Array 1 20809-21907 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYCB01000007.1 Streptococcus mutans strain UAB-18 NODE_7_length_23406_cov_23.2406, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 20809 32 100.0 36 ................................ ACGCGGGTTCTGCGGCTTTTTAAAAGAGACCGGGGG 20877 32 100.0 35 ................................ AAACGTAGGGCTATCTCTTGGATTAAGTCAGGCAA 20944 32 100.0 34 ................................ TTGACTTCTGATTTTCAGAGTTCCGGACTTCTGA 21010 32 100.0 34 ................................ ATCTGATTAAATCTATTGGTTTAAAATAGTTATT 21076 32 100.0 35 ................................ TATTCTATTGAAGATATCGAGGAAATAGTCGAGAA 21143 32 100.0 34 ................................ AGGAATACAGAAAGGATGGGTGATTTTAGGAATT 21209 32 100.0 35 ................................ TAAAATGCCTGGAAAACAGCTAGAACATGCAGAGC 21276 32 100.0 35 ................................ AAGTGAAAACCTTGCTTTTTTATAGAAAAATCAAA 21343 32 100.0 34 ................................ TGGTGCATCGTCATTACCAAATCTGTTACCAATG 21409 32 100.0 35 ................................ AATATCGTTGACGAAAGAGCAAAAAGAAGATTTAC 21476 32 100.0 35 ................................ ACGATAGAGTTAAACTCTTCTTTGAGGTAACTATC 21543 32 100.0 34 ................................ AATGGTCGAGATAAAGAAACAAAGGCATGGCTTA 21609 32 100.0 34 ................................ AACAGCAAGTACAACACGTTCTGCGTAACTTTCG 21675 32 100.0 35 ................................ AATTTCCAATGGTGATTTGACTAAGATGGTTAAAA 21742 32 100.0 35 ................................ CACTATGGTCTAGAACATGGTATTCCTTCAGTAGC 21809 32 96.9 35 ....T........................... TTTCAACTCTGTATCAAATCCAAAAAGCATAGTTG 21876 32 96.9 0 ...............A................ | ========== ====== ====== ====== ================================ ==================================== ================== 17 32 99.6 35 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : TAAAGCTATTCGTGGAGAATTAGAATCTTATCCACCATTCTTAATCTAGGAGCAAATTTATGATGGTTTTAGTGACTTATGATGTCAATACGGAGACTGTAGCAGGAAAGAAACGACTACGACATGTCGCAAAACTCTGTGTTGATTATGGTCAGCGTGTGCAACATTCGGTTTTTGAGTGTTCAGTGACACCAGCCGAATTTGTAGAGATTAAAAATGAACTCTCAACAATCATTGACCAAAAATCAGACAGCATCCGATTTTATTTACTTGGCAAAAATTGGCAAAATCGGGTAGAAACGATGGGCCGAGATGACAGTTATGACCCCGATGTGGGGGTACTGCTTTTATAAAAATTTGTGTGCGAATCTGGGTTGCACATCAAAACCAGAGACATTCGCGCACAAAACCAGAACTATAGTGATAAAAATTCAGTTTTTATTGAGCCAATTGGTTTAATAAATTCTCGATTTTAGTCACAAACGGTGCAACTACGCGCC # Right flank : TTGAAATCAATCGCATAGTATATGAAATGAGTTTTGTCGCACCCTTTAAAGGTTGGGTTTGCTTTTTGGTATAATAAAAGATAATAAAGGTGGAGAATTTTTTATAAAAATGTCTGGCACTGATTTTAACAAAGGAAAGAGTTCGTCCATGAAAGCAACATACAACATTGATAATCCCAATTTACCTTATCAGACCAACCTTGAACTTTGGCAGACAAGTTTTGGTCTTTCAGCAGGTGGATGGCTTAACGCCATCAGCTTATATGGAAGAATTGGCTGAGAAGCAGGCGCATGGAGATTATTCTTATGAATAGGTCTATGAGGAAATCATTGATTATCACAAATCAACGGATGACAGCACGGCTGAGGCTGATTTGGTTTCCTTGCGTATTGCATAGCATCGGGTTTAGCTTTAGTCCAGCTATCTTGCTGACAATTTGGTGTGAACTGTTTCAGAATATTTTTGGTTGTTCCATTCTCATTGGTTAGTTTCGTCAAAC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 316291-317514 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYCB01000001.1 Streptococcus mutans strain UAB-18 NODE_1_length_625308_cov_20.4866, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 316291 36 100.0 30 .................................... TCATATTTCAGAAGACTATTCAATCGGCAA 316357 36 100.0 30 .................................... TGATGGTTGAAAAACTTCCAGCTAAGCCTT 316423 36 100.0 30 .................................... AGCTAATGTAGAGTGTCAACTAATAGTAGA 316489 36 100.0 30 .................................... GAGGTTTGCGTTATATTGCGGACGACAGGG 316555 36 100.0 30 .................................... AAATTTGAAACTGACTCTGATTATACAGGC 316621 36 100.0 30 .................................... ACTAATTGCTAATAATTATGTATACAGCTA 316687 36 100.0 30 .................................... TGTATGCAATATGGAGAAACAAATTCTATA 316753 36 100.0 30 .................................... TGGAGAAATTTTTTATAATCGTGTTTATTA 316819 36 100.0 30 .................................... CACTTCAAAAGTTCCTGCTGTGTCTAAGGT 316885 36 100.0 30 .................................... ACGTACATAAAATCAGATGCAGAAAGTCGC 316951 36 100.0 30 .................................... GTGAGTTGGGTTGAGATATTCATTTGAAGG 317017 36 100.0 30 .................................... AGCCACAAGATTTGCAAGATAACAAATCCT 317083 36 100.0 30 .................................... CTAAAAAATCATTGAATACACCGCTTTCTG 317149 36 100.0 30 .................................... GAGAATTGGCAATGTATGCACCGCGCTTTT 317215 36 100.0 30 .................................... CTGTGACTAACACAAAGAACATCCAATAGA 317281 36 100.0 30 .................................... CATTTTAGCCATAGATGGTACAATTATACT 317347 36 100.0 30 .................................... AGTAATAAAGTTGAAGAAATGCGACAAGCA 317413 36 100.0 30 .................................... GGAGACAGAAGATGAACAGAACTTCCAGCG 317479 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGGAAGAGGAAGAATATTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAAGGGGAAGATTTGGAAGAAGCCATGAAGAACGCTCGTCAGATGTTAGAAAGTGTATTGGCCTCCTATCTAGATGAGGGAATGAAACTGCCTAATCCAAGTGAGATAAGGAAACTATCTGTTGAAGATGGCTTTGCAACTATGATTCAAGCAGATCCTAATCCTTATCTCAAAAATAACAAAGCTATTCGAAAGAATGTTACCGTACCTGAGTGGCTAGTACAATTAGCAGATCGTGATCAAGTGAATTATTCTGAAGTATTAACAAAAGCTTTGGAAAGGAAACTACAATTATAAAACAAGAAAAGCGCTAGAAAGATTGATTTCTAGCGATTTTTTAGGTATAATATAAGCAATCAAAATCTTTTAAAAAGGAATTATTTGAAGCTGAATTCTAGCTGAGATGAATGGCGCGATTACGAAATGTCGTGACGAAAATTGGTCCACGAG # Right flank : CAATAGAATCAAATTCTCCTAAGTCAGTTAAGTTTTAGAGCCATGTTAGTTACTGATTTACTAAAATGCATTATGCGAAAGATTTTTAAATAAGTAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTTTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGATTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //