Array 1 477870-478568 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDD01000001.1 Salmonella enterica subsp. enterica serovar Muenster strain TRWAIA .SLX_12186.D707_D506.HJ72NBBXX.s_1.r.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 477870 29 100.0 32 ............................. CCCAGAAAAGTTTGTTTAGGCAATCAAGCCCC 477931 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 477992 29 96.6 32 ............T................ CCGAAATACGATGCCGGAATATCGTAAACGGA 478053 29 100.0 32 ............................. GGAGGACGCTACTATCGGATTCGCTCCGGGGA 478114 29 100.0 32 ............................. GATTTACTAAGGTCAACAAGGGATTGAATTGG 478175 29 100.0 32 ............................. CTCATGCGCAGCACTGGATCGAGAGCGAAGGG 478236 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 478297 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 478358 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 478419 29 96.6 32 ......G...................... GGGATCGCGTTGGCGGTCGCATCCGTTGCCGT 478480 29 93.1 32 .....A......T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 478541 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 495124-499120 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDD01000001.1 Salmonella enterica subsp. enterica serovar Muenster strain TRWAIA .SLX_12186.D707_D506.HJ72NBBXX.s_1.r.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 495124 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 495185 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 495246 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 495307 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 495368 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 495429 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 495490 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 495551 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 495612 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 495673 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 495734 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 495795 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 495857 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 495918 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 495979 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 496040 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 496101 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 496162 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 496223 29 96.6 32 ............................T CGCCCACCCTGAGTATTATCACTACTCCGGAC 496284 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 496346 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 496407 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 496468 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 496529 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 496590 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 496651 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 496712 29 100.0 32 ............................. TATTTCACTGACTGACTACGGCGGATCGAGTA 496773 29 100.0 32 ............................. TCAGGAAACAGCGCAATATTGATTTACTCGCA 496834 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCGGAGATGGTG 496895 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 496956 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 497017 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 497078 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 497139 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 497201 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 497262 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 497323 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 497384 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 497445 29 100.0 32 ............................. CTGTTTTGTCTCACGCTGGCGACCTCCCTGGT 497506 29 100.0 32 ............................. GCGGGACCGGAGGCGCAAGTGGTGGCGCTTTA 497567 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 497628 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 497689 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 497750 29 100.0 32 ............................. GCGTTTGAATCCTCCTGGTGGCGTATGCAGGG 497811 29 96.6 32 ..........T.................. GCCCGAGACACCCGCGCGTTATTTTTGAACCT 497872 29 100.0 32 ............................. TTTGAACAGGCGCTGAACTGGGCTGATATCGC 497933 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 497994 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 498055 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 498116 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 498177 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 498238 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 498299 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 498361 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 498422 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 498483 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 498544 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 498605 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 498666 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 498727 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 498788 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 498849 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 498910 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 498971 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 499032 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 499093 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 66 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //