length_359272_cov_0.851191_ID_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249741 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 249802 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 249863 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 249924 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 249985 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 250046 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 250107 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 250168 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 250229 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 250290 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 250351 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 250412 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 250473 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 250534 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 250595 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 250656 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 250717 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 250778 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 250839 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 250900 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 250961 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 251022 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 251083 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 251144 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 251205 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 251266 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 251327 29 100.0 0 ............................. | A [251354] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //